Wall clock time and date at job start Mon Mar 30 2020 06:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38275 * 119.91843 * 2 1 4 4 C 1.38156 * 120.10828 * 179.72631 * 3 2 1 5 5 C 1.38823 * 119.95013 * 0.57379 * 4 3 2 6 6 N 1.39851 * 120.08160 * 179.72905 * 5 4 3 7 7 C 1.46504 * 119.99479 * 359.71693 * 6 5 4 8 8 C 1.53006 * 109.46883 * 180.02562 * 7 6 5 9 9 O 1.42897 * 109.46881 * 65.00211 * 8 7 6 10 10 C 1.42904 * 114.00084 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47195 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99950 * 0.02562 * 11 10 9 13 13 C 1.37869 * 119.99953 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99765 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00180 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46649 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47247 * 120.00370 * 15 13 11 18 18 H 1.48500 * 109.46938 * 240.00430 * 15 13 11 19 19 C 1.39072 * 119.84186 * 359.44567 * 5 4 3 20 20 F 1.35104 * 120.05795 * 180.27477 * 19 5 4 21 21 C 1.38284 * 119.88910 * 0.26062 * 19 5 4 22 22 H 1.09001 * 109.46769 * 269.97898 * 1 2 3 23 23 H 1.09002 * 109.47136 * 29.97951 * 1 2 3 24 24 H 1.09002 * 109.46937 * 149.97905 * 1 2 3 25 25 H 1.08002 * 119.94530 * 359.97438 * 3 2 1 26 26 H 1.08004 * 120.02389 * 180.30179 * 4 3 2 27 27 H 0.96992 * 120.00554 * 179.72158 * 6 5 4 28 28 H 1.09001 * 109.46891 * 60.00479 * 7 6 5 29 29 H 1.08993 * 109.47378 * 299.99851 * 7 6 5 30 30 H 1.08992 * 109.47046 * 185.00109 * 8 7 6 31 31 H 1.08997 * 109.47395 * 305.00649 * 8 7 6 32 32 H 1.08997 * 109.46649 * 300.00180 * 10 9 8 33 33 H 1.08996 * 109.47076 * 59.99959 * 10 9 8 34 34 H 0.97000 * 119.99853 * 179.97438 * 14 13 11 35 35 H 1.07994 * 119.98039 * 179.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1985 0.0000 4 6 3.5782 1.2031 0.0057 5 6 4.2753 0.0026 -0.0006 6 7 5.6738 0.0040 -0.0006 7 6 6.4048 1.2736 -0.0001 8 6 7.9095 0.9957 -0.0008 9 8 8.2739 0.3500 -1.2224 10 6 9.6662 0.0449 -1.3256 11 6 9.9361 -0.6296 -2.6461 12 1 9.1256 -0.8070 -3.3374 13 6 11.2179 -1.0191 -2.9719 14 7 12.2049 -0.8025 -2.1302 15 14 11.5524 -1.8557 -4.6082 16 1 10.2826 -1.9832 -5.3676 17 1 12.5185 -1.0438 -5.3909 18 1 12.1218 -3.2058 -4.3666 19 6 3.5796 -1.2016 -0.0010 20 9 4.2536 -2.3726 -0.0015 21 6 2.1967 -1.1986 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6544 2.1325 -0.0004 26 1 4.1155 2.1400 0.0106 27 1 6.1597 -0.8354 -0.0009 28 1 6.1409 1.8445 0.8901 29 1 6.1410 1.8452 -0.8899 30 1 8.4527 1.9363 0.0891 31 1 8.1600 0.3495 0.8404 32 1 10.2455 0.9660 -1.2634 33 1 9.9536 -0.6208 -0.5118 34 1 13.1067 -1.0768 -2.3592 35 1 1.6550 -2.1328 -0.0012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385806465.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:40 Heat of formation + Delta-G solvation = -99.626431 kcal Electronic energy + Delta-G solvation = -17721.148592 eV Core-core repulsion = 14632.202100 eV Total energy + Delta-G solvation = -3088.946492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.75631 -40.30366 -38.86785 -36.78768 -34.95335 -32.77089 -31.46111 -30.39321 -28.91132 -26.40948 -24.71455 -24.32991 -22.81240 -21.90898 -18.89838 -18.53161 -17.81296 -17.59652 -17.39798 -16.65359 -16.48713 -16.37564 -15.56347 -15.15947 -15.00297 -14.81984 -14.58889 -14.25732 -14.17799 -13.70163 -13.34631 -13.00686 -12.85800 -12.75188 -12.63665 -12.50788 -12.37894 -11.95193 -11.93364 -11.33278 -10.94871 -10.84084 -10.31393 -9.75579 -8.36955 -8.27612 -6.49244 0.30645 0.52407 1.37113 1.38260 1.53000 2.30533 2.38218 2.75933 2.97088 3.09024 3.39003 3.82723 3.97984 4.05372 4.18309 4.34364 4.41697 4.49049 4.62071 4.68330 4.78344 4.80343 4.87438 4.97225 5.08060 5.12853 5.17898 5.28401 5.41420 5.50084 5.70321 5.90112 5.91613 6.29951 6.47082 6.60199 6.75814 7.22838 8.75438 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.032570 B = 0.003842 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.479927 B = 7285.770162 C = 7704.596420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.129 4.129 3 C -0.074 4.074 4 C -0.179 4.179 5 C 0.171 3.829 6 N -0.746 5.746 7 C 0.140 3.860 8 C 0.040 3.960 9 O -0.409 6.409 10 C 0.210 3.790 11 C -0.550 4.550 12 H 0.058 0.942 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.982 3.018 16 H -0.267 1.267 17 H -0.269 1.269 18 H -0.271 1.271 19 C -0.017 4.017 20 F -0.161 7.161 21 C -0.112 4.112 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.158 0.842 26 H 0.146 0.854 27 H 0.397 0.603 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.046 0.954 32 H -0.009 1.009 33 H -0.014 1.014 34 H 0.272 0.728 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.616 4.955 6.333 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.131 4.131 3 C -0.093 4.093 4 C -0.202 4.202 5 C 0.066 3.934 6 N -0.375 5.375 7 C 0.016 3.984 8 C -0.037 4.037 9 O -0.329 6.329 10 C 0.135 3.865 11 C -0.588 4.588 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.568 5.568 15 Si 0.805 3.195 16 H -0.191 1.191 17 H -0.194 1.194 18 H -0.196 1.196 19 C -0.040 4.040 20 F -0.141 7.141 21 C -0.131 4.131 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.175 0.825 26 H 0.163 0.837 27 H 0.231 0.769 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.009 0.991 33 H 0.004 0.996 34 H 0.081 0.919 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.423 5.062 6.221 22.875 hybrid contribution 1.449 -1.113 -0.351 1.861 sum -19.974 3.948 5.870 21.190 Atomic orbital electron populations 1.20717 0.88537 1.03595 1.03022 1.19870 0.97737 0.91553 1.03951 1.21222 0.92736 0.98874 0.96437 1.20832 0.95121 0.95607 1.08656 1.18199 0.84242 0.93700 0.97218 1.44761 1.02291 1.08996 1.81422 1.21455 0.88279 0.85846 1.02777 1.22814 0.95628 0.97687 0.87559 1.87854 1.27316 1.79481 1.38260 1.19834 0.77208 0.93422 0.96077 1.21404 0.94467 1.39903 1.03014 0.92385 1.25937 0.95063 0.96147 1.01966 1.70062 1.01064 1.47746 1.37908 0.85150 0.78436 0.78152 0.77762 1.19136 1.19354 1.19632 1.17596 0.91192 0.79656 1.15574 1.91400 1.80918 1.46567 1.95171 1.21020 0.90532 1.00556 1.00961 0.90423 0.90151 0.91329 0.82490 0.83662 0.76878 0.87791 0.91398 0.91120 0.93593 0.99081 0.99590 0.91949 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 10.01 71.23 0.71 -0.48 16 2 C -0.13 -2.41 5.88 -19.84 -0.12 -2.52 16 3 C -0.07 -1.34 9.69 22.26 0.22 -1.12 16 4 C -0.18 -4.02 9.31 22.39 0.21 -3.81 16 5 C 0.17 4.94 6.66 38.20 0.25 5.19 16 6 N -0.75 -23.50 5.68 -339.19 -1.93 -25.43 16 7 C 0.14 3.88 5.30 86.38 0.46 4.34 16 8 C 0.04 1.41 6.07 71.98 0.44 1.85 16 9 O -0.41 -19.76 10.27 -148.98 -1.53 -21.29 16 10 C 0.21 11.77 5.69 71.24 0.41 12.17 16 11 C -0.55 -33.23 9.43 25.60 0.24 -32.99 16 12 H 0.06 3.52 7.81 -2.91 -0.02 3.49 16 13 C 0.01 0.44 5.46 84.65 0.46 0.90 16 14 N -0.93 -55.96 13.29 21.44 0.28 -55.68 16 15 Si 0.98 44.99 29.54 68.60 2.03 47.01 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 C -0.02 -0.49 7.31 22.48 0.16 -0.33 16 20 F -0.16 -5.47 16.64 44.97 0.75 -4.73 16 21 C -0.11 -2.60 9.67 22.29 0.22 -2.39 16 22 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 24 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 25 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 26 H 0.15 2.70 6.74 -2.91 -0.02 2.68 16 27 H 0.40 14.17 7.96 -92.71 -0.74 13.43 16 28 H 0.10 2.14 7.94 -2.39 -0.02 2.12 16 29 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 34 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -69.30 306.95 3.61 -65.69 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.35 Total: 13.60 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 3.66 Total: -19.18 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -1.64 Total: -81.11 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -1.53 Total: -21.29 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.75 Total: -4.73 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.30 3.61 -65.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385806465.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.933 kcal (2) G-P(sol) polarization free energy of solvation -69.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds