Wall clock time and date at job start Mon Mar 30 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38142 * 120.01444 * 2 1 4 4 C 1.38222 * 120.10005 * 180.27397 * 3 2 1 5 5 C 1.38537 * 120.12451 * 359.72980 * 4 3 2 6 6 F 1.35098 * 119.99061 * 179.97438 * 5 4 3 7 7 C 1.38300 * 120.02289 * 359.97438 * 5 4 3 8 8 C 1.38886 * 119.90263 * 0.02562 * 7 5 4 9 9 N 1.39675 * 120.06475 * 180.02562 * 8 7 5 10 10 C 1.46507 * 119.99622 * 0.02562 * 9 8 7 11 11 C 1.52994 * 109.46700 * 179.97438 * 10 9 8 12 12 O 1.42899 * 109.47287 * 65.00227 * 11 10 9 13 13 C 1.42906 * 114.00467 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47202 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00354 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99817 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99639 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99951 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47221 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47070 * 119.99896 * 18 16 14 21 21 H 1.48497 * 109.46742 * 239.99822 * 18 16 14 22 22 H 1.08996 * 109.47238 * 270.27004 * 1 2 3 23 23 H 1.09001 * 109.47282 * 30.27185 * 1 2 3 24 24 H 1.09000 * 109.47256 * 150.27399 * 1 2 3 25 25 H 1.07996 * 119.94538 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.93542 * 179.70282 * 4 3 2 27 27 H 1.07999 * 120.05034 * 180.02562 * 7 5 4 28 28 H 0.96995 * 120.00164 * 179.72610 * 9 8 7 29 29 H 1.09000 * 109.46860 * 299.99623 * 10 9 8 30 30 H 1.08999 * 109.46739 * 59.99856 * 10 9 8 31 31 H 1.09003 * 109.46719 * 184.99523 * 11 10 9 32 32 H 1.08992 * 109.47409 * 304.99974 * 11 10 9 33 33 H 1.09005 * 109.46607 * 300.00272 * 13 12 11 34 34 H 1.09001 * 109.46734 * 59.99252 * 13 12 11 35 35 H 0.97003 * 119.99406 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1962 0.0000 4 6 3.5802 1.1982 -0.0057 5 6 4.2773 0.0010 -0.0058 6 9 5.6282 0.0062 -0.0119 7 6 3.5907 -1.1995 0.0003 8 6 2.2019 -1.2028 0.0061 9 7 1.5050 -2.4133 0.0129 10 6 2.2392 -3.6811 0.0145 11 6 1.2465 -4.8452 0.0229 12 8 0.4991 -4.8427 -1.1951 13 6 -0.4616 -5.8964 -1.2899 14 6 -1.1877 -5.7972 -2.6066 15 1 -0.9407 -5.0082 -3.3014 16 6 -2.1683 -6.7132 -2.9238 17 7 -2.4695 -7.6737 -2.0774 18 14 -3.0690 -6.5898 -4.5556 19 1 -2.5473 -5.4301 -5.3226 20 1 -2.8539 -7.8353 -5.3352 21 1 -4.5214 -6.4063 -4.3066 22 1 -0.3633 0.0048 1.0276 23 1 -0.3634 0.8875 -0.5180 24 1 -0.3634 -0.8924 -0.5096 25 1 1.6574 2.1311 0.0004 26 1 4.1177 2.1350 -0.0106 27 1 4.1337 -2.1331 0.0007 28 1 0.5351 -2.4145 0.0209 29 1 2.8625 -3.7410 -0.8777 30 1 2.8693 -3.7349 0.9023 31 1 1.7901 -5.7856 0.1135 32 1 0.5657 -4.7361 0.8670 33 1 0.0470 -6.8584 -1.2265 34 1 -1.1778 -5.8095 -0.4728 35 1 -3.1591 -8.3183 -2.3007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385817371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:44 Heat of formation + Delta-G solvation = -97.325855 kcal Electronic energy + Delta-G solvation = -17789.395610 eV Core-core repulsion = 14700.548879 eV Total energy + Delta-G solvation = -3088.846732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.84247 -40.55379 -38.80069 -36.40025 -34.89256 -33.35871 -31.74643 -29.67464 -28.56239 -27.20134 -24.68087 -24.21675 -22.47427 -22.16113 -19.07553 -18.63122 -17.73693 -17.52922 -16.79694 -16.56617 -16.41929 -16.36634 -16.09038 -15.47431 -15.10022 -14.96805 -14.53506 -14.22824 -14.07391 -13.69982 -13.27111 -12.99798 -12.94654 -12.72610 -12.59570 -12.49586 -12.34065 -12.01577 -11.92112 -11.31443 -11.01048 -10.91029 -10.29188 -9.59666 -8.37322 -8.34507 -6.46683 0.27776 0.55997 1.39543 1.40093 1.54806 2.32280 2.40076 2.74686 2.99780 3.09589 3.41126 3.85963 3.98993 4.06830 4.17450 4.19270 4.37034 4.51198 4.59827 4.64543 4.75399 4.78941 4.84884 4.89024 5.03808 5.13052 5.15519 5.34010 5.34719 5.52565 5.55687 5.90997 5.93279 6.31248 6.48977 6.71191 6.78184 7.25413 8.77575 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.003915 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.449928 B = 7149.589661 C = 7529.501198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.182 4.182 3 C -0.042 4.042 4 C -0.216 4.216 5 C 0.121 3.879 6 F -0.150 7.150 7 C -0.249 4.249 8 C 0.234 3.766 9 N -0.736 5.736 10 C 0.134 3.866 11 C 0.043 3.957 12 O -0.407 6.407 13 C 0.209 3.791 14 C -0.548 4.548 15 H 0.060 0.940 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.271 1.271 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.049 0.951 25 H 0.160 0.840 26 H 0.149 0.851 27 H 0.133 0.867 28 H 0.406 0.594 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.052 0.948 33 H -0.012 1.012 34 H -0.010 1.010 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.873 15.788 6.315 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.186 4.186 3 C -0.061 4.061 4 C -0.237 4.237 5 C 0.101 3.899 6 F -0.128 7.128 7 C -0.273 4.273 8 C 0.128 3.872 9 N -0.365 5.365 10 C 0.010 3.990 11 C -0.035 4.035 12 O -0.327 6.327 13 C 0.134 3.866 14 C -0.586 4.586 15 H 0.078 0.922 16 C -0.190 4.190 17 N -0.568 5.568 18 Si 0.804 3.196 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.196 1.196 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.068 0.932 25 H 0.177 0.823 26 H 0.166 0.834 27 H 0.151 0.849 28 H 0.243 0.757 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.006 0.994 34 H 0.008 0.992 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.951 15.551 6.198 18.983 hybrid contribution -0.477 -0.823 -0.385 1.026 sum 8.474 14.728 5.813 17.959 Atomic orbital electron populations 1.20634 0.89932 1.02985 1.02709 1.19758 0.97150 0.91580 1.10155 1.20929 0.92730 0.97823 0.94578 1.21086 0.95224 0.96856 1.10493 1.17572 0.76197 0.94791 1.01330 1.91450 1.29879 1.97530 1.93970 1.20563 0.93119 0.98084 1.15518 1.17565 0.90499 0.86450 0.92676 1.44868 1.08834 1.02340 1.80442 1.21423 0.93761 0.81452 1.02331 1.22770 0.94374 0.98442 0.87872 1.87851 1.53394 1.53076 1.38359 1.19843 0.85836 0.84690 0.96236 1.21397 1.20083 1.13953 1.03141 0.92221 1.25909 0.97224 0.94117 1.01735 1.70065 1.32504 1.16439 1.37816 0.85172 0.78075 0.78502 0.77890 1.19004 1.19761 1.19571 0.90541 0.89662 0.93189 0.82254 0.83367 0.84865 0.75745 0.92051 0.88465 0.91644 0.92986 0.99421 0.99211 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.57 71.24 0.68 -1.44 16 2 C -0.18 -4.20 5.90 -19.73 -0.12 -4.31 16 3 C -0.04 -0.81 9.69 22.24 0.22 -0.59 16 4 C -0.22 -4.48 10.02 22.34 0.22 -4.26 16 5 C 0.12 3.02 7.30 22.36 0.16 3.19 16 6 F -0.15 -3.86 17.27 44.97 0.78 -3.09 16 7 C -0.25 -6.52 9.29 22.44 0.21 -6.32 16 8 C 0.23 6.23 6.63 38.21 0.25 6.49 16 9 N -0.74 -20.72 5.58 -339.43 -1.89 -22.62 16 10 C 0.13 3.69 5.30 86.38 0.46 4.14 16 11 C 0.04 1.43 6.07 71.98 0.44 1.87 16 12 O -0.41 -18.76 10.27 -148.98 -1.53 -20.29 16 13 C 0.21 11.32 5.69 71.23 0.41 11.73 16 14 C -0.55 -32.00 9.43 25.60 0.24 -31.76 16 15 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 16 C 0.01 0.50 5.46 84.66 0.46 0.97 16 17 N -0.93 -54.76 13.29 21.45 0.28 -54.48 16 18 Si 0.98 43.72 29.54 68.60 2.03 45.75 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 24 H 0.05 1.18 6.55 -2.39 -0.02 1.16 16 25 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 26 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 27 H 0.13 3.31 6.73 -2.91 -0.02 3.29 16 28 H 0.41 11.89 6.47 -92.71 -0.60 11.29 16 29 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 30 H 0.10 2.11 7.95 -2.39 -0.02 2.09 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 34 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -64.94 304.30 3.79 -61.15 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.49 Total: 13.87 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 3.63 Total: -20.30 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -1.61 Total: -77.10 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -1.53 Total: -20.29 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -64.94 3.79 -61.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385817371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.173 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds