Wall clock time and date at job start Mon Mar 30 2020 06:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38202 * 120.02401 * 2 1 4 4 C 1.38233 * 120.10950 * 179.97438 * 3 2 1 5 5 C 1.38325 * 120.16249 * 0.02562 * 4 3 2 6 6 C 1.38235 * 120.05227 * 359.97438 * 5 4 3 7 7 F 1.35104 * 120.05887 * 179.97438 * 6 5 4 8 8 C 1.38792 * 120.02814 * 180.24574 * 2 1 3 9 9 N 1.39844 * 120.07617 * 0.02562 * 8 2 1 10 10 C 1.46906 * 110.99380 * 240.22731 * 9 8 2 11 11 C 1.53004 * 109.46595 * 180.02562 * 10 9 8 12 12 O 1.42900 * 109.47468 * 65.00135 * 11 10 9 13 13 C 1.42896 * 113.99941 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46837 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99861 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00143 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99907 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46856 * 59.99653 * 18 16 14 20 20 H 1.48501 * 109.46884 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46877 * 299.99440 * 18 16 14 22 22 H 1.09001 * 109.46445 * 90.00316 * 1 2 3 23 23 H 1.09002 * 109.47369 * 210.00033 * 1 2 3 24 24 H 1.08995 * 109.47392 * 330.00024 * 1 2 3 25 25 H 1.07996 * 119.94351 * 359.97438 * 3 2 1 26 26 H 1.07995 * 119.91419 * 180.02562 * 4 3 2 27 27 H 1.08000 * 119.97433 * 179.97438 * 5 4 3 28 28 H 1.00898 * 110.99747 * 116.28025 * 9 8 2 29 29 H 1.08996 * 109.47461 * 300.00356 * 10 9 8 30 30 H 1.09001 * 109.47115 * 60.00746 * 10 9 8 31 31 H 1.09002 * 109.46593 * 185.00243 * 11 10 9 32 32 H 1.09001 * 109.46940 * 304.99820 * 11 10 9 33 33 H 1.09000 * 109.47130 * 300.00009 * 13 12 11 34 34 H 1.08989 * 109.47294 * 60.00099 * 13 12 11 35 35 H 0.96998 * 120.00043 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1966 0.0000 4 6 3.5808 1.1986 0.0005 5 6 4.2776 0.0037 0.0005 6 6 3.5927 -1.1970 0.0005 7 9 4.2732 -2.3642 0.0000 8 6 2.2015 -1.2016 -0.0052 9 7 1.5045 -2.4140 -0.0109 10 6 1.8321 -3.2151 1.1761 11 6 1.0528 -4.5310 1.1342 12 8 1.4923 -5.3097 0.0195 13 6 0.8241 -6.5660 -0.1114 14 6 1.3639 -7.2992 -1.3124 15 1 2.1393 -6.8505 -1.9155 16 6 0.8671 -8.5425 -1.6417 17 7 -0.0775 -9.0888 -0.9075 18 14 1.5356 -9.4511 -3.1307 19 1 2.9924 -9.6812 -2.9571 20 1 0.8414 -10.7567 -3.2667 21 1 1.3049 -8.6377 -4.3515 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6580 2.1315 -0.0004 26 1 4.1180 2.1355 0.0010 27 1 5.3576 0.0089 0.0005 28 1 1.6862 -2.9315 -0.8578 29 1 2.9013 -3.4266 1.1880 30 1 1.5615 -2.6606 2.0747 31 1 1.2267 -5.0858 2.0562 32 1 -0.0118 -4.3197 1.0326 33 1 0.9938 -7.1629 0.7847 34 1 -0.2451 -6.3974 -0.2386 35 1 -0.4273 -9.9633 -1.1394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385842150.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:49 Heat of formation + Delta-G solvation = -93.463609 kcal Electronic energy + Delta-G solvation = -18137.575419 eV Core-core repulsion = 15048.896167 eV Total energy + Delta-G solvation = -3088.679252 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.03465 -40.48484 -38.81086 -36.59203 -34.90173 -33.42643 -31.53086 -29.56646 -28.49622 -27.32802 -24.56652 -23.57485 -22.70229 -22.31868 -18.71388 -18.50423 -17.79334 -17.54908 -17.30267 -17.02297 -16.60040 -16.29912 -15.94279 -15.27817 -15.00444 -14.69340 -14.27765 -14.19752 -13.97318 -13.50208 -13.26169 -13.03428 -12.83880 -12.68814 -12.62456 -12.57257 -12.33805 -12.18342 -11.91399 -11.32553 -10.90506 -10.28197 -9.80091 -9.61697 -9.59522 -8.33863 -6.46579 0.12593 0.23498 1.38264 1.43110 1.51567 2.32959 2.58010 2.96274 2.99866 3.15201 3.23477 3.81046 4.00513 4.07629 4.24669 4.31166 4.35229 4.46074 4.55942 4.68543 4.76466 4.82234 4.88759 4.92837 5.02997 5.15643 5.17019 5.35560 5.41265 5.52033 5.57988 5.78417 5.92740 5.95481 6.34368 6.49721 6.78154 7.25202 8.78311 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.004265 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.874520 B = 6562.923050 C = 6879.460881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.046 4.046 3 C -0.121 4.121 4 C -0.085 4.085 5 C -0.160 4.160 6 C 0.034 3.966 7 F -0.156 7.156 8 C 0.037 3.963 9 N -0.638 5.638 10 C 0.072 3.928 11 C 0.059 3.941 12 O -0.410 6.410 13 C 0.212 3.788 14 C -0.551 4.551 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.930 5.930 18 Si 0.983 3.017 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.265 1.265 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.165 0.835 26 H 0.168 0.832 27 H 0.146 0.854 28 H 0.352 0.648 29 H 0.036 0.964 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.051 0.949 33 H -0.014 1.014 34 H -0.012 1.012 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 22.832 3.164 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.047 4.047 3 C -0.139 4.139 4 C -0.103 4.103 5 C -0.179 4.179 6 C 0.013 3.987 7 F -0.134 7.134 8 C -0.060 4.060 9 N -0.269 5.269 10 C -0.056 4.056 11 C -0.019 4.019 12 O -0.330 6.330 13 C 0.137 3.863 14 C -0.589 4.589 15 H 0.078 0.922 16 C -0.190 4.190 17 N -0.569 5.569 18 Si 0.805 3.195 19 H -0.192 1.192 20 H -0.197 1.197 21 H -0.190 1.190 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.182 0.818 26 H 0.186 0.814 27 H 0.164 0.836 28 H 0.175 0.825 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.003 0.997 34 H 0.006 0.994 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.911 22.910 3.340 23.480 hybrid contribution 1.034 -1.733 -0.494 2.078 sum 4.945 21.177 2.846 21.932 Atomic orbital electron populations 1.20690 0.89057 1.03452 1.02927 1.20061 0.97704 0.90486 0.96497 1.21490 0.94442 0.97978 1.00006 1.21423 0.94316 0.97865 0.96667 1.21365 1.01676 0.90944 1.03958 1.19085 0.91245 0.82157 1.06255 1.91449 1.80247 1.47577 1.94169 1.19020 0.88249 0.93044 1.05671 1.58069 1.58431 1.04281 1.06093 1.22047 0.98134 0.91703 0.93673 1.22539 0.98307 0.91379 0.89628 1.87770 1.64483 1.32212 1.48577 1.19806 0.91034 0.79955 0.95540 1.21348 1.22355 1.03029 1.12127 0.92228 1.25945 0.94907 0.97563 1.00617 1.70058 1.28300 1.17747 1.40752 0.85243 0.78646 0.77409 0.78163 1.19186 1.19750 1.18995 0.90831 0.91734 0.89360 0.81779 0.81420 0.83647 0.82459 0.94578 0.87944 0.93006 0.93040 0.99658 0.99381 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.96 9.76 71.24 0.70 -1.27 16 2 C -0.05 -1.00 5.90 -19.74 -0.12 -1.12 16 3 C -0.12 -1.85 9.70 22.26 0.22 -1.64 16 4 C -0.09 -1.25 10.04 22.29 0.22 -1.03 16 5 C -0.16 -3.32 10.02 22.29 0.22 -3.10 16 6 C 0.03 0.96 6.99 22.48 0.16 1.12 16 7 F -0.16 -5.33 15.10 44.97 0.68 -4.65 16 8 C 0.04 1.03 5.58 38.21 0.21 1.24 16 9 N -0.64 -20.70 5.36 -338.30 -1.81 -22.51 16 10 C 0.07 2.39 5.77 86.30 0.50 2.89 16 11 C 0.06 2.30 6.28 71.98 0.45 2.75 16 12 O -0.41 -20.81 9.85 -148.98 -1.47 -22.28 16 13 C 0.21 12.26 5.69 71.24 0.41 12.67 16 14 C -0.55 -33.72 9.43 25.60 0.24 -33.48 16 15 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 16 C 0.01 0.49 5.46 84.65 0.46 0.96 16 17 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 18 Si 0.98 45.25 29.54 68.60 2.03 47.28 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 1.47 7.46 -2.39 -0.02 1.45 16 24 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 25 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 26 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 27 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.35 13.13 8.32 -89.70 -0.75 12.38 16 29 H 0.04 1.30 6.06 -2.39 -0.01 1.29 16 30 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -69.93 304.13 3.73 -66.20 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.34 Total: 12.43 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.67 Total: -20.00 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -1.53 Total: -78.99 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.47 Total: -22.28 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.68 Total: -4.65 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.93 3.73 -66.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385842150.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.260 kcal (2) G-P(sol) polarization free energy of solvation -69.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds