Wall clock time and date at job start Mon Mar 30 2020 07:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53885 * 2 1 4 4 C 1.33387 * 114.91542 * 180.27438 * 3 2 1 5 5 S 1.75885 * 109.59583 * 359.77549 * 4 3 2 6 6 C 1.33384 * 122.53698 * 179.83716 * 2 1 3 7 7 C 1.50703 * 125.20461 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.47107 * 89.71991 * 7 6 2 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47071 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47071 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00036 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00179 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00465 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99918 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46932 * 90.00244 * 17 15 13 19 19 H 1.48500 * 109.47257 * 210.00251 * 17 15 13 20 20 H 1.48501 * 109.47058 * 330.00866 * 17 15 13 21 21 H 1.09000 * 109.46974 * 270.16982 * 1 2 3 22 22 H 1.08999 * 109.46782 * 30.16202 * 1 2 3 23 23 H 1.08997 * 109.47095 * 150.16544 * 1 2 3 24 24 H 1.07991 * 122.54231 * 0.04681 * 3 2 1 25 25 H 1.08002 * 125.20018 * 179.75340 * 4 3 2 26 26 H 1.09002 * 109.47152 * 329.72078 * 7 6 2 27 27 H 1.09001 * 109.46980 * 209.72179 * 7 6 2 28 28 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 29 29 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 30 30 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 31 31 H 1.09005 * 109.47424 * 300.00229 * 10 9 8 32 32 H 1.09004 * 109.47266 * 59.99979 * 10 9 8 33 33 H 1.08995 * 109.47051 * 300.00167 * 11 10 9 34 34 H 1.09003 * 109.46901 * 60.00330 * 11 10 9 35 35 H 1.09005 * 109.47424 * 300.00160 * 12 11 10 36 36 H 1.08993 * 109.46983 * 60.00371 * 12 11 10 37 37 H 0.96998 * 120.00145 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9386 -0.7305 -0.0052 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0066 8 7 1.4624 -2.9734 -1.3772 9 6 0.9065 -4.3328 -1.4131 10 6 0.7226 -4.7703 -2.8676 11 6 0.1430 -6.1858 -2.9050 12 6 -0.0415 -6.6230 -4.3595 13 6 -0.6129 -8.0170 -4.3963 14 1 -0.8230 -8.5391 -3.4745 15 6 -0.8665 -8.6264 -5.6068 16 7 -1.3647 -9.8431 -5.6390 17 14 -0.5026 -7.7238 -7.2013 18 1 0.8896 -8.0151 -7.6283 19 1 -1.4479 -8.1764 -8.2533 20 1 -0.6598 -6.2624 -6.9898 21 1 -0.3633 0.0030 1.0277 22 1 -0.3633 0.8885 -0.5164 23 1 -0.3633 -0.8914 -0.5112 24 1 1.7966 2.1464 0.0007 25 1 4.3078 1.7822 -0.0105 26 1 0.6944 -2.5180 0.5244 27 1 2.3418 -3.1922 0.5181 28 1 0.8794 -2.3303 -1.8917 29 1 1.5898 -5.0181 -0.9116 30 1 -0.0578 -4.3444 -0.9050 31 1 0.0395 -4.0850 -3.3696 32 1 1.6871 -4.7586 -3.3754 33 1 0.8258 -6.8712 -2.4030 34 1 -0.8215 -6.1970 -2.3975 35 1 -0.7245 -5.9374 -4.8612 36 1 0.9228 -6.6117 -4.8674 37 1 -1.5435 -10.2716 -6.4906 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385210841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:33 Heat of formation + Delta-G solvation = 6.215147 kcal Electronic energy + Delta-G solvation = -15529.336064 eV Core-core repulsion = 13011.192384 eV Total energy + Delta-G solvation = -2518.143681 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -38.85445 -36.66610 -34.33646 -32.37574 -31.15429 -29.54139 -27.77398 -25.03829 -23.58798 -22.49939 -21.29773 -20.00866 -18.51084 -17.55939 -16.61035 -15.83665 -15.47609 -14.97814 -14.51332 -14.20837 -13.88975 -13.80752 -13.20148 -12.73461 -12.65301 -12.45104 -12.25602 -12.06136 -11.81688 -11.65675 -11.59086 -11.14302 -10.85671 -10.76374 -10.54079 -9.86055 -9.66080 -9.50224 -9.13306 -8.87107 -8.53604 -8.50212 -8.42414 -6.01005 -3.98588 0.78442 1.47973 1.86039 2.45643 3.33897 3.40821 3.45447 4.19291 4.48788 4.63287 4.69231 4.93040 5.15043 5.18439 5.28729 5.32615 5.35257 5.36757 5.44655 5.50184 5.68318 5.80848 5.85315 6.03500 6.11077 6.18650 6.31507 6.38546 6.67826 6.77886 6.87561 7.05036 7.30212 7.37021 7.49897 7.84251 8.58223 9.04248 9.62085 11.12630 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.040671 B = 0.003073 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.278800 B = 9109.732339 C = 9156.974872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.109 4.109 3 C -0.131 4.131 4 C -0.220 4.220 5 S 0.117 5.883 6 C -0.171 4.171 7 C 0.128 3.872 8 N -0.686 5.686 9 C 0.059 3.941 10 C -0.118 4.118 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.520 4.520 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.137 0.863 25 H 0.162 0.838 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.342 0.658 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.014 0.986 36 H 0.011 0.989 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.617 23.021 13.321 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.162 4.162 4 C -0.356 4.356 5 S 0.382 5.618 6 C -0.289 4.289 7 C -0.003 4.003 8 N -0.317 5.317 9 C -0.070 4.070 10 C -0.156 4.156 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.558 4.558 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.155 0.845 25 H 0.179 0.821 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.160 0.840 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.589 21.804 13.130 27.198 hybrid contribution -1.949 1.425 -0.668 2.505 sum 7.640 23.229 12.462 27.445 Atomic orbital electron populations 1.20512 0.89924 1.02708 1.02196 1.18869 0.97337 0.91722 1.04264 1.20002 0.92894 0.99117 1.04149 1.25607 0.99771 0.99503 1.10737 1.84342 1.05714 0.99641 1.72054 1.24240 0.96021 0.98554 1.10042 1.20333 0.99156 0.89622 0.91173 1.60559 1.55031 1.04232 1.11921 1.22089 0.97371 0.88831 0.98667 1.21671 1.01476 0.98204 0.94253 1.21415 0.99559 0.93172 0.99760 1.19569 0.96203 0.96984 0.92391 1.21194 1.41783 0.98517 0.94292 0.91133 1.25051 0.94668 0.94721 0.99208 1.69921 1.45090 1.13497 1.26023 0.86757 0.78274 0.80780 0.83348 1.20295 1.21461 1.19009 0.91311 0.91371 0.91789 0.84546 0.82071 0.93289 0.90040 0.84029 0.90964 0.95218 0.92721 0.91584 0.92807 0.93025 0.96774 0.97069 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.60 36.01 0.35 -0.40 16 2 C -0.11 -1.05 5.80 -106.25 -0.62 -1.67 16 3 C -0.13 -1.16 9.98 -41.21 -0.41 -1.57 16 4 C -0.22 -1.92 11.23 29.04 0.33 -1.59 16 5 S 0.12 1.17 23.33 -107.50 -2.51 -1.34 16 6 C -0.17 -1.79 6.02 -36.00 -0.22 -2.01 16 7 C 0.13 1.35 5.54 -4.98 -0.03 1.32 16 8 N -0.69 -8.34 6.49 -115.05 -0.75 -9.09 16 9 C 0.06 0.79 5.69 -3.82 -0.02 0.76 16 10 C -0.12 -1.90 5.47 -26.73 -0.15 -2.04 16 11 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 13 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 14 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 17 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 23 H 0.06 0.52 7.07 -51.93 -0.37 0.15 16 24 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 25 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 26 H 0.05 0.48 7.33 -51.93 -0.38 0.10 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.34 3.98 8.53 -39.29 -0.34 3.65 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -31.27 319.03 -9.88 -41.15 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.09 Total: -1.90 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -1.45 Total: -23.47 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.03 Total: -36.77 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.27 -9.88 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385210841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.366 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds