Wall clock time and date at job start Mon Mar 30 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48498 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47233 * 300.00164 * 3 2 1 6 6 H 1.48504 * 109.47158 * 60.00003 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.36016 * 116.99777 * 179.97438 * 13 12 11 15 15 C 1.38515 * 120.06486 * 359.72979 * 14 13 12 16 16 C 1.38460 * 119.99347 * 179.76805 * 15 14 13 17 17 F 1.35095 * 119.93605 * 180.22972 * 16 15 14 18 18 C 1.38446 * 120.12652 * 0.50333 * 16 15 14 19 19 C 1.38242 * 120.13602 * 359.74983 * 18 16 15 20 20 C 1.38689 * 120.00080 * 359.97438 * 19 18 16 21 21 N 1.40118 * 120.06325 * 179.97438 * 20 19 18 22 22 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 24 24 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 25 25 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 28 28 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 29 29 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 30 30 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 31 31 H 1.07999 * 120.00184 * 359.97438 * 15 14 13 32 32 H 1.07996 * 119.92946 * 179.72456 * 18 16 15 33 33 H 1.08002 * 119.99951 * 179.97438 * 19 18 16 34 34 H 0.96998 * 120.00076 * 180.02562 * 21 20 19 35 35 H 0.96997 * 119.99478 * 0.03174 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 8 1.7601 -7.3875 -0.0018 14 6 2.5009 -8.5282 -0.0029 15 6 3.8842 -8.4573 -0.0096 16 6 4.6369 -9.6194 -0.0058 17 9 5.9860 -9.5488 -0.0077 18 6 4.0096 -10.8536 -0.0059 19 6 2.6294 -10.9306 -0.0045 20 6 1.8701 -9.7700 -0.0025 21 7 0.4710 -9.8466 -0.0016 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5570 0.8898 25 1 2.8726 -3.6046 0.8877 26 1 2.8713 -3.6039 -0.8923 27 1 0.8528 -5.0446 -0.8905 28 1 0.8546 -5.0450 0.8894 29 1 3.1007 -6.0922 -0.8922 30 1 3.1019 -6.0922 0.8878 31 1 4.3756 -7.4956 -0.0144 32 1 4.5999 -11.7580 -0.0075 33 1 2.1423 -11.8946 -0.0050 34 1 -0.0592 -9.0343 -0.0006 35 1 0.0327 -10.7119 -0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385799080.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:50 Heat of formation + Delta-G solvation = -83.417428 kcal Electronic energy + Delta-G solvation = -17492.719022 eV Core-core repulsion = 14404.475405 eV Total energy + Delta-G solvation = -3088.243617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.82220 -40.24569 -37.62451 -34.77492 -34.34996 -32.45268 -30.42970 -29.11954 -27.91703 -25.25697 -23.18663 -22.27801 -21.44238 -20.17576 -18.40381 -17.53026 -17.02991 -16.23950 -16.22812 -16.08854 -15.46951 -15.16176 -14.55518 -14.36907 -14.13422 -14.09980 -12.99880 -12.87994 -12.72753 -12.37573 -11.80475 -11.64014 -11.47172 -11.33216 -10.95389 -10.56831 -10.53314 -10.48584 -10.46370 -9.73795 -9.38820 -9.08204 -8.80745 -8.36810 -7.38581 -6.01652 -4.04187 1.09461 1.24590 3.13068 3.30160 3.37721 3.41951 3.51859 3.70316 4.27642 4.44888 4.57713 4.85275 5.00918 5.16821 5.23176 5.26514 5.34374 5.54817 5.60607 5.88644 5.94919 5.96355 6.04259 6.08804 6.34995 6.60574 6.66806 6.81331 7.00900 7.11249 7.49400 7.63999 7.65550 7.78892 7.98252 8.40263 9.03153 9.60139 11.09739 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.036059 B = 0.003320 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.324006 B = 8432.057882 C = 9177.330151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.061 3.939 13 O -0.314 6.314 14 C 0.092 3.908 15 C -0.200 4.200 16 C 0.075 3.925 17 F -0.144 7.144 18 C -0.144 4.144 19 C -0.146 4.146 20 C 0.183 3.817 21 N -0.872 5.872 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.406 0.594 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 -22.408 -0.009 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.014 4.014 13 O -0.228 6.228 14 C 0.043 3.957 15 C -0.221 4.221 16 C 0.054 3.946 17 F -0.123 7.123 18 C -0.163 4.163 19 C -0.169 4.169 20 C 0.079 3.921 21 N -0.413 5.413 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.236 0.764 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.782 -22.226 -0.010 22.545 hybrid contribution 0.554 1.052 0.000 1.189 sum 4.336 -21.173 -0.010 21.613 Atomic orbital electron populations 1.69976 1.06063 1.26518 1.50925 1.25035 0.94861 0.99311 0.95323 0.86537 0.80121 0.83763 0.77590 1.19723 1.21003 1.20997 1.21297 0.93091 0.91074 1.50495 0.92614 1.19091 0.93949 0.91135 0.97392 1.21591 0.99288 0.93057 1.00598 1.21691 0.98006 0.92512 1.03139 1.23100 0.96079 0.81027 1.01176 1.86029 1.35526 1.12562 1.88696 1.18204 0.89200 0.86042 1.02266 1.21033 0.92841 0.99154 1.09049 1.17140 0.76759 0.93775 1.06934 1.91467 1.29212 1.97241 1.94396 1.20728 0.94608 0.96348 1.04646 1.20206 0.92706 0.96383 1.07615 1.17190 0.84985 0.90649 0.99297 1.42331 1.02512 1.11107 1.85365 0.93038 0.96473 0.96468 0.93100 0.93091 0.91326 0.91330 0.92113 0.92102 0.84070 0.84902 0.84739 0.76444 0.77454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.14 5.15 -26.73 -0.14 -2.28 16 11 C -0.12 -1.92 5.58 -26.73 -0.15 -2.07 16 12 C 0.06 0.85 4.74 37.16 0.18 1.03 16 13 O -0.31 -4.40 9.38 -19.79 -0.19 -4.59 16 14 C 0.09 1.19 6.70 -39.09 -0.26 0.93 16 15 C -0.20 -2.53 9.01 -39.40 -0.36 -2.89 16 16 C 0.08 0.91 7.30 -39.42 -0.29 0.62 16 17 F -0.14 -1.85 17.26 2.25 0.04 -1.81 16 18 C -0.14 -1.44 10.02 -39.50 -0.40 -1.84 16 19 C -0.15 -1.35 9.89 -39.41 -0.39 -1.74 16 20 C 0.18 2.01 6.77 -83.51 -0.57 1.44 16 21 N -0.87 -7.60 9.10 32.53 0.30 -7.31 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 30 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 31 H 0.14 1.71 6.30 -52.49 -0.33 1.37 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.41 3.72 8.19 -40.82 -0.33 3.38 16 35 H 0.40 2.35 8.85 -40.82 -0.36 1.98 16 LS Contribution 304.28 15.07 4.59 4.59 Total: -1.00 -30.91 304.28 -7.21 -38.13 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.75 Total: 0.51 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.92 Total: -19.94 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 1.03 Total: -33.51 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.19 Total: -4.59 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.91 -7.21 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385799080.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.292 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds