Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38275 * 119.91843 * 2 1 4 4 C 1.38156 * 120.10828 * 179.72631 * 3 2 1 5 5 C 1.38823 * 119.95013 * 0.57379 * 4 3 2 6 6 N 1.39851 * 120.08160 * 179.72905 * 5 4 3 7 7 C 1.46504 * 119.99479 * 359.71693 * 6 5 4 8 8 C 1.53006 * 109.46883 * 180.02562 * 7 6 5 9 9 O 1.42897 * 109.46881 * 65.00211 * 8 7 6 10 10 C 1.42904 * 114.00084 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47195 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99950 * 0.02562 * 11 10 9 13 13 C 1.37869 * 119.99953 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99765 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00180 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46649 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47247 * 120.00370 * 15 13 11 18 18 H 1.48500 * 109.46938 * 240.00430 * 15 13 11 19 19 C 1.39072 * 119.84186 * 359.44567 * 5 4 3 20 20 F 1.35104 * 120.05795 * 180.27477 * 19 5 4 21 21 C 1.38284 * 119.88910 * 0.26062 * 19 5 4 22 22 H 1.09001 * 109.46769 * 269.97898 * 1 2 3 23 23 H 1.09002 * 109.47136 * 29.97951 * 1 2 3 24 24 H 1.09002 * 109.46937 * 149.97905 * 1 2 3 25 25 H 1.08002 * 119.94530 * 359.97438 * 3 2 1 26 26 H 1.08004 * 120.02389 * 180.30179 * 4 3 2 27 27 H 0.96992 * 120.00554 * 179.72158 * 6 5 4 28 28 H 1.09001 * 109.46891 * 60.00479 * 7 6 5 29 29 H 1.08993 * 109.47378 * 299.99851 * 7 6 5 30 30 H 1.08992 * 109.47046 * 185.00109 * 8 7 6 31 31 H 1.08997 * 109.47395 * 305.00649 * 8 7 6 32 32 H 1.08997 * 109.46649 * 300.00180 * 10 9 8 33 33 H 1.08996 * 109.47076 * 59.99959 * 10 9 8 34 34 H 0.97000 * 119.99853 * 179.97438 * 14 13 11 35 35 H 1.07994 * 119.98039 * 179.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1985 0.0000 4 6 3.5782 1.2031 0.0057 5 6 4.2753 0.0026 -0.0006 6 7 5.6738 0.0040 -0.0006 7 6 6.4048 1.2736 -0.0001 8 6 7.9095 0.9957 -0.0008 9 8 8.2739 0.3500 -1.2224 10 6 9.6662 0.0449 -1.3256 11 6 9.9361 -0.6296 -2.6461 12 1 9.1256 -0.8070 -3.3374 13 6 11.2179 -1.0191 -2.9719 14 7 12.2049 -0.8025 -2.1302 15 14 11.5524 -1.8557 -4.6082 16 1 10.2826 -1.9832 -5.3676 17 1 12.5185 -1.0438 -5.3909 18 1 12.1218 -3.2058 -4.3666 19 6 3.5796 -1.2016 -0.0010 20 9 4.2536 -2.3726 -0.0015 21 6 2.1967 -1.1986 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6544 2.1325 -0.0004 26 1 4.1155 2.1400 0.0106 27 1 6.1597 -0.8354 -0.0009 28 1 6.1409 1.8445 0.8901 29 1 6.1410 1.8452 -0.8899 30 1 8.4527 1.9363 0.0891 31 1 8.1600 0.3495 0.8404 32 1 10.2455 0.9660 -1.2634 33 1 9.9536 -0.6208 -0.5118 34 1 13.1067 -1.0768 -2.3592 35 1 1.6550 -2.1328 -0.0012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385806465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = -79.850067 kcal Electronic energy + Delta-G solvation = -17720.291024 eV Core-core repulsion = 14632.202100 eV Total energy + Delta-G solvation = -3088.088924 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.61641 -39.33808 -37.27295 -35.53558 -32.82755 -31.70162 -30.53715 -29.07028 -27.00181 -25.45444 -23.42720 -22.38818 -21.69305 -20.91567 -17.68729 -16.83209 -16.46088 -16.29929 -15.86853 -15.43587 -15.02377 -14.55747 -14.32896 -14.00957 -13.81958 -13.67456 -13.37676 -13.26235 -13.01800 -12.14667 -11.96919 -11.86750 -11.67141 -11.50042 -11.04338 -10.85089 -10.84392 -10.70636 -10.09006 -9.89469 -9.16119 -8.93792 -8.80935 -8.27293 -7.23676 -6.15896 -4.17926 1.25102 1.45677 3.26897 3.33506 3.40261 3.48756 3.68413 4.29696 4.36871 4.70659 4.71926 4.83447 5.12715 5.20923 5.24934 5.26531 5.46660 5.49159 5.49668 5.60141 5.79282 5.90257 5.93169 6.04009 6.06614 6.12392 6.28665 6.55758 6.81843 6.99509 7.32777 7.35193 7.74216 7.82017 8.07637 8.46376 8.94913 9.47375 10.95606 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.032570 B = 0.003842 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.479927 B = 7285.770162 C = 7704.596420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.134 4.134 3 C -0.078 4.078 4 C -0.178 4.178 5 C 0.196 3.804 6 N -0.730 5.730 7 C 0.129 3.871 8 C 0.049 3.951 9 O -0.393 6.393 10 C 0.195 3.805 11 C -0.516 4.516 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.017 3.983 20 F -0.143 7.143 21 C -0.105 4.105 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.410 0.590 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.264 0.736 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.794 4.045 6.792 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.136 4.136 3 C -0.097 4.097 4 C -0.201 4.201 5 C 0.089 3.911 6 N -0.359 5.359 7 C 0.005 3.995 8 C -0.029 4.029 9 O -0.313 6.313 10 C 0.121 3.879 11 C -0.554 4.554 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.007 4.007 20 F -0.122 7.122 21 C -0.124 4.124 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.142 0.858 26 H 0.148 0.852 27 H 0.246 0.754 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.563 4.127 6.660 21.073 hybrid contribution 1.011 -0.891 -0.577 1.466 sum -18.552 3.237 6.083 19.790 Atomic orbital electron populations 1.20638 0.91062 1.02417 1.01840 1.19414 0.95934 0.92170 1.06097 1.20791 0.93258 0.97466 0.98171 1.20529 0.94204 0.95946 1.09406 1.17926 0.84684 0.92776 0.95714 1.44716 1.01630 1.09396 1.80118 1.21455 0.90942 0.85931 1.01140 1.22471 0.93023 0.97554 0.89882 1.87905 1.29683 1.78668 1.35076 1.20239 0.75374 0.94829 0.97491 1.21082 0.93960 1.38386 1.01965 0.91479 1.24954 0.95634 0.95998 0.97907 1.69970 1.00446 1.47392 1.35937 0.86269 0.78400 0.78973 0.82815 1.19447 1.20785 1.20778 1.17153 0.90057 0.80011 1.13487 1.91460 1.80361 1.45551 1.94805 1.20743 0.91415 0.99024 1.01237 0.91735 0.91793 0.91941 0.85810 0.85226 0.75369 0.91389 0.91361 0.92656 0.93786 0.97573 0.97627 0.92646 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.13 -1.42 5.88 -104.59 -0.62 -2.03 16 3 C -0.08 -0.82 9.69 -39.60 -0.38 -1.21 16 4 C -0.18 -2.16 9.31 -39.40 -0.37 -2.53 16 5 C 0.20 2.83 6.66 -83.67 -0.56 2.27 16 6 N -0.73 -11.33 5.68 -58.56 -0.33 -11.66 16 7 C 0.13 1.84 5.30 -4.04 -0.02 1.82 16 8 C 0.05 0.85 6.07 37.16 0.23 1.07 16 9 O -0.39 -9.23 10.27 -35.23 -0.36 -9.59 16 10 C 0.19 5.28 5.69 36.01 0.20 5.48 16 11 C -0.52 -15.20 9.43 -34.44 -0.32 -15.53 16 12 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 15 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.02 0.24 7.31 -39.26 -0.29 -0.04 16 20 F -0.14 -2.30 16.64 2.25 0.04 -2.26 16 21 C -0.10 -1.27 9.67 -39.55 -0.38 -1.65 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 24 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 25 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 26 H 0.13 1.38 6.74 -52.48 -0.35 1.02 16 27 H 0.41 6.94 7.96 -40.82 -0.33 6.62 16 28 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 29 H 0.07 0.98 7.96 -51.93 -0.41 0.57 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -31.51 306.95 -7.41 -38.92 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.85 Total: 0.35 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.25 Total: -11.22 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.40 Total: -37.74 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.36 Total: -9.59 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.51 -7.41 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385806465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.927 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds