Wall clock time and date at job start Mon Mar 30 2020 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38276 * 119.94342 * 2 1 4 4 C 1.38285 * 120.16252 * 180.27632 * 3 2 1 5 5 C 1.38279 * 120.04729 * 359.44563 * 4 3 2 6 6 F 1.35100 * 120.05941 * 180.25068 * 5 4 3 7 7 C 1.39078 * 119.89076 * 0.27913 * 5 4 3 8 8 N 1.39844 * 120.08616 * 180.02562 * 7 5 4 9 9 C 1.46502 * 120.00073 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46548 * 179.97438 * 9 8 7 11 11 O 1.42891 * 109.47290 * 65.00341 * 10 9 8 12 12 C 1.42898 * 114.00179 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47507 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99703 * 359.97438 * 13 12 11 15 15 C 1.37886 * 120.00080 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99657 * 179.97438 * 15 13 12 17 17 Si 1.86790 * 120.00054 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47349 * 89.99658 * 17 15 13 19 19 H 1.48504 * 109.47241 * 210.00004 * 17 15 13 20 20 H 1.48502 * 109.47377 * 330.00186 * 17 15 13 21 21 C 1.38150 * 119.94608 * 179.72296 * 2 1 3 22 22 H 1.09006 * 109.46762 * 270.27609 * 1 2 3 23 23 H 1.08999 * 109.47112 * 30.27459 * 1 2 3 24 24 H 1.08997 * 109.46928 * 150.27749 * 1 2 3 25 25 H 1.08005 * 119.92105 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.98019 * 179.72693 * 4 3 2 27 27 H 0.97005 * 119.99436 * 359.97438 * 8 7 5 28 28 H 1.08990 * 109.47086 * 299.99581 * 9 8 7 29 29 H 1.08997 * 109.47245 * 60.00281 * 9 8 7 30 30 H 1.09001 * 109.46805 * 185.00242 * 10 9 8 31 31 H 1.08998 * 109.47095 * 304.99346 * 10 9 8 32 32 H 1.09000 * 109.47268 * 299.99806 * 12 11 10 33 33 H 1.09003 * 109.47547 * 59.99489 * 12 11 10 34 34 H 0.97002 * 120.00048 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.02320 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5801 1.2035 -0.0058 5 6 4.2771 0.0092 0.0000 6 9 5.6281 0.0141 -0.0005 7 6 3.5850 -1.1971 0.0058 8 7 4.2858 -2.4073 0.0122 9 6 3.5549 -3.6770 0.0188 10 6 4.5508 -4.8386 0.0244 11 8 5.2934 -4.8235 1.2451 12 6 6.2564 -5.8738 1.3525 13 6 6.9774 -5.7613 2.6711 14 1 6.7256 -4.9670 3.3581 15 6 7.9584 -6.6726 3.0003 16 7 8.5878 -6.5741 4.1508 17 14 8.3942 -8.0460 1.8117 18 1 9.4734 -7.5880 0.9002 19 1 8.8607 -9.2316 2.5748 20 1 7.1951 -8.4105 1.0151 21 6 2.1967 -1.1970 0.0058 22 1 -0.3633 0.0050 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3633 -0.8924 -0.5095 25 1 1.6550 2.1323 0.0004 26 1 4.1162 2.1410 -0.0102 27 1 5.2558 -2.4060 0.0123 28 1 2.9284 -3.7309 0.9090 29 1 2.9284 -3.7403 -0.8709 30 1 4.0100 -5.7812 -0.0603 31 1 5.2344 -4.7350 -0.8183 32 1 5.7507 -6.8377 1.2957 33 1 6.9756 -5.7922 0.5375 34 1 9.2777 -7.2154 4.3827 35 1 1.6562 -2.1321 0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385810866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:40 Heat of formation + Delta-G solvation = -74.546726 kcal Electronic energy + Delta-G solvation = -17809.798801 eV Core-core repulsion = 14721.939846 eV Total energy + Delta-G solvation = -3087.858954 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -48.60259 -39.38115 -37.42060 -35.50050 -32.74407 -32.28243 -30.65960 -28.39515 -27.37510 -26.39022 -23.32233 -21.94257 -21.33778 -21.27975 -17.69419 -17.05160 -16.73458 -16.31980 -15.93032 -15.42756 -15.03831 -14.69749 -14.34538 -14.07046 -13.87305 -13.76857 -13.45344 -13.33995 -12.81073 -12.44659 -12.11077 -11.95464 -11.78418 -11.65847 -11.12908 -11.03765 -10.82408 -10.69329 -10.08846 -9.90505 -9.26053 -8.97835 -8.65452 -8.56737 -7.32886 -6.16194 -4.16122 1.21598 1.48158 3.20697 3.27743 3.28246 3.43316 3.67254 4.30473 4.39469 4.45125 4.70906 4.77928 5.13205 5.14259 5.14721 5.23991 5.36577 5.42181 5.46523 5.65728 5.70865 5.73727 5.80722 5.97195 6.00128 6.12160 6.30752 6.49034 6.54386 6.79802 6.90066 7.30792 7.52045 7.77687 7.89297 8.57700 8.94867 9.42094 10.96793 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.033744 B = 0.004011 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.577219 B = 6978.322025 C = 7364.242765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.163 4.163 4 C -0.101 4.101 5 C 0.009 3.991 6 F -0.143 7.143 7 C 0.203 3.797 8 N -0.731 5.731 9 C 0.130 3.870 10 C 0.045 3.955 11 O -0.378 6.378 12 C 0.169 3.831 13 C -0.522 4.522 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.893 5.893 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.267 1.267 21 C -0.182 4.182 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.124 0.876 26 H 0.131 0.869 27 H 0.410 0.590 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.004 0.996 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.000 11.652 -11.809 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.049 4.049 3 C -0.184 4.184 4 C -0.121 4.121 5 C -0.015 4.015 6 F -0.122 7.122 7 C 0.096 3.904 8 N -0.359 5.359 9 C 0.006 3.994 10 C -0.033 4.033 11 O -0.297 6.297 12 C 0.094 3.906 13 C -0.560 4.560 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.531 5.531 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.205 4.205 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.142 0.858 26 H 0.149 0.851 27 H 0.247 0.753 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.928 11.474 -11.537 22.082 hybrid contribution 1.115 -1.032 -0.684 1.666 sum -13.813 10.442 -12.221 21.194 Atomic orbital electron populations 1.20784 0.91083 1.02664 1.02438 1.19672 0.95898 0.92458 0.96896 1.20552 0.92868 0.97589 1.07368 1.20870 0.94792 0.96246 1.00160 1.17178 0.76958 0.93202 1.14185 1.91458 1.28687 1.97226 1.94856 1.17887 0.91953 0.85360 0.95189 1.44693 1.09092 1.01913 1.80234 1.21428 0.94536 0.82140 1.01316 1.22557 0.94336 0.96747 0.89709 1.87962 1.53117 1.53400 1.35253 1.20630 0.86605 0.85532 0.97822 1.20871 1.18784 1.15025 1.01310 0.89956 1.24772 0.95439 0.97386 0.95321 1.69872 1.24724 1.36855 1.21687 0.86840 0.79281 0.82136 0.81400 1.19898 1.20692 1.19147 1.20390 0.90931 0.98588 1.10588 0.90989 0.91512 0.91549 0.85801 0.85132 0.75329 0.91205 0.91272 0.92496 0.93621 0.97792 0.98319 0.92278 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.05 -0.51 5.88 -104.64 -0.62 -1.13 16 3 C -0.16 -1.71 9.69 -39.55 -0.38 -2.10 16 4 C -0.10 -1.21 10.02 -39.55 -0.40 -1.60 16 5 C 0.01 0.12 7.31 -39.25 -0.29 -0.16 16 6 F -0.14 -2.31 16.64 2.25 0.04 -2.27 16 7 C 0.20 2.91 6.66 -83.67 -0.56 2.35 16 8 N -0.73 -11.08 5.68 -58.56 -0.33 -11.41 16 9 C 0.13 1.77 5.30 -4.04 -0.02 1.75 16 10 C 0.04 0.72 6.07 37.16 0.23 0.95 16 11 O -0.38 -8.52 10.27 -35.23 -0.36 -8.88 16 12 C 0.17 4.23 4.76 36.00 0.17 4.40 16 13 C -0.52 -15.52 9.99 -34.44 -0.34 -15.86 16 14 H 0.08 2.70 8.06 -52.49 -0.42 2.27 16 15 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -27.60 13.96 55.43 0.77 -26.83 16 17 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 21 C -0.18 -2.21 8.96 -39.39 -0.35 -2.56 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 24 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 25 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 26 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.41 6.78 7.96 -40.82 -0.33 6.45 16 28 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 29 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.00 0.11 7.20 -51.93 -0.37 -0.27 16 33 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 16 34 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.13 1.38 6.74 -52.49 -0.35 1.02 16 LS Contribution 303.35 15.07 4.57 4.57 Total: -1.00 -32.23 303.35 -7.09 -39.32 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.81 Total: 1.32 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -2.30 Total: -12.41 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.44 Total: -38.24 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.36 Total: -8.88 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.23 -7.09 -39.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385810866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.225 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds