Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00104 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99726 * 3 2 1 5 5 H 1.48501 * 109.47501 * 30.00071 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00090 * 3 2 1 7 7 C 1.37885 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99966 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47036 * 179.97438 * 12 11 10 14 14 C 1.36062 * 116.99829 * 179.97438 * 13 12 11 15 15 C 1.38628 * 119.98884 * 359.72845 * 14 13 12 16 16 C 1.38140 * 120.04298 * 179.75919 * 15 14 13 17 17 C 1.38871 * 120.01807 * 0.51347 * 16 15 14 18 18 N 1.39931 * 120.01327 * 179.71603 * 17 16 15 19 19 C 1.38838 * 119.97657 * 359.74463 * 17 16 15 20 20 C 1.38292 * 119.95770 * 359.97438 * 19 17 16 21 21 F 1.35098 * 120.01105 * 179.97438 * 20 19 17 22 22 H 0.96996 * 119.99717 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00495 * 9 7 2 24 24 H 1.08992 * 109.47413 * 300.00826 * 9 7 2 25 25 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 26 26 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 28 28 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 29 29 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 30 30 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 31 31 H 1.07999 * 119.97468 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.99374 * 180.23295 * 16 15 14 33 33 H 0.96991 * 120.00259 * 180.02562 * 18 17 16 34 34 H 0.97004 * 119.99647 * 0.02824 * 18 17 16 35 35 H 1.08006 * 120.02450 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0793 -0.0004 13 8 7.4904 -4.0793 -0.0009 14 6 8.1081 -5.2917 -0.0009 15 6 7.3528 -6.4541 0.0053 16 6 7.9787 -7.6856 0.0003 17 6 9.3654 -7.7601 -0.0002 18 7 9.9993 -9.0076 0.0008 19 6 10.1226 -6.5964 -0.0010 20 6 9.4950 -5.3641 -0.0019 21 9 10.2308 -4.2311 -0.0022 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6799 0.8895 24 1 3.8746 -0.6809 -0.8904 25 1 3.6578 -3.1507 -0.8897 26 1 3.6584 -3.1504 0.8903 27 1 5.9147 -2.1229 0.8901 28 1 5.9148 -2.1230 -0.8898 29 1 5.6980 -4.5934 0.8894 30 1 5.6981 -4.5928 -0.8906 31 1 6.2743 -6.3969 0.0097 32 1 7.3894 -8.5907 0.0014 33 1 10.9678 -9.0595 0.0008 34 1 9.4700 -9.8205 0.0014 35 1 11.2012 -6.6535 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385830381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = -77.878806 kcal Electronic energy + Delta-G solvation = -17456.570843 eV Core-core repulsion = 14368.567399 eV Total energy + Delta-G solvation = -3088.003444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -48.83051 -40.05523 -38.10247 -35.02239 -33.90192 -32.35226 -30.85782 -29.60637 -27.86418 -25.30291 -23.29083 -22.23873 -21.27440 -20.14244 -18.32125 -17.64542 -17.45737 -16.62662 -16.32686 -15.69108 -15.40317 -15.35212 -14.82266 -14.31446 -14.02797 -13.92929 -13.07229 -12.89982 -12.62797 -12.62167 -12.09358 -11.97527 -11.83973 -11.28931 -11.08251 -10.71942 -10.60623 -9.95916 -9.89794 -9.72126 -9.61431 -9.17288 -9.07167 -8.52241 -7.48099 -6.03178 -4.01214 0.94110 1.30402 3.17678 3.33179 3.40480 3.45172 3.46801 3.48245 4.21112 4.47289 4.53741 4.79428 4.95736 5.15453 5.22436 5.30062 5.31366 5.49409 5.53879 5.80966 5.86255 5.91891 5.93437 6.07492 6.28661 6.40756 6.57288 6.67952 6.88708 7.06346 7.30770 7.40348 7.43272 7.44043 7.80753 8.54790 9.01450 9.59591 11.10280 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.046689 B = 0.003272 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.572293 B = 8556.538910 C = 9125.059598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.099 4.099 11 C -0.120 4.120 12 C 0.060 3.940 13 O -0.312 6.312 14 C 0.050 3.950 15 C -0.133 4.133 16 C -0.166 4.166 17 C 0.202 3.798 18 N -0.878 5.878 19 C -0.199 4.199 20 C 0.113 3.887 21 F -0.132 7.132 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.012 0.988 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.398 0.602 34 H 0.399 0.601 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.611 -17.765 0.030 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.158 4.158 12 C -0.014 4.014 13 O -0.226 6.226 14 C 0.003 3.997 15 C -0.152 4.152 16 C -0.189 4.189 17 C 0.098 3.902 18 N -0.419 5.419 19 C -0.223 4.223 20 C 0.092 3.908 21 F -0.110 7.110 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.226 0.774 34 H 0.228 0.772 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 20.525 -17.346 0.033 26.873 hybrid contribution 0.441 0.576 -0.024 0.726 sum 20.966 -16.770 0.008 26.848 Atomic orbital electron populations 1.69920 1.06318 1.26890 1.51260 1.25045 0.94748 0.99246 0.94553 0.86763 0.80399 0.83516 0.78542 1.20284 1.21416 1.18918 1.21155 0.89534 0.94459 1.50767 0.91056 1.19566 0.97059 0.92063 0.96443 1.21399 0.90488 1.00422 1.01341 1.21717 0.97768 0.93053 1.03221 1.23043 0.76882 1.00393 1.01117 1.86160 1.22331 1.25148 1.88957 1.18811 0.90613 0.86177 1.04117 1.20995 1.00477 0.90897 1.02858 1.20447 0.92223 0.97899 1.08334 1.17326 0.91371 0.85701 0.95763 1.42372 1.09184 1.04346 1.86020 1.20257 1.00230 0.89436 1.12363 1.16643 0.85974 0.82324 1.05841 1.91498 1.76596 1.48962 1.93954 0.92756 0.96480 0.96925 0.92536 0.92515 0.91284 0.91297 0.92072 0.92076 0.84185 0.85323 0.77422 0.77235 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 2 C 0.07 1.92 5.47 -17.81 -0.10 1.82 16 3 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 10 C -0.10 -1.91 5.15 -26.73 -0.14 -2.05 16 11 C -0.12 -1.97 5.58 -26.73 -0.15 -2.12 16 12 C 0.06 0.85 4.74 37.16 0.18 1.03 16 13 O -0.31 -4.83 10.00 -19.94 -0.20 -5.03 16 14 C 0.05 0.69 6.69 -39.20 -0.26 0.42 16 15 C -0.13 -1.47 9.03 -39.47 -0.36 -1.83 16 16 C -0.17 -1.52 9.89 -39.38 -0.39 -1.91 16 17 C 0.20 1.78 6.76 -83.70 -0.57 1.21 16 18 N -0.88 -4.70 9.10 32.44 0.30 -4.40 16 19 C -0.20 -2.01 9.87 -39.34 -0.39 -2.40 16 20 C 0.11 1.47 7.31 -39.32 -0.29 1.18 16 21 F -0.13 -1.91 17.11 2.25 0.04 -1.87 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 24 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.78 7.65 -51.93 -0.40 0.38 16 30 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 31 H 0.14 1.37 6.29 -52.49 -0.33 1.04 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.40 1.47 8.84 -40.82 -0.36 1.11 16 34 H 0.40 1.42 8.84 -40.82 -0.36 1.06 16 35 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -32.66 301.63 -6.86 -39.51 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -4.74 Total: -2.32 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.90 Total: -20.41 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 1.07 Total: -31.79 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.20 Total: -5.03 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.66 -6.86 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385830381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.366 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds