Wall clock time and date at job start Mon Mar 30 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38276 * 119.94342 * 2 1 4 4 C 1.38285 * 120.16252 * 180.27632 * 3 2 1 5 5 C 1.38279 * 120.04729 * 359.44563 * 4 3 2 6 6 F 1.35100 * 120.05941 * 180.25068 * 5 4 3 7 7 C 1.39078 * 119.89076 * 0.27913 * 5 4 3 8 8 N 1.39844 * 120.08616 * 180.02562 * 7 5 4 9 9 C 1.46502 * 120.00073 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46548 * 179.97438 * 9 8 7 11 11 O 1.42891 * 109.47290 * 65.00341 * 10 9 8 12 12 C 1.42898 * 114.00179 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47507 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99703 * 359.97438 * 13 12 11 15 15 C 1.37886 * 120.00080 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99657 * 179.97438 * 15 13 12 17 17 Si 1.86790 * 120.00054 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47349 * 89.99658 * 17 15 13 19 19 H 1.48504 * 109.47241 * 210.00004 * 17 15 13 20 20 H 1.48502 * 109.47377 * 330.00186 * 17 15 13 21 21 C 1.38150 * 119.94608 * 179.72296 * 2 1 3 22 22 H 1.09006 * 109.46762 * 270.27609 * 1 2 3 23 23 H 1.08999 * 109.47112 * 30.27459 * 1 2 3 24 24 H 1.08997 * 109.46928 * 150.27749 * 1 2 3 25 25 H 1.08005 * 119.92105 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.98019 * 179.72693 * 4 3 2 27 27 H 0.97005 * 119.99436 * 359.97438 * 8 7 5 28 28 H 1.08990 * 109.47086 * 299.99581 * 9 8 7 29 29 H 1.08997 * 109.47245 * 60.00281 * 9 8 7 30 30 H 1.09001 * 109.46805 * 185.00242 * 10 9 8 31 31 H 1.08998 * 109.47095 * 304.99346 * 10 9 8 32 32 H 1.09000 * 109.47268 * 299.99806 * 12 11 10 33 33 H 1.09003 * 109.47547 * 59.99489 * 12 11 10 34 34 H 0.97002 * 120.00048 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.02320 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5801 1.2035 -0.0058 5 6 4.2771 0.0092 0.0000 6 9 5.6281 0.0141 -0.0005 7 6 3.5850 -1.1971 0.0058 8 7 4.2858 -2.4073 0.0122 9 6 3.5549 -3.6770 0.0188 10 6 4.5508 -4.8386 0.0244 11 8 5.2934 -4.8235 1.2451 12 6 6.2564 -5.8738 1.3525 13 6 6.9774 -5.7613 2.6711 14 1 6.7256 -4.9670 3.3581 15 6 7.9584 -6.6726 3.0003 16 7 8.5878 -6.5741 4.1508 17 14 8.3942 -8.0460 1.8117 18 1 9.4734 -7.5880 0.9002 19 1 8.8607 -9.2316 2.5748 20 1 7.1951 -8.4105 1.0151 21 6 2.1967 -1.1970 0.0058 22 1 -0.3633 0.0050 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3633 -0.8924 -0.5095 25 1 1.6550 2.1323 0.0004 26 1 4.1162 2.1410 -0.0102 27 1 5.2558 -2.4060 0.0123 28 1 2.9284 -3.7309 0.9090 29 1 2.9284 -3.7403 -0.8709 30 1 4.0100 -5.7812 -0.0603 31 1 5.2344 -4.7350 -0.8183 32 1 5.7507 -6.8377 1.2957 33 1 6.9756 -5.7922 0.5375 34 1 9.2777 -7.2154 4.3827 35 1 1.6562 -2.1321 0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385810866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:39 Heat of formation + Delta-G solvation = -96.086358 kcal Electronic energy + Delta-G solvation = -17810.732829 eV Core-core repulsion = 14721.939846 eV Total energy + Delta-G solvation = -3088.792983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -49.73747 -40.33241 -38.92612 -36.69186 -34.88860 -33.16833 -31.87254 -30.07009 -28.66990 -27.27258 -24.44820 -23.97764 -22.39846 -22.22524 -19.16276 -18.68465 -17.86776 -17.60890 -17.37530 -16.61288 -16.43949 -16.35165 -15.59939 -15.11582 -14.98697 -14.93925 -14.58763 -14.31738 -14.25051 -14.06808 -13.46333 -13.07234 -12.76619 -12.64711 -12.64447 -12.52329 -12.21071 -11.92529 -11.85544 -11.43370 -11.01397 -10.96480 -10.44573 -9.57118 -8.40860 -8.36503 -6.49824 0.28042 0.55077 1.31147 1.34660 1.45360 2.26486 2.36384 2.75217 2.91838 2.98167 3.42108 3.83446 3.96192 4.00735 4.19579 4.36393 4.40483 4.46941 4.53428 4.59226 4.63762 4.81491 4.91565 4.93769 4.96889 5.01404 5.16650 5.31697 5.39021 5.42577 5.68715 5.86326 5.91517 6.29955 6.54519 6.59259 6.67786 7.14710 8.76615 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.033744 B = 0.004011 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.577219 B = 6978.322025 C = 7364.242765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.046 4.046 3 C -0.159 4.159 4 C -0.104 4.104 5 C -0.030 4.030 6 F -0.162 7.162 7 C 0.181 3.819 8 N -0.746 5.746 9 C 0.136 3.864 10 C 0.037 3.963 11 O -0.407 6.407 12 C 0.180 3.820 13 C -0.550 4.550 14 H 0.025 0.975 15 C 0.011 3.989 16 N -0.943 5.943 17 Si 0.960 3.040 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.241 1.241 21 C -0.188 4.188 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.155 0.845 26 H 0.147 0.853 27 H 0.398 0.602 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.012 0.988 34 H 0.274 0.726 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.041 11.122 -14.083 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.047 4.047 3 C -0.179 4.179 4 C -0.123 4.123 5 C -0.054 4.054 6 F -0.142 7.142 7 C 0.076 3.924 8 N -0.374 5.374 9 C 0.012 3.988 10 C -0.040 4.040 11 O -0.327 6.327 12 C 0.104 3.896 13 C -0.588 4.588 14 H 0.044 0.956 15 C -0.187 4.187 16 N -0.582 5.582 17 Si 0.780 3.220 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.164 1.164 21 C -0.211 4.211 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.173 0.827 26 H 0.164 0.836 27 H 0.232 0.768 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.029 0.971 34 H 0.083 0.917 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.019 10.975 -13.821 24.517 hybrid contribution 1.638 -0.701 0.087 1.783 sum -15.381 10.274 -13.734 23.038 Atomic orbital electron populations 1.20862 0.88472 1.04124 1.03351 1.20128 0.97772 0.91855 0.94961 1.20978 0.92290 0.99012 1.05617 1.21169 0.95715 0.96005 0.99436 1.17642 0.76461 0.94575 1.16675 1.91396 1.30141 1.97373 1.95261 1.18170 0.92927 0.84986 0.96330 1.44783 1.08599 1.02776 1.81259 1.21496 0.93817 0.80727 1.02716 1.22919 0.94629 0.99050 0.87423 1.87912 1.53286 1.52762 1.38767 1.20326 0.87241 0.86762 0.95226 1.21179 1.20469 1.14127 1.03005 0.95640 1.25902 0.94712 1.00537 0.97506 1.70040 1.25519 1.38433 1.24228 0.85552 0.80054 0.77671 0.78692 1.18555 1.19796 1.16439 1.20673 0.90062 1.00041 1.10323 0.90168 0.89671 0.90589 0.82688 0.83550 0.76784 0.91790 0.87603 0.90146 0.92556 0.96410 0.97072 0.91737 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.57 16 2 C -0.05 -0.87 5.88 -19.87 -0.12 -0.98 16 3 C -0.16 -2.95 9.69 22.29 0.22 -2.73 16 4 C -0.10 -2.41 10.02 22.29 0.22 -2.18 16 5 C -0.03 -0.89 7.31 22.48 0.16 -0.73 16 6 F -0.16 -5.55 16.64 44.97 0.75 -4.80 16 7 C 0.18 5.23 6.66 38.21 0.25 5.48 16 8 N -0.75 -22.92 5.68 -339.19 -1.93 -24.84 16 9 C 0.14 3.55 5.30 86.38 0.46 4.00 16 10 C 0.04 1.14 6.07 71.98 0.44 1.57 16 11 O -0.41 -18.51 10.27 -148.98 -1.53 -20.04 16 12 C 0.18 8.93 4.76 71.23 0.34 9.27 16 13 C -0.55 -33.89 9.99 25.60 0.26 -33.64 16 14 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 15 C 0.01 0.68 5.47 84.66 0.46 1.14 16 16 N -0.94 -60.05 13.96 21.45 0.30 -59.75 16 17 Si 0.96 43.23 27.47 68.60 1.88 45.11 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 21 C -0.19 -4.31 8.96 22.39 0.20 -4.11 16 22 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 23 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 24 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 25 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 26 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.40 13.79 7.96 -92.70 -0.74 13.05 16 28 H 0.06 1.73 7.95 -2.39 -0.02 1.71 16 29 H 0.11 1.98 7.95 -2.39 -0.02 1.96 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 32 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 33 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 34 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 35 H 0.14 2.74 6.74 -2.91 -0.02 2.72 16 Total: -1.00 -73.71 303.35 3.38 -70.34 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.30 Total: 17.46 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 3.61 Total: -23.47 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.63 Total: -84.59 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.53 Total: -20.04 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.75 Total: -4.80 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Total: -73.71 3.38 -70.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385810866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.750 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds