Wall clock time and date at job start Mon Mar 30 2020 06:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48498 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47233 * 300.00164 * 3 2 1 6 6 H 1.48504 * 109.47158 * 60.00003 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.36016 * 116.99777 * 179.97438 * 13 12 11 15 15 C 1.38515 * 120.06486 * 359.72979 * 14 13 12 16 16 C 1.38460 * 119.99347 * 179.76805 * 15 14 13 17 17 F 1.35095 * 119.93605 * 180.22972 * 16 15 14 18 18 C 1.38446 * 120.12652 * 0.50333 * 16 15 14 19 19 C 1.38242 * 120.13602 * 359.74983 * 18 16 15 20 20 C 1.38689 * 120.00080 * 359.97438 * 19 18 16 21 21 N 1.40118 * 120.06325 * 179.97438 * 20 19 18 22 22 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 24 24 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 25 25 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 28 28 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 29 29 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 30 30 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 31 31 H 1.07999 * 120.00184 * 359.97438 * 15 14 13 32 32 H 1.07996 * 119.92946 * 179.72456 * 18 16 15 33 33 H 1.08002 * 119.99951 * 179.97438 * 19 18 16 34 34 H 0.96998 * 120.00076 * 180.02562 * 21 20 19 35 35 H 0.96997 * 119.99478 * 0.03174 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 8 1.7601 -7.3875 -0.0018 14 6 2.5009 -8.5282 -0.0029 15 6 3.8842 -8.4573 -0.0096 16 6 4.6369 -9.6194 -0.0058 17 9 5.9860 -9.5488 -0.0077 18 6 4.0096 -10.8536 -0.0059 19 6 2.6294 -10.9306 -0.0045 20 6 1.8701 -9.7700 -0.0025 21 7 0.4710 -9.8466 -0.0016 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5570 0.8898 25 1 2.8726 -3.6046 0.8877 26 1 2.8713 -3.6039 -0.8923 27 1 0.8528 -5.0446 -0.8905 28 1 0.8546 -5.0450 0.8894 29 1 3.1007 -6.0922 -0.8922 30 1 3.1019 -6.0922 0.8878 31 1 4.3756 -7.4956 -0.0144 32 1 4.5999 -11.7580 -0.0075 33 1 2.1423 -11.8946 -0.0050 34 1 -0.0592 -9.0343 -0.0006 35 1 0.0327 -10.7119 -0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385799080.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:49 Heat of formation + Delta-G solvation = -102.179084 kcal Electronic energy + Delta-G solvation = -17493.532588 eV Core-core repulsion = 14404.475405 eV Total energy + Delta-G solvation = -3089.057183 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.74070 -41.16052 -38.58677 -36.46896 -35.15016 -34.39367 -31.43219 -30.62090 -28.87039 -26.92165 -24.51586 -23.15817 -22.78110 -21.76660 -19.37397 -18.51986 -18.28071 -17.81485 -17.34430 -17.03249 -16.50106 -16.44766 -15.96478 -15.55335 -15.42012 -14.98888 -14.45579 -14.03608 -13.88891 -13.74105 -13.44014 -13.13257 -12.80559 -12.71529 -12.40453 -12.29054 -12.04070 -11.81887 -11.39463 -11.35901 -11.33007 -11.12895 -10.56540 -9.66674 -8.20944 -8.20102 -6.32046 0.25651 0.39156 1.40056 1.40212 1.53680 2.12016 2.41237 2.68032 2.97845 3.12427 3.42074 3.73826 3.96243 3.98609 4.11322 4.15098 4.32045 4.44854 4.52185 4.68181 4.77916 4.84583 5.09997 5.10434 5.12629 5.22371 5.24895 5.28488 5.52301 5.74025 5.78008 5.85202 6.19264 6.24032 6.62904 6.85560 7.02197 7.37464 8.91200 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.036059 B = 0.003320 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.324006 B = 8432.057882 C = 9177.330151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.106 4.106 12 C 0.070 3.930 13 O -0.324 6.324 14 C 0.062 3.938 15 C -0.209 4.209 16 C 0.050 3.950 17 F -0.153 7.153 18 C -0.133 4.133 19 C -0.138 4.138 20 C 0.180 3.820 21 N -0.864 5.864 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.007 1.007 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.170 0.830 34 H 0.404 0.596 35 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 -23.783 -0.009 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.133 4.133 11 C -0.144 4.144 12 C -0.005 4.005 13 O -0.238 6.238 14 C 0.014 3.986 15 C -0.229 4.229 16 C 0.029 3.971 17 F -0.132 7.132 18 C -0.153 4.153 19 C -0.161 4.161 20 C 0.074 3.926 21 N -0.406 5.406 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.176 0.824 33 H 0.187 0.813 34 H 0.233 0.767 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.641 -23.636 -0.010 24.087 hybrid contribution 0.230 1.380 0.000 1.399 sum 4.872 -22.256 -0.010 22.783 Atomic orbital electron populations 1.70105 1.07812 1.27725 1.51790 1.26003 0.95794 1.03447 0.94766 0.85389 0.79100 0.78722 0.77779 1.18528 1.20381 1.20369 1.21763 0.93643 0.92420 1.50367 0.92056 1.19017 0.94481 0.93005 0.94985 1.21361 0.98142 0.92622 1.01201 1.21457 0.98063 0.92094 1.02770 1.22841 0.95065 0.80615 1.01959 1.85963 1.35767 1.12734 1.89376 1.18417 0.89434 0.86183 1.04611 1.21089 0.93015 0.99484 1.09292 1.17383 0.76517 0.94577 1.08646 1.91440 1.29806 1.97327 1.94639 1.21080 0.95199 0.96410 1.02578 1.20600 0.92378 0.97210 1.05952 1.17454 0.85987 0.90487 0.98628 1.42350 1.01785 1.11937 1.84505 0.92765 0.98902 0.98896 0.92439 0.92430 0.91738 0.91742 0.91374 0.91367 0.84370 0.82389 0.81268 0.76704 0.75743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 3 Si 0.97 44.41 29.54 68.60 2.03 46.43 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -31.10 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.82 5.15 30.59 0.16 -3.66 16 11 C -0.11 -3.53 5.58 30.59 0.17 -3.36 16 12 C 0.07 1.93 4.74 71.98 0.34 2.28 16 13 O -0.32 -8.91 9.38 -93.73 -0.88 -9.79 16 14 C 0.06 1.56 6.70 22.59 0.15 1.71 16 15 C -0.21 -5.17 9.01 22.39 0.20 -4.96 16 16 C 0.05 1.16 7.30 22.37 0.16 1.32 16 17 F -0.15 -3.83 17.26 44.97 0.78 -3.05 16 18 C -0.13 -2.33 10.02 22.32 0.22 -2.10 16 19 C -0.14 -2.14 9.89 22.38 0.22 -1.92 16 20 C 0.18 3.60 6.77 38.18 0.26 3.85 16 21 N -0.86 -13.34 9.10 -51.00 -0.46 -13.80 16 22 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 23 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 24 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 25 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.07 1.77 7.65 -2.39 -0.02 1.76 16 30 H 0.07 1.78 7.68 -2.39 -0.02 1.76 16 31 H 0.14 3.34 6.30 -2.91 -0.02 3.32 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.40 6.87 8.19 -92.71 -0.76 6.12 16 35 H 0.41 3.77 8.85 -92.71 -0.82 2.95 16 Total: -1.00 -66.80 304.28 4.01 -62.79 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -0.47 Total: 10.39 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 2.73 Total: -36.07 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -0.18 Total: -70.70 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.88 Total: -9.79 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -66.80 4.01 -62.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385799080.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.389 kcal (2) G-P(sol) polarization free energy of solvation -66.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds