Wall clock time and date at job start Mon Mar 30 2020 07:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33388 * 125.19964 * 2 1 4 4 C 1.38429 * 114.92201 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.53975 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00095 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46897 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47515 * 180.02562 * 10 9 8 12 12 H 1.08011 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00400 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99947 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00192 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47488 * 59.99672 * 15 13 11 17 17 H 1.48503 * 109.47443 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47341 * 300.00046 * 15 13 11 19 19 C 1.33388 * 114.91925 * 0.24683 * 4 3 2 20 20 S 1.75884 * 125.20671 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47107 * 90.00204 * 1 2 3 22 22 H 1.09005 * 109.46713 * 209.99619 * 1 2 3 23 23 H 1.08996 * 109.47170 * 329.99224 * 1 2 3 24 24 H 1.07998 * 122.54253 * 0.02562 * 3 2 1 25 25 H 1.09001 * 109.47558 * 330.00258 * 5 4 3 26 26 H 1.08998 * 109.47216 * 209.99921 * 5 4 3 27 27 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 28 28 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 29 29 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 30 30 H 1.08995 * 109.46615 * 299.99641 * 8 7 6 31 31 H 1.08996 * 109.46939 * 60.00272 * 8 7 6 32 32 H 1.08993 * 109.47740 * 299.99810 * 9 8 7 33 33 H 1.09005 * 109.47573 * 59.99976 * 9 8 7 34 34 H 1.08997 * 109.47664 * 300.00230 * 10 9 8 35 35 H 1.09005 * 109.47058 * 60.00267 * 10 9 8 36 36 H 0.96997 * 119.99623 * 180.02562 * 14 13 11 37 37 H 1.07999 * 125.20151 * 179.75071 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8430 -0.0006 5 6 4.6622 1.9484 -0.0012 6 7 4.9956 2.3078 1.3836 7 6 5.9933 3.3854 1.4221 8 6 6.3148 3.7309 2.8776 9 6 7.3543 4.8528 2.9176 10 6 7.6753 5.1988 4.3730 11 6 8.6988 6.3042 4.4127 12 1 9.0817 6.7190 3.4918 13 6 9.1464 6.7863 5.6243 14 7 8.6805 6.2810 6.7456 15 14 10.4144 8.1570 5.6734 16 1 9.8724 9.3576 4.9878 17 1 10.7262 8.4928 7.0860 18 1 11.6526 7.7109 4.9853 19 6 3.9751 -0.4476 -0.0062 20 16 2.5210 -1.4371 -0.0006 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.8668 2.0895 0.0004 25 1 4.2561 2.8198 -0.5150 26 1 5.5617 1.6099 -0.5154 27 1 5.3138 1.5014 1.8999 28 1 6.9022 3.0573 0.9177 29 1 5.5960 4.2665 0.9184 30 1 5.4061 4.0589 3.3823 31 1 6.7123 2.8496 3.3809 32 1 8.2629 4.5246 2.4130 33 1 6.9573 5.7343 2.4141 34 1 6.7667 5.5273 4.8774 35 1 8.0723 4.3175 4.8769 36 1 8.9952 6.6204 7.5981 37 1 4.9863 -0.8268 -0.0114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385233182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:38 Heat of formation + Delta-G solvation = -15.684517 kcal Electronic energy + Delta-G solvation = -15269.008938 eV Core-core repulsion = 12749.915616 eV Total energy + Delta-G solvation = -2519.093321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58367 -37.57265 -35.81272 -34.15975 -32.79016 -30.23479 -27.67551 -27.27799 -25.42740 -22.88114 -22.37101 -21.65780 -19.82530 -18.45277 -18.12884 -16.80937 -16.54501 -16.21320 -15.78280 -15.53938 -14.67903 -14.65218 -14.27538 -14.09604 -13.86817 -13.71500 -13.33471 -13.13795 -12.93719 -12.77549 -12.67580 -12.42378 -12.22984 -12.16953 -12.08006 -11.60795 -11.36729 -11.30633 -10.99818 -10.54741 -9.53968 -9.41361 -9.21874 -8.19534 -6.31292 0.07083 0.73273 1.06017 1.39616 1.43229 1.51193 1.72799 2.41254 3.13024 3.36719 3.83441 4.06591 4.15451 4.20054 4.36650 4.43252 4.53764 4.56904 4.64956 4.69353 4.74826 4.79943 4.85033 4.93708 5.11194 5.23040 5.25335 5.28012 5.36216 5.49274 5.55350 5.60269 5.78462 5.87230 6.06180 6.25960 6.42038 6.86348 7.38057 8.92276 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.055795 B = 0.002605 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.716034 B =10747.608381 C =10814.823519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.186 4.186 3 C -0.140 4.140 4 C -0.101 4.101 5 C 0.120 3.880 6 N -0.693 5.693 7 C 0.072 3.928 8 C -0.106 4.106 9 C -0.096 4.096 10 C 0.022 3.978 11 C -0.546 4.546 12 H 0.061 0.939 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.266 1.266 19 C -0.220 4.220 20 S 0.095 5.905 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.142 0.858 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.342 0.658 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.051 0.949 34 H -0.012 1.012 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 -14.848 -17.108 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.303 4.303 3 C -0.170 4.170 4 C -0.113 4.113 5 C -0.011 4.011 6 N -0.324 5.324 7 C -0.057 4.057 8 C -0.144 4.144 9 C -0.134 4.134 10 C -0.015 4.015 11 C -0.584 4.584 12 H 0.079 0.921 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.357 4.357 20 S 0.360 5.640 21 H 0.104 0.896 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.160 0.840 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.160 0.840 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.939 -15.982 -16.869 27.626 hybrid contribution 1.821 1.660 0.345 2.489 sum -13.118 -14.322 -16.524 25.500 Atomic orbital electron populations 1.20429 0.86170 1.03896 1.03643 1.24825 1.01236 0.95378 1.08834 1.20108 0.92472 0.99913 1.04520 1.18894 0.94932 0.94132 1.03383 1.20578 0.95324 0.95609 0.89604 1.60469 1.45824 1.12699 1.13435 1.21868 0.92985 0.94756 0.96126 1.21463 0.98436 0.98080 0.96410 1.21393 0.97644 0.97336 0.97073 1.19025 0.94688 0.94730 0.93034 1.21729 1.24169 1.19801 0.92667 0.92107 1.26040 0.99034 0.99743 0.95307 1.70104 1.45277 1.44167 0.98024 0.85477 0.79121 0.79112 0.77191 1.19082 1.20810 1.19056 1.25652 1.02725 0.96209 1.11072 1.84114 0.96727 1.09652 1.73556 0.89571 0.90595 0.89870 0.83993 0.89887 0.93596 0.83972 0.94595 0.90789 0.92785 0.92975 0.93001 0.92974 0.99340 0.99283 0.92766 0.80928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.38 71.24 0.74 -0.26 16 2 C -0.19 -3.28 6.51 24.59 0.16 -3.12 16 3 C -0.14 -2.80 9.85 21.22 0.21 -2.59 16 4 C -0.10 -2.05 5.31 -20.92 -0.11 -2.16 16 5 C 0.12 2.45 5.94 85.55 0.51 2.96 16 6 N -0.69 -17.05 6.49 -517.92 -3.36 -20.41 16 7 C 0.07 1.94 5.69 86.30 0.49 2.43 16 8 C -0.11 -3.65 5.47 30.59 0.17 -3.49 16 9 C -0.10 -4.02 5.15 30.59 0.16 -3.86 16 10 C 0.02 1.22 4.97 29.85 0.15 1.37 16 11 C -0.55 -31.92 9.11 25.60 0.23 -31.69 16 12 H 0.06 3.38 7.74 -2.90 -0.02 3.36 16 13 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 14 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 15 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 C -0.22 -4.08 10.98 66.72 0.73 -3.35 16 20 S 0.10 1.63 23.33 -56.49 -1.32 0.31 16 21 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 23 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 25 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 26 H 0.05 0.86 8.12 -2.39 -0.02 0.84 16 27 H 0.34 8.19 8.72 -89.69 -0.78 7.41 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 36 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -65.92 325.48 1.78 -64.14 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.25 Total: 10.62 kcal Atomic # 6 Polarization: -47.42 SS G_CDS: 3.90 Total: -43.53 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -3.08 Total: -78.53 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.32 Total: 0.31 kcal Total: -65.92 1.78 -64.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385233182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.459 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds