Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00104 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99726 * 3 2 1 5 5 H 1.48501 * 109.47501 * 30.00071 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00090 * 3 2 1 7 7 C 1.37885 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99966 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47036 * 179.97438 * 12 11 10 14 14 C 1.36062 * 116.99829 * 179.97438 * 13 12 11 15 15 C 1.38628 * 119.98884 * 359.72845 * 14 13 12 16 16 C 1.38140 * 120.04298 * 179.75919 * 15 14 13 17 17 C 1.38871 * 120.01807 * 0.51347 * 16 15 14 18 18 N 1.39931 * 120.01327 * 179.71603 * 17 16 15 19 19 C 1.38838 * 119.97657 * 359.74463 * 17 16 15 20 20 C 1.38292 * 119.95770 * 359.97438 * 19 17 16 21 21 F 1.35098 * 120.01105 * 179.97438 * 20 19 17 22 22 H 0.96996 * 119.99717 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00495 * 9 7 2 24 24 H 1.08992 * 109.47413 * 300.00826 * 9 7 2 25 25 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 26 26 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 28 28 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 29 29 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 30 30 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 31 31 H 1.07999 * 119.97468 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.99374 * 180.23295 * 16 15 14 33 33 H 0.96991 * 120.00259 * 180.02562 * 18 17 16 34 34 H 0.97004 * 119.99647 * 0.02824 * 18 17 16 35 35 H 1.08006 * 120.02450 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0793 -0.0004 13 8 7.4904 -4.0793 -0.0009 14 6 8.1081 -5.2917 -0.0009 15 6 7.3528 -6.4541 0.0053 16 6 7.9787 -7.6856 0.0003 17 6 9.3654 -7.7601 -0.0002 18 7 9.9993 -9.0076 0.0008 19 6 10.1226 -6.5964 -0.0010 20 6 9.4950 -5.3641 -0.0019 21 9 10.2308 -4.2311 -0.0022 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6799 0.8895 24 1 3.8746 -0.6809 -0.8904 25 1 3.6578 -3.1507 -0.8897 26 1 3.6584 -3.1504 0.8903 27 1 5.9147 -2.1229 0.8901 28 1 5.9148 -2.1230 -0.8898 29 1 5.6980 -4.5934 0.8894 30 1 5.6981 -4.5928 -0.8906 31 1 6.2743 -6.3969 0.0097 32 1 7.3894 -8.5907 0.0014 33 1 10.9678 -9.0595 0.0008 34 1 9.4700 -9.8205 0.0014 35 1 11.2012 -6.6535 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385830381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = -99.263373 kcal Electronic energy + Delta-G solvation = -17457.498147 eV Core-core repulsion = 14368.567399 eV Total energy + Delta-G solvation = -3088.930749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.82094 -40.94142 -38.98527 -36.58951 -34.81914 -34.24466 -31.69652 -31.17469 -28.79293 -26.83331 -24.41357 -23.22328 -22.50319 -21.78606 -19.28188 -18.83131 -18.38060 -18.26638 -17.40242 -16.50278 -16.46781 -16.32055 -16.04924 -15.71121 -15.44499 -14.98479 -14.71839 -13.96271 -13.87769 -13.73476 -13.46244 -13.41592 -13.04839 -12.74176 -12.54719 -12.01411 -11.92283 -11.74078 -11.49262 -11.38857 -11.29188 -10.75970 -10.73014 -9.88309 -8.29371 -8.21518 -6.33090 0.14480 0.48495 1.36527 1.38083 1.50498 2.20249 2.36704 2.67806 2.88651 3.06191 3.40892 3.75450 3.98347 3.99772 4.15342 4.19846 4.32893 4.45762 4.52478 4.63860 4.76946 4.80307 5.02264 5.06717 5.12537 5.15084 5.17284 5.29673 5.53052 5.61536 5.62029 5.67443 6.28614 6.39647 6.58046 6.75073 7.03438 7.31724 8.87335 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.046689 B = 0.003272 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.572293 B = 8556.538910 C = 9125.059598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.533 4.533 8 H 0.035 0.965 9 C -0.015 4.015 10 C -0.090 4.090 11 C -0.112 4.112 12 C 0.066 3.934 13 O -0.337 6.337 14 C 0.016 3.984 15 C -0.134 4.134 16 C -0.165 4.165 17 C 0.212 3.788 18 N -0.862 5.862 19 C -0.202 4.202 20 C 0.086 3.914 21 F -0.149 7.149 22 H 0.266 0.734 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.408 0.592 34 H 0.411 0.589 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.559 -19.107 0.013 29.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.571 4.571 8 H 0.053 0.947 9 C -0.052 4.052 10 C -0.128 4.128 11 C -0.149 4.149 12 C -0.009 4.009 13 O -0.252 6.252 14 C -0.031 4.031 15 C -0.153 4.153 16 C -0.187 4.187 17 C 0.105 3.895 18 N -0.403 5.403 19 C -0.226 4.226 20 C 0.066 3.934 21 F -0.128 7.128 22 H 0.075 0.925 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.238 0.762 34 H 0.242 0.758 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 22.508 -18.747 0.016 29.292 hybrid contribution -0.166 0.790 -0.020 0.808 sum 22.341 -17.957 -0.004 28.663 Atomic orbital electron populations 1.70068 1.08248 1.28143 1.52808 1.26029 0.95636 1.03554 0.94203 0.85656 0.79476 0.78309 0.79211 1.19178 1.20933 1.17152 1.21534 0.92158 0.93203 1.50167 0.94655 1.19550 0.93846 0.95253 0.96565 1.21221 0.92617 0.97431 1.01522 1.21512 0.95408 0.94963 1.03047 1.22896 0.76898 0.98735 1.02339 1.86074 1.22550 1.26765 1.89784 1.19071 0.91009 0.86222 1.06775 1.21176 1.00948 0.90816 1.02382 1.20784 0.92692 0.98219 1.07023 1.17435 0.91440 0.86482 0.94115 1.42380 1.10030 1.03568 1.84350 1.20455 1.01310 0.88805 1.11995 1.17047 0.86087 0.82797 1.07471 1.91442 1.76943 1.50059 1.94322 0.92505 0.96269 0.96384 0.92391 0.92416 0.91518 0.91455 0.90869 0.90863 0.83210 0.82501 0.76176 0.75806 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 2 C 0.00 0.14 5.47 84.66 0.46 0.60 16 3 Si 0.95 45.18 27.47 68.60 1.88 47.07 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 7 C -0.53 -31.11 9.66 25.60 0.25 -30.87 16 8 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 9 C -0.01 -0.70 4.04 29.85 0.12 -0.58 16 10 C -0.09 -3.43 5.15 30.59 0.16 -3.27 16 11 C -0.11 -3.56 5.58 30.60 0.17 -3.38 16 12 C 0.07 1.79 4.74 71.98 0.34 2.13 16 13 O -0.34 -10.38 10.00 -94.25 -0.94 -11.32 16 14 C 0.02 0.43 6.69 22.52 0.15 0.58 16 15 C -0.13 -2.74 9.03 22.34 0.20 -2.54 16 16 C -0.16 -2.54 9.89 22.40 0.22 -2.32 16 17 C 0.21 3.11 6.76 38.14 0.26 3.37 16 18 N -0.86 -6.10 9.10 -51.28 -0.47 -6.56 16 19 C -0.20 -3.74 9.87 22.43 0.22 -3.52 16 20 C 0.09 2.23 7.31 22.44 0.16 2.39 16 21 F -0.15 -4.41 17.11 44.97 0.77 -3.64 16 22 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 23 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 24 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.07 1.77 7.65 -2.39 -0.02 1.76 16 30 H 0.07 1.78 7.67 -2.39 -0.02 1.76 16 31 H 0.15 2.65 6.29 -2.91 -0.02 2.63 16 32 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.41 1.55 8.84 -92.72 -0.82 0.73 16 34 H 0.41 1.29 8.84 -92.71 -0.82 0.47 16 35 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -71.69 301.63 3.68 -68.01 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -0.58 Total: 4.01 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 2.72 Total: -37.40 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -0.17 Total: -66.73 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.94 Total: -11.32 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.07 kcal Total: -71.69 3.68 -68.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385830381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.251 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds