Wall clock time and date at job start Mon Mar 30 2020 06:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38142 * 120.01444 * 2 1 4 4 C 1.38222 * 120.10005 * 180.27397 * 3 2 1 5 5 C 1.38537 * 120.12451 * 359.72980 * 4 3 2 6 6 F 1.35098 * 119.99061 * 179.97438 * 5 4 3 7 7 C 1.38300 * 120.02289 * 359.97438 * 5 4 3 8 8 C 1.38886 * 119.90263 * 0.02562 * 7 5 4 9 9 N 1.39675 * 120.06475 * 180.02562 * 8 7 5 10 10 C 1.46507 * 119.99622 * 0.02562 * 9 8 7 11 11 C 1.52994 * 109.46700 * 179.97438 * 10 9 8 12 12 O 1.42899 * 109.47287 * 65.00227 * 11 10 9 13 13 C 1.42906 * 114.00467 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47202 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00354 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99817 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99639 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99951 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47221 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47070 * 119.99896 * 18 16 14 21 21 H 1.48497 * 109.46742 * 239.99822 * 18 16 14 22 22 H 1.08996 * 109.47238 * 270.27004 * 1 2 3 23 23 H 1.09001 * 109.47282 * 30.27185 * 1 2 3 24 24 H 1.09000 * 109.47256 * 150.27399 * 1 2 3 25 25 H 1.07996 * 119.94538 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.93542 * 179.70282 * 4 3 2 27 27 H 1.07999 * 120.05034 * 180.02562 * 7 5 4 28 28 H 0.96995 * 120.00164 * 179.72610 * 9 8 7 29 29 H 1.09000 * 109.46860 * 299.99623 * 10 9 8 30 30 H 1.08999 * 109.46739 * 59.99856 * 10 9 8 31 31 H 1.09003 * 109.46719 * 184.99523 * 11 10 9 32 32 H 1.08992 * 109.47409 * 304.99974 * 11 10 9 33 33 H 1.09005 * 109.46607 * 300.00272 * 13 12 11 34 34 H 1.09001 * 109.46734 * 59.99252 * 13 12 11 35 35 H 0.97003 * 119.99406 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1962 0.0000 4 6 3.5802 1.1982 -0.0057 5 6 4.2773 0.0010 -0.0058 6 9 5.6282 0.0062 -0.0119 7 6 3.5907 -1.1995 0.0003 8 6 2.2019 -1.2028 0.0061 9 7 1.5050 -2.4133 0.0129 10 6 2.2392 -3.6811 0.0145 11 6 1.2465 -4.8452 0.0229 12 8 0.4991 -4.8427 -1.1951 13 6 -0.4616 -5.8964 -1.2899 14 6 -1.1877 -5.7972 -2.6066 15 1 -0.9407 -5.0082 -3.3014 16 6 -2.1683 -6.7132 -2.9238 17 7 -2.4695 -7.6737 -2.0774 18 14 -3.0690 -6.5898 -4.5556 19 1 -2.5473 -5.4301 -5.3226 20 1 -2.8539 -7.8353 -5.3352 21 1 -4.5214 -6.4063 -4.3066 22 1 -0.3633 0.0048 1.0276 23 1 -0.3634 0.8875 -0.5180 24 1 -0.3634 -0.8924 -0.5096 25 1 1.6574 2.1311 0.0004 26 1 4.1177 2.1350 -0.0106 27 1 4.1337 -2.1331 0.0007 28 1 0.5351 -2.4145 0.0209 29 1 2.8625 -3.7410 -0.8777 30 1 2.8693 -3.7349 0.9023 31 1 1.7901 -5.7856 0.1135 32 1 0.5657 -4.7361 0.8670 33 1 0.0470 -6.8584 -1.2265 34 1 -1.1778 -5.8095 -0.4728 35 1 -3.1591 -8.3183 -2.3007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385817371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:46 Heat of formation + Delta-G solvation = -79.124144 kcal Electronic energy + Delta-G solvation = -17788.606325 eV Core-core repulsion = 14700.548879 eV Total energy + Delta-G solvation = -3088.057446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.83982 -39.57247 -37.19809 -35.17141 -32.81795 -32.40504 -30.54224 -28.22365 -26.89055 -26.23877 -23.24828 -22.39733 -21.46166 -21.11260 -18.02065 -16.79585 -16.38599 -15.87976 -15.60242 -15.53040 -15.29635 -14.98481 -14.56647 -14.07773 -13.91168 -13.77800 -13.26113 -13.11971 -12.93133 -12.12827 -11.96330 -11.76848 -11.54718 -11.49351 -11.08679 -10.88507 -10.87543 -10.73479 -10.11955 -10.01160 -9.19434 -8.97030 -8.64475 -8.30552 -7.35769 -6.18977 -4.21173 1.23484 1.50794 3.24303 3.31238 3.37447 3.46169 3.69489 4.26755 4.37854 4.67850 4.75650 4.97701 5.06180 5.17932 5.21473 5.27501 5.44974 5.55913 5.64077 5.66756 5.85218 5.88435 5.91657 6.07206 6.07862 6.22374 6.27217 6.47434 6.85147 6.96388 7.30015 7.34677 7.70911 7.80503 8.04407 8.42887 8.91609 9.44270 10.92466 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.003915 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.449928 B = 7149.589661 C = 7529.501198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.175 4.175 3 C -0.046 4.046 4 C -0.220 4.220 5 C 0.139 3.861 6 F -0.144 7.144 7 C -0.238 4.238 8 C 0.253 3.747 9 N -0.727 5.727 10 C 0.125 3.875 11 C 0.049 3.951 12 O -0.394 6.394 13 C 0.195 3.805 14 C -0.517 4.517 15 H 0.067 0.933 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.409 0.591 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.096 14.285 6.686 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.180 4.180 3 C -0.064 4.064 4 C -0.241 4.241 5 C 0.119 3.881 6 F -0.123 7.123 7 C -0.262 4.262 8 C 0.146 3.854 9 N -0.355 5.355 10 C 0.000 4.000 11 C -0.029 4.029 12 O -0.314 6.314 13 C 0.121 3.879 14 C -0.555 4.555 15 H 0.085 0.915 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.146 0.854 26 H 0.145 0.855 27 H 0.150 0.850 28 H 0.247 0.753 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.145 14.030 6.552 17.983 hybrid contribution -0.611 -0.416 -0.577 0.938 sum 8.534 13.614 5.975 17.143 Atomic orbital electron populations 1.20616 0.90837 1.02993 1.02003 1.19447 0.96288 0.91503 1.10717 1.20568 0.92832 0.97081 0.95956 1.20757 0.94790 0.96564 1.12035 1.17353 0.76247 0.94186 1.00329 1.91466 1.29542 1.97484 1.93821 1.20462 0.92996 0.97623 1.15129 1.17381 0.90291 0.86203 0.91540 1.44883 1.09033 1.02077 1.79525 1.21490 0.94681 0.82477 1.01304 1.22470 0.94125 0.96438 0.89865 1.87900 1.53647 1.54484 1.35319 1.20242 0.85687 0.84517 0.97503 1.21073 1.18795 1.13475 1.02125 0.91482 1.24953 0.96752 0.94899 0.97832 1.69970 1.31991 1.15871 1.35848 0.86278 0.79225 0.78189 0.82808 1.19452 1.20777 1.20779 0.91602 0.91433 0.91478 0.85408 0.85549 0.84991 0.75279 0.91319 0.91362 0.92676 0.93785 0.97578 0.97634 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.57 36.00 0.34 -0.82 16 2 C -0.17 -2.15 5.90 -104.41 -0.62 -2.77 16 3 C -0.05 -0.50 9.69 -39.62 -0.38 -0.88 16 4 C -0.22 -2.54 10.02 -39.48 -0.40 -2.94 16 5 C 0.14 1.81 7.30 -39.45 -0.29 1.52 16 6 F -0.14 -1.93 17.27 2.25 0.04 -1.89 16 7 C -0.24 -3.19 9.29 -39.32 -0.37 -3.56 16 8 C 0.25 3.46 6.63 -83.80 -0.56 2.90 16 9 N -0.73 -10.31 5.58 -58.64 -0.33 -10.64 16 10 C 0.12 1.74 5.30 -4.04 -0.02 1.72 16 11 C 0.05 0.82 6.07 37.15 0.23 1.05 16 12 O -0.39 -8.90 10.27 -35.23 -0.36 -9.26 16 13 C 0.19 5.13 5.69 36.00 0.20 5.33 16 14 C -0.52 -14.84 9.43 -34.44 -0.32 -15.16 16 15 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 16 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16 17 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 18 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 24 H 0.07 0.80 6.55 -51.93 -0.34 0.46 16 25 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 26 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 27 H 0.13 1.66 6.73 -52.49 -0.35 1.30 16 28 H 0.41 5.95 6.47 -40.82 -0.26 5.69 16 29 H 0.07 0.99 7.95 -51.93 -0.41 0.58 16 30 H 0.07 0.79 7.95 -51.93 -0.41 0.37 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 LS Contribution 304.30 15.07 4.59 4.59 Total: -1.00 -30.38 304.30 -7.33 -37.71 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.71 Total: 0.71 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -2.27 Total: -12.08 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.41 Total: -36.22 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.36 Total: -9.26 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.38 -7.33 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385817371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.412 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds