Wall clock time and date at job start Mon Mar 30 2020 07:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38429 * 122.53885 * 2 1 4 4 C 1.33387 * 114.91542 * 180.27438 * 3 2 1 5 5 S 1.75885 * 109.59583 * 359.77549 * 4 3 2 6 6 C 1.33384 * 122.53698 * 179.83716 * 2 1 3 7 7 C 1.50703 * 125.20461 * 0.02562 * 6 2 1 8 8 N 1.46899 * 109.47107 * 89.71991 * 7 6 2 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47071 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47071 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46912 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00036 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00179 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00465 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99918 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46932 * 90.00244 * 17 15 13 19 19 H 1.48500 * 109.47257 * 210.00251 * 17 15 13 20 20 H 1.48501 * 109.47058 * 330.00866 * 17 15 13 21 21 H 1.09000 * 109.46974 * 270.16982 * 1 2 3 22 22 H 1.08999 * 109.46782 * 30.16202 * 1 2 3 23 23 H 1.08997 * 109.47095 * 150.16544 * 1 2 3 24 24 H 1.07991 * 122.54231 * 0.04681 * 3 2 1 25 25 H 1.08002 * 125.20018 * 179.75340 * 4 3 2 26 26 H 1.09002 * 109.47152 * 329.72078 * 7 6 2 27 27 H 1.09001 * 109.46980 * 209.72179 * 7 6 2 28 28 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 29 29 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 30 30 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 31 31 H 1.09005 * 109.47424 * 300.00229 * 10 9 8 32 32 H 1.09004 * 109.47266 * 59.99979 * 10 9 8 33 33 H 1.08995 * 109.47051 * 300.00167 * 11 10 9 34 34 H 1.09003 * 109.46901 * 60.00330 * 11 10 9 35 35 H 1.09005 * 109.47424 * 300.00160 * 12 11 10 36 36 H 1.08993 * 109.46983 * 60.00371 * 12 11 10 37 37 H 0.96998 * 120.00145 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9386 -0.7305 -0.0052 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5192 0.0066 8 7 1.4624 -2.9734 -1.3772 9 6 0.9065 -4.3328 -1.4131 10 6 0.7226 -4.7703 -2.8676 11 6 0.1430 -6.1858 -2.9050 12 6 -0.0415 -6.6230 -4.3595 13 6 -0.6129 -8.0170 -4.3963 14 1 -0.8230 -8.5391 -3.4745 15 6 -0.8665 -8.6264 -5.6068 16 7 -1.3647 -9.8431 -5.6390 17 14 -0.5026 -7.7238 -7.2013 18 1 0.8896 -8.0151 -7.6283 19 1 -1.4479 -8.1764 -8.2533 20 1 -0.6598 -6.2624 -6.9898 21 1 -0.3633 0.0030 1.0277 22 1 -0.3633 0.8885 -0.5164 23 1 -0.3633 -0.8914 -0.5112 24 1 1.7966 2.1464 0.0007 25 1 4.3078 1.7822 -0.0105 26 1 0.6944 -2.5180 0.5244 27 1 2.3418 -3.1922 0.5181 28 1 0.8794 -2.3303 -1.8917 29 1 1.5898 -5.0181 -0.9116 30 1 -0.0578 -4.3444 -0.9050 31 1 0.0395 -4.0850 -3.3696 32 1 1.6871 -4.7586 -3.3754 33 1 0.8258 -6.8712 -2.4030 34 1 -0.8215 -6.1970 -2.3975 35 1 -0.7245 -5.9374 -4.8612 36 1 0.9228 -6.6117 -4.8674 37 1 -1.5435 -10.2716 -6.4906 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385210841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:31 Heat of formation + Delta-G solvation = -12.672512 kcal Electronic energy + Delta-G solvation = -15530.155095 eV Core-core repulsion = 13011.192384 eV Total energy + Delta-G solvation = -2518.962711 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.57361 -37.76662 -35.92980 -34.24350 -32.18264 -30.70648 -28.97133 -26.33914 -24.74216 -23.23852 -22.70364 -21.72497 -19.20948 -18.87811 -18.28446 -16.87462 -16.37049 -16.13285 -15.89715 -15.76040 -14.85542 -14.67248 -14.52882 -14.26857 -13.77510 -13.58595 -13.24820 -13.17141 -12.96768 -12.80147 -12.68594 -12.45535 -12.25945 -12.04131 -11.75181 -11.57322 -11.38325 -11.31181 -11.21384 -10.76171 -9.63576 -9.37502 -9.20111 -8.29557 -6.33637 0.07880 0.77604 1.16664 1.36373 1.37863 1.50532 1.77896 2.36735 3.05868 3.24578 3.86128 4.07943 4.08265 4.16444 4.28329 4.46473 4.52904 4.58004 4.61936 4.64855 4.75776 4.78872 4.80841 4.91428 5.11125 5.14331 5.18272 5.19833 5.26430 5.52052 5.58181 5.65072 5.65895 5.69007 5.98723 6.29528 6.39303 6.74811 7.31299 8.87465 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.040671 B = 0.003073 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.278800 B = 9109.732339 C = 9156.974872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.109 4.109 3 C -0.141 4.141 4 C -0.214 4.214 5 S 0.088 5.912 6 C -0.191 4.191 7 C 0.132 3.868 8 N -0.691 5.691 9 C 0.068 3.932 10 C -0.106 4.106 11 C -0.095 4.095 12 C -0.013 4.013 13 C -0.535 4.535 14 H 0.030 0.970 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.954 3.046 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.246 1.246 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.158 0.842 25 H 0.184 0.816 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.345 0.655 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.019 0.981 36 H 0.016 0.984 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 25.776 12.900 29.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.171 4.171 4 C -0.350 4.350 5 S 0.353 5.647 6 C -0.308 4.308 7 C 0.002 3.998 8 N -0.323 5.323 9 C -0.061 4.061 10 C -0.144 4.144 11 C -0.133 4.133 12 C -0.050 4.050 13 C -0.573 4.573 14 H 0.049 0.951 15 C -0.196 4.196 16 N -0.595 5.595 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.169 1.169 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.078 0.922 24 H 0.176 0.824 25 H 0.201 0.799 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.164 0.836 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.994 24.576 12.730 29.426 hybrid contribution -2.095 0.549 -0.449 2.211 sum 7.900 25.125 12.281 29.060 Atomic orbital electron populations 1.20561 0.88768 1.03125 1.02884 1.19188 0.98318 0.91741 1.03000 1.20294 0.92986 0.99855 1.03998 1.25919 1.00382 0.98958 1.09711 1.84412 1.06187 1.01376 1.72728 1.24253 0.96102 0.98672 1.11803 1.20285 0.99535 0.89818 0.90200 1.60496 1.54964 1.03654 1.13139 1.21886 0.97835 0.89636 0.96704 1.21486 1.01018 0.95655 0.96258 1.21286 0.99675 0.95565 0.96756 1.19545 0.95897 0.94110 0.95465 1.21580 1.41943 1.00773 0.93007 0.95146 1.26078 0.94371 0.95570 1.03557 1.70076 1.46571 1.15486 1.27323 0.85605 0.78495 0.80241 0.77981 1.19197 1.20869 1.16938 0.90439 0.90153 0.92169 0.82415 0.79859 0.92379 0.90405 0.83624 0.91173 0.94520 0.91945 0.91931 0.93459 0.93315 0.96253 0.96562 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 9.60 71.24 0.68 -0.58 16 2 C -0.11 -1.89 5.80 -20.92 -0.12 -2.01 16 3 C -0.14 -2.16 9.98 21.22 0.21 -1.95 16 4 C -0.21 -3.28 11.23 66.72 0.75 -2.53 16 5 S 0.09 1.66 23.33 -56.49 -1.32 0.35 16 6 C -0.19 -3.75 6.02 24.59 0.15 -3.61 16 7 C 0.13 2.62 5.54 85.56 0.47 3.09 16 8 N -0.69 -15.66 6.49 -517.92 -3.36 -19.02 16 9 C 0.07 1.71 5.69 86.30 0.49 2.20 16 10 C -0.11 -3.22 5.47 30.59 0.17 -3.05 16 11 C -0.09 -3.69 5.15 30.59 0.16 -3.53 16 12 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 13 C -0.54 -31.77 9.66 25.60 0.25 -31.52 16 14 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 15 C 0.00 0.03 5.47 84.65 0.46 0.50 16 16 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 17 Si 0.95 45.22 27.47 68.60 1.88 47.11 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.25 -10.81 6.54 99.48 0.65 -10.15 16 21 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.08 0.88 8.13 -2.39 -0.02 0.86 16 23 H 0.06 0.86 7.07 -2.39 -0.02 0.84 16 24 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 25 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 26 H 0.06 1.04 7.33 -2.39 -0.02 1.02 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.35 7.38 8.53 -89.69 -0.77 6.61 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.02 0.90 7.20 -2.38 -0.02 0.88 16 36 H 0.02 0.75 7.57 -2.39 -0.02 0.74 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -67.38 319.03 1.51 -65.86 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.21 Total: 10.02 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 3.79 Total: -43.49 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -3.06 Total: -79.85 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.32 Total: 0.35 kcal Total: -67.38 1.51 -65.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385210841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.192 kcal (2) G-P(sol) polarization free energy of solvation -67.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds