Wall clock time and date at job start Mon Mar 30 2020 06:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99893 * 2 1 4 4 H 1.48496 * 109.47026 * 269.99983 * 3 2 1 5 5 H 1.48502 * 109.46964 * 30.00433 * 3 2 1 6 6 H 1.48503 * 109.46777 * 149.99989 * 3 2 1 7 7 C 1.37876 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99994 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00197 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47526 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47467 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47138 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.46993 * 179.97438 * 12 11 10 14 14 C 1.36068 * 117.00001 * 179.97438 * 13 12 11 15 15 C 1.39262 * 120.08494 * 90.00364 * 14 13 12 16 16 N 1.39966 * 120.07614 * 359.97438 * 15 14 13 17 17 C 1.38747 * 119.84762 * 179.70320 * 15 14 13 18 18 C 1.38244 * 120.01848 * 0.29523 * 17 15 14 19 19 C 1.38229 * 120.17208 * 359.95815 * 18 17 15 20 20 C 1.38496 * 120.15091 * 0.04484 * 19 18 17 21 21 F 1.35104 * 120.00314 * 179.97438 * 20 19 18 22 22 H 0.97005 * 119.99865 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47334 * 59.99261 * 9 7 2 24 24 H 1.09004 * 109.46794 * 299.99735 * 9 7 2 25 25 H 1.08998 * 109.47391 * 59.99328 * 10 9 7 26 26 H 1.09004 * 109.46893 * 299.99706 * 10 9 7 27 27 H 1.09000 * 109.47420 * 59.99899 * 11 10 9 28 28 H 1.08997 * 109.47285 * 299.99599 * 11 10 9 29 29 H 1.08998 * 109.47393 * 59.99681 * 12 11 10 30 30 H 1.09004 * 109.47222 * 299.99857 * 12 11 10 31 31 H 0.97001 * 120.00335 * 179.73188 * 16 15 14 32 32 H 0.97005 * 119.99941 * 359.45116 * 16 15 14 33 33 H 1.08000 * 119.98981 * 180.27400 * 17 15 14 34 34 H 1.07998 * 119.91371 * 179.97438 * 18 17 15 35 35 H 1.07997 * 119.91877 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5515 -2.6365 -0.0001 12 6 6.0615 -4.0790 0.0004 13 8 7.4905 -4.0790 -0.0003 14 6 8.1083 -5.2914 0.0006 15 6 8.4247 -5.9145 -1.2039 16 7 8.1076 -5.2954 -2.4185 17 6 9.0602 -7.1479 -1.1973 18 6 9.3724 -7.7586 0.0030 19 6 9.0540 -7.1432 1.1991 20 6 8.4196 -5.9121 1.2007 21 9 8.1092 -5.3135 2.3715 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.6808 0.8904 24 1 3.8751 -0.6797 -0.8895 25 1 3.6585 -3.1502 -0.8902 26 1 3.6579 -3.1505 0.8897 27 1 5.9149 -2.1227 0.8899 28 1 5.9148 -2.1227 -0.8901 29 1 5.6981 -4.5932 -0.8893 30 1 5.6982 -4.5925 0.8906 31 1 8.3320 -5.7286 -3.2569 32 1 7.6597 -4.4349 -2.4218 33 1 9.3106 -7.6312 -2.1301 34 1 9.8667 -8.7188 0.0062 35 1 9.3001 -7.6237 2.1344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385785975.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:46 Heat of formation + Delta-G solvation = -100.227347 kcal Electronic energy + Delta-G solvation = -17821.693641 eV Core-core repulsion = 14732.721091 eV Total energy + Delta-G solvation = -3088.972550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.91245 -40.89122 -38.56114 -36.51047 -35.29294 -34.44122 -31.57424 -30.38543 -29.36844 -26.75526 -23.73372 -23.41639 -23.00545 -21.83688 -19.12436 -18.86935 -18.65960 -18.29458 -16.91767 -16.76970 -16.37472 -16.23386 -16.09642 -15.90447 -15.40063 -15.09078 -14.78582 -14.10827 -13.89809 -13.70112 -13.36358 -13.28075 -12.86020 -12.63630 -12.39187 -12.25107 -11.78828 -11.54897 -11.52447 -11.46314 -11.32665 -10.91961 -10.77558 -9.62549 -8.57392 -8.30949 -6.35374 0.07113 0.41439 1.35117 1.37602 1.49979 2.33679 2.35525 2.77439 2.83879 3.04387 3.40597 3.91363 3.96325 4.06341 4.14322 4.29049 4.32289 4.42472 4.48319 4.62188 4.76786 4.87334 5.03061 5.08779 5.10852 5.12573 5.19080 5.44527 5.49301 5.58061 5.65246 5.76000 6.21951 6.26891 6.59687 6.72598 6.88068 7.29492 8.85940 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.038799 B = 0.003674 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.493644 B = 7618.807385 C = 7869.804564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.536 4.536 8 H 0.031 0.969 9 C -0.012 4.012 10 C -0.092 4.092 11 C -0.107 4.107 12 C 0.069 3.931 13 O -0.335 6.335 14 C -0.052 4.052 15 C 0.223 3.777 16 N -0.858 5.858 17 C -0.196 4.196 18 C -0.037 4.037 19 C -0.209 4.209 20 C 0.097 3.903 21 F -0.150 7.150 22 H 0.267 0.733 23 H 0.018 0.982 24 H 0.023 0.977 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.415 0.585 32 H 0.403 0.597 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.147 -16.018 -3.944 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.049 4.049 10 C -0.129 4.129 11 C -0.144 4.144 12 C -0.006 4.006 13 O -0.252 6.252 14 C -0.101 4.101 15 C 0.114 3.886 16 N -0.397 5.397 17 C -0.219 4.219 18 C -0.056 4.056 19 C -0.229 4.229 20 C 0.077 3.923 21 F -0.129 7.129 22 H 0.075 0.925 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.246 0.754 32 H 0.232 0.768 33 H 0.179 0.821 34 H 0.190 0.810 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 23.071 -15.713 -3.902 28.185 hybrid contribution -0.822 1.052 0.191 1.349 sum 22.249 -14.660 -3.711 26.902 Atomic orbital electron populations 1.70074 1.08330 1.28220 1.52676 1.26059 0.95663 1.03671 0.94057 0.85617 0.79406 0.78032 0.79357 1.18830 1.20925 1.17173 1.21528 0.92229 0.93145 1.50458 0.95040 1.19526 0.93780 0.94936 0.96689 1.21233 0.93118 0.97564 1.01032 1.21476 0.95000 0.94714 1.03237 1.22817 0.78920 0.98246 1.00587 1.86149 1.20048 1.24775 1.94240 1.18400 1.09183 0.91064 0.91495 1.18082 0.92939 0.91904 0.85651 1.42498 1.67446 1.25240 1.04540 1.21008 1.05607 0.94496 1.00811 1.21211 0.94784 0.99865 0.89737 1.21160 1.05841 0.94205 1.01740 1.18327 1.00696 0.93264 0.80015 1.91450 1.91215 1.83843 1.46373 0.92451 0.96380 0.95884 0.92516 0.93421 0.91886 0.90397 0.92025 0.93975 0.75354 0.76815 0.82054 0.81025 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 2 C 0.00 0.12 5.47 84.65 0.46 0.59 16 3 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 7 C -0.54 -31.72 9.66 25.60 0.25 -31.48 16 8 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 9 C -0.01 -0.57 4.04 29.84 0.12 -0.45 16 10 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 11 C -0.11 -3.47 5.58 30.59 0.17 -3.30 16 12 C 0.07 2.04 6.06 71.98 0.44 2.47 16 13 O -0.33 -10.06 9.17 -94.32 -0.86 -10.92 16 14 C -0.05 -1.37 5.75 22.62 0.13 -1.24 16 15 C 0.22 4.37 6.77 38.21 0.26 4.63 16 16 N -0.86 -13.26 9.09 -51.07 -0.46 -13.72 16 17 C -0.20 -2.69 9.89 22.39 0.22 -2.47 16 18 C -0.04 -0.47 10.04 22.27 0.22 -0.25 16 19 C -0.21 -3.80 10.02 22.33 0.22 -3.57 16 20 C 0.10 2.52 7.30 22.43 0.16 2.68 16 21 F -0.15 -4.58 17.11 44.97 0.77 -3.81 16 22 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 23 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16 24 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.41 3.78 8.85 -92.71 -0.82 2.96 16 32 H 0.40 7.00 8.19 -92.70 -0.76 6.24 16 33 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -72.07 304.42 3.91 -68.16 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -0.53 Total: 9.71 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 2.82 Total: -35.87 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -0.16 Total: -74.29 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.86 Total: -10.92 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.77 Total: -3.81 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -72.07 3.91 -68.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385785975.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.069 kcal (2) G-P(sol) polarization free energy of solvation -72.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds