Wall clock time and date at job start Mon Mar 30 2020 06:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99893 * 2 1 4 4 H 1.48496 * 109.47026 * 269.99983 * 3 2 1 5 5 H 1.48502 * 109.46964 * 30.00433 * 3 2 1 6 6 H 1.48503 * 109.46777 * 149.99989 * 3 2 1 7 7 C 1.37876 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99994 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00197 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47526 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47467 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47138 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.46993 * 179.97438 * 12 11 10 14 14 C 1.36068 * 117.00001 * 179.97438 * 13 12 11 15 15 C 1.39262 * 120.08494 * 90.00364 * 14 13 12 16 16 N 1.39966 * 120.07614 * 359.97438 * 15 14 13 17 17 C 1.38747 * 119.84762 * 179.70320 * 15 14 13 18 18 C 1.38244 * 120.01848 * 0.29523 * 17 15 14 19 19 C 1.38229 * 120.17208 * 359.95815 * 18 17 15 20 20 C 1.38496 * 120.15091 * 0.04484 * 19 18 17 21 21 F 1.35104 * 120.00314 * 179.97438 * 20 19 18 22 22 H 0.97005 * 119.99865 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47334 * 59.99261 * 9 7 2 24 24 H 1.09004 * 109.46794 * 299.99735 * 9 7 2 25 25 H 1.08998 * 109.47391 * 59.99328 * 10 9 7 26 26 H 1.09004 * 109.46893 * 299.99706 * 10 9 7 27 27 H 1.09000 * 109.47420 * 59.99899 * 11 10 9 28 28 H 1.08997 * 109.47285 * 299.99599 * 11 10 9 29 29 H 1.08998 * 109.47393 * 59.99681 * 12 11 10 30 30 H 1.09004 * 109.47222 * 299.99857 * 12 11 10 31 31 H 0.97001 * 120.00335 * 179.73188 * 16 15 14 32 32 H 0.97005 * 119.99941 * 359.45116 * 16 15 14 33 33 H 1.08000 * 119.98981 * 180.27400 * 17 15 14 34 34 H 1.07998 * 119.91371 * 179.97438 * 18 17 15 35 35 H 1.07997 * 119.91877 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5515 -2.6365 -0.0001 12 6 6.0615 -4.0790 0.0004 13 8 7.4905 -4.0790 -0.0003 14 6 8.1083 -5.2914 0.0006 15 6 8.4247 -5.9145 -1.2039 16 7 8.1076 -5.2954 -2.4185 17 6 9.0602 -7.1479 -1.1973 18 6 9.3724 -7.7586 0.0030 19 6 9.0540 -7.1432 1.1991 20 6 8.4196 -5.9121 1.2007 21 9 8.1092 -5.3135 2.3715 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.6808 0.8904 24 1 3.8751 -0.6797 -0.8895 25 1 3.6585 -3.1502 -0.8902 26 1 3.6579 -3.1505 0.8897 27 1 5.9149 -2.1227 0.8899 28 1 5.9148 -2.1227 -0.8901 29 1 5.6981 -4.5932 -0.8893 30 1 5.6982 -4.5925 0.8906 31 1 8.3320 -5.7286 -3.2569 32 1 7.6597 -4.4349 -2.4218 33 1 9.3106 -7.6312 -2.1301 34 1 9.8667 -8.7188 0.0062 35 1 9.3001 -7.6237 2.1344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385785975.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:47 Heat of formation + Delta-G solvation = -79.155389 kcal Electronic energy + Delta-G solvation = -17820.779892 eV Core-core repulsion = 14732.721091 eV Total energy + Delta-G solvation = -3088.058801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.91555 -40.02229 -37.58805 -34.86381 -34.54136 -32.40306 -30.26336 -29.25305 -28.42511 -25.05880 -22.79749 -22.50826 -21.59442 -20.12152 -18.19344 -17.82548 -17.43635 -16.64753 -15.88451 -15.69424 -15.33829 -15.23348 -15.02570 -14.58096 -14.08600 -13.73865 -13.10227 -12.93400 -12.61967 -12.34347 -12.21028 -11.89702 -11.49659 -11.38114 -10.83570 -10.80170 -10.72827 -9.94374 -9.83513 -9.71413 -9.62684 -9.17754 -8.77424 -8.52822 -7.83678 -6.03467 -4.01522 0.88741 1.17488 3.20376 3.31925 3.39411 3.44161 3.47549 3.72827 4.23654 4.46554 4.61938 4.83256 5.05987 5.15810 5.22024 5.30987 5.35191 5.57955 5.62666 5.75529 5.86924 5.97663 5.99518 6.14383 6.28570 6.49073 6.58386 6.68720 6.88404 7.01671 7.30556 7.43918 7.47173 7.54407 7.80468 8.54806 9.01286 9.59192 11.10029 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.038799 B = 0.003674 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.493644 B = 7618.807385 C = 7869.804564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C -0.118 4.118 12 C 0.061 3.939 13 O -0.323 6.323 14 C -0.015 4.015 15 C 0.229 3.771 16 N -0.865 5.865 17 C -0.203 4.203 18 C -0.049 4.049 19 C -0.206 4.206 20 C 0.129 3.871 21 F -0.130 7.130 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.012 0.988 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.401 0.599 32 H 0.407 0.593 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.487 -15.269 -2.824 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.155 4.155 12 C -0.013 4.013 13 O -0.240 6.240 14 C -0.064 4.064 15 C 0.122 3.878 16 N -0.403 5.403 17 C -0.226 4.226 18 C -0.068 4.068 19 C -0.227 4.227 20 C 0.108 3.892 21 F -0.108 7.108 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.230 0.770 32 H 0.236 0.764 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 20.389 -14.938 -2.759 25.426 hybrid contribution 0.012 0.982 -0.124 0.990 sum 20.401 -13.956 -2.884 24.885 Atomic orbital electron populations 1.69921 1.06318 1.26877 1.51268 1.25044 0.94746 0.99229 0.94565 0.86762 0.80418 0.83539 0.78493 1.20314 1.21385 1.18931 1.21159 0.89559 0.94462 1.50736 0.91083 1.19561 0.97050 0.92064 0.96375 1.21399 0.90689 1.00318 1.01286 1.21689 0.97645 0.93255 1.02942 1.23046 0.78058 0.99698 1.00536 1.86196 1.20586 1.23215 1.94015 1.18087 1.07420 0.90728 0.90214 1.17890 0.92822 0.91174 0.85961 1.42488 1.67966 1.25436 1.04416 1.20564 1.07308 0.95610 0.99153 1.20723 0.96344 0.98911 0.90841 1.20852 1.06565 0.95337 0.99959 1.17878 0.98871 0.91817 0.80608 1.91513 1.90738 1.83259 1.45315 0.92756 0.96493 0.96995 0.92702 0.92563 0.91353 0.91576 0.93149 0.92923 0.77008 0.76377 0.85254 0.84898 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 10 C -0.10 -1.97 5.15 -26.74 -0.14 -2.11 16 11 C -0.12 -1.96 5.58 -26.73 -0.15 -2.11 16 12 C 0.06 0.91 6.06 37.16 0.23 1.13 16 13 O -0.32 -4.87 9.17 -19.96 -0.18 -5.06 16 14 C -0.01 -0.20 5.75 -39.05 -0.22 -0.42 16 15 C 0.23 2.47 6.77 -83.57 -0.57 1.90 16 16 N -0.86 -7.55 9.09 32.51 0.30 -7.26 16 17 C -0.20 -1.75 9.89 -39.39 -0.39 -2.14 16 18 C -0.05 -0.40 10.04 -39.58 -0.40 -0.80 16 19 C -0.21 -2.07 10.02 -39.49 -0.40 -2.46 16 20 C 0.13 1.68 7.30 -39.33 -0.29 1.39 16 21 F -0.13 -1.92 17.11 2.25 0.04 -1.88 16 22 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 23 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.40 2.36 8.85 -40.82 -0.36 2.00 16 32 H 0.41 3.83 8.19 -40.82 -0.33 3.50 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 304.42 15.07 4.59 4.59 Total: -1.00 -32.47 304.42 -6.88 -39.35 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.85 Total: 0.02 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -2.86 Total: -19.65 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 1.07 Total: -34.76 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.18 Total: -5.06 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.47 -6.88 -39.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385785975.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.807 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds