Wall clock time and date at job start Mon Mar 30 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38143 * 120.02817 * 2 1 4 4 C 1.38435 * 120.04962 * 180.25753 * 3 2 1 5 5 F 1.35104 * 119.95462 * 179.77040 * 4 3 2 6 6 C 1.38485 * 120.10079 * 359.74359 * 4 3 2 7 7 C 1.38101 * 120.05039 * 0.02562 * 6 4 3 8 8 C 1.38854 * 120.02234 * 179.75156 * 2 1 3 9 9 N 1.39825 * 120.05082 * 0.02562 * 8 2 1 10 10 C 1.46498 * 119.99902 * 179.72585 * 9 8 2 11 11 C 1.53006 * 109.46687 * 180.02562 * 10 9 8 12 12 O 1.42895 * 109.47036 * 65.00210 * 11 10 9 13 13 C 1.42901 * 113.99948 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47372 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99889 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00542 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47261 * 90.00206 * 18 16 14 20 20 H 1.48500 * 109.47278 * 210.00457 * 18 16 14 21 21 H 1.48506 * 109.46831 * 329.99852 * 18 16 14 22 22 H 1.09002 * 109.47105 * 270.25204 * 1 2 3 23 23 H 1.09002 * 109.46716 * 30.24477 * 1 2 3 24 24 H 1.08997 * 109.47574 * 150.25243 * 1 2 3 25 25 H 1.08004 * 119.97332 * 359.97438 * 3 2 1 26 26 H 1.08007 * 119.97830 * 179.97438 * 6 4 3 27 27 H 1.07994 * 120.02983 * 179.97438 * 7 6 4 28 28 H 0.97004 * 119.99545 * 359.72803 * 9 8 2 29 29 H 1.08992 * 109.47311 * 60.00269 * 10 9 8 30 30 H 1.08997 * 109.46828 * 299.99913 * 10 9 8 31 31 H 1.09001 * 109.47002 * 184.99687 * 11 10 9 32 32 H 1.08993 * 109.46955 * 305.00124 * 11 10 9 33 33 H 1.08995 * 109.47392 * 299.99575 * 13 12 11 34 34 H 1.09003 * 109.47182 * 59.99587 * 13 12 11 35 35 H 0.96998 * 120.00821 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5826 1.1965 -0.0054 5 9 4.2568 2.3674 -0.0101 6 6 4.2776 -0.0013 -0.0054 7 6 3.5908 -1.1994 -0.0006 8 6 2.2017 -1.2022 0.0052 9 7 1.5042 -2.4140 0.0099 10 6 2.2383 -3.6818 0.0094 11 6 1.2454 -4.8460 0.0144 12 8 0.4991 -4.8408 -1.2041 13 6 -0.4616 -5.8942 -1.3018 14 6 -1.1868 -5.7922 -2.6188 15 1 -0.9387 -5.0022 -3.3122 16 6 -2.1664 -6.7080 -2.9392 17 7 -2.4683 -7.6704 -2.0952 18 14 -3.0649 -6.5820 -4.5721 19 1 -2.3390 -7.3720 -5.5988 20 1 -4.4431 -7.1140 -4.4211 21 1 -3.1270 -5.1596 -4.9944 22 1 -0.3633 0.0045 1.0277 23 1 -0.3633 0.8878 -0.5177 24 1 -0.3634 -0.8922 -0.5099 25 1 1.6583 2.1314 -0.0004 26 1 5.3577 0.0014 -0.0100 27 1 4.1331 -2.1333 -0.0011 28 1 0.5341 -2.4152 0.0135 29 1 2.8683 -3.7372 0.8970 30 1 2.8616 -3.7402 -0.8829 31 1 1.7889 -5.7866 0.1035 32 1 0.5640 -4.7386 0.8583 33 1 0.0468 -6.8564 -1.2402 34 1 -1.1784 -5.8091 -0.4851 35 1 -3.1577 -8.3145 -2.3203 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385851899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:54 Heat of formation + Delta-G solvation = -78.601283 kcal Electronic energy + Delta-G solvation = -17729.127400 eV Core-core repulsion = 14641.092627 eV Total energy + Delta-G solvation = -3088.034773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.65515 -39.58416 -37.18348 -35.05873 -32.88338 -32.69806 -30.27480 -28.05340 -27.01189 -26.39602 -23.22908 -22.39606 -21.32400 -21.19258 -17.54758 -16.94389 -16.60476 -16.37276 -15.86262 -15.43356 -15.06172 -14.63036 -14.34942 -14.15452 -13.90576 -13.29751 -13.17789 -13.11184 -12.93794 -12.61772 -12.02628 -11.81426 -11.75508 -11.45801 -10.94411 -10.88340 -10.84096 -10.71992 -10.12188 -9.83487 -9.21098 -8.96758 -8.90378 -8.30613 -7.21654 -6.18967 -4.21430 1.25191 1.44812 3.25489 3.30914 3.35822 3.52547 3.69177 4.26504 4.43490 4.68191 4.72517 4.81293 5.12476 5.17786 5.20619 5.34615 5.45624 5.51900 5.62231 5.63094 5.80541 5.88569 5.91233 6.07548 6.14578 6.16550 6.27901 6.39171 6.85721 6.96091 7.29907 7.37607 7.70417 7.83180 8.04262 8.42808 8.91027 9.44054 10.92390 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.032917 B = 0.003768 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.431814 B = 7428.804714 C = 7846.407887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.139 4.139 3 C -0.104 4.104 4 C 0.025 3.975 5 F -0.152 7.152 6 C -0.107 4.107 7 C -0.174 4.174 8 C 0.219 3.781 9 N -0.730 5.730 10 C 0.127 3.873 11 C 0.049 3.951 12 O -0.394 6.394 13 C 0.195 3.805 14 C -0.517 4.517 15 H 0.066 0.934 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.908 3.092 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.271 1.271 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.408 0.592 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.721 13.097 6.719 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.143 4.143 3 C -0.124 4.124 4 C 0.004 3.996 5 F -0.131 7.131 6 C -0.126 4.126 7 C -0.197 4.197 8 C 0.113 3.887 9 N -0.360 5.360 10 C 0.002 3.998 11 C -0.029 4.029 12 O -0.314 6.314 13 C 0.121 3.879 14 C -0.555 4.555 15 H 0.085 0.915 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.735 3.265 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.245 0.755 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.741 12.895 6.590 17.453 hybrid contribution -0.748 -0.176 -0.595 0.972 sum 8.994 12.718 5.995 16.691 Atomic orbital electron populations 1.20650 0.90590 1.03178 1.02229 1.19202 0.96186 0.90838 1.08114 1.20708 0.92105 0.98317 1.01229 1.17361 0.90015 0.81111 1.11135 1.91435 1.80456 1.46310 1.94886 1.20813 1.00121 0.90859 1.00820 1.20463 0.92031 0.98065 1.09166 1.17758 0.91296 0.86073 0.93607 1.44881 1.08931 1.02013 1.80156 1.21454 0.94641 0.82515 1.01151 1.22473 0.94156 0.96457 0.89840 1.87898 1.53686 1.54435 1.35334 1.20231 0.85684 0.84518 0.97467 1.21034 1.18930 1.13441 1.02140 0.91537 1.24945 0.96737 0.94899 0.97826 1.69952 1.32046 1.15793 1.35906 0.86331 0.78680 0.78563 0.82910 1.20401 1.21023 1.19595 0.91334 0.91321 0.91192 0.85218 0.85269 0.85199 0.75493 0.91444 0.91439 0.92731 0.93822 0.97598 0.97643 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.57 36.01 0.34 -0.86 16 2 C -0.14 -1.74 5.90 -104.43 -0.62 -2.35 16 3 C -0.10 -1.26 9.68 -39.54 -0.38 -1.64 16 4 C 0.02 0.32 7.30 -39.42 -0.29 0.03 16 5 F -0.15 -1.99 17.26 2.25 0.04 -1.95 16 6 C -0.11 -1.25 10.02 -39.54 -0.40 -1.65 16 7 C -0.17 -2.12 9.31 -39.39 -0.37 -2.49 16 8 C 0.22 2.91 6.63 -83.74 -0.56 2.35 16 9 N -0.73 -10.13 5.58 -58.61 -0.33 -10.46 16 10 C 0.13 1.70 5.30 -4.04 -0.02 1.68 16 11 C 0.05 0.81 6.07 37.16 0.23 1.03 16 12 O -0.39 -8.82 10.27 -35.23 -0.36 -9.19 16 13 C 0.20 5.12 5.69 36.01 0.20 5.32 16 14 C -0.52 -14.81 9.43 -34.44 -0.32 -15.14 16 15 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 18 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 24 H 0.07 0.84 6.55 -51.93 -0.34 0.50 16 25 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 26 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 27 H 0.13 1.38 6.73 -52.49 -0.35 1.03 16 28 H 0.41 5.87 6.47 -40.82 -0.26 5.61 16 29 H 0.07 0.73 7.95 -51.93 -0.41 0.32 16 30 H 0.07 0.93 7.95 -51.93 -0.41 0.52 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 304.30 15.07 4.59 4.59 Total: -1.00 -30.36 304.30 -7.33 -37.69 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.71 Total: 0.64 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.27 Total: -12.19 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.41 Total: -35.99 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.36 Total: -9.19 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.36 -7.33 -37.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385851899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.908 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds