Wall clock time and date at job start Mon Mar 30 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38266 * 119.94946 * 2 1 4 4 C 1.38502 * 120.12307 * 180.02562 * 3 2 1 5 5 F 1.35092 * 119.98550 * 179.97438 * 4 3 2 6 6 C 1.38346 * 120.02423 * 359.97438 * 4 3 2 7 7 C 1.38855 * 119.89743 * 359.97438 * 6 4 3 8 8 N 1.39671 * 120.05683 * 179.97438 * 7 6 4 9 9 C 1.46497 * 120.00000 * 0.02562 * 8 7 6 10 10 C 1.53001 * 109.46969 * 179.97438 * 9 8 7 11 11 O 1.42902 * 109.47403 * 64.99780 * 10 9 8 12 12 C 1.42896 * 114.00147 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47197 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99291 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00134 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99550 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99863 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47044 * 90.00095 * 17 15 13 19 19 H 1.48504 * 109.47111 * 209.99792 * 17 15 13 20 20 H 1.48499 * 109.47318 * 330.00079 * 17 15 13 21 21 C 1.38100 * 119.94857 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.46866 * 269.97376 * 1 2 3 23 23 H 1.08994 * 109.47243 * 29.97967 * 1 2 3 24 24 H 1.09004 * 109.46928 * 149.97854 * 1 2 3 25 25 H 1.08003 * 119.94070 * 359.97438 * 3 2 1 26 26 H 1.07991 * 120.04979 * 180.27899 * 6 4 3 27 27 H 0.97002 * 119.99794 * 179.97438 * 8 7 6 28 28 H 1.09007 * 109.47259 * 299.99639 * 9 8 7 29 29 H 1.09000 * 109.47601 * 59.99968 * 9 8 7 30 30 H 1.08999 * 109.47201 * 184.99863 * 10 9 8 31 31 H 1.09004 * 109.47161 * 304.99868 * 10 9 8 32 32 H 1.09003 * 109.47247 * 299.99858 * 12 11 10 33 33 H 1.09000 * 109.47413 * 60.00000 * 12 11 10 34 34 H 0.97006 * 119.99501 * 179.97438 * 16 15 13 35 35 H 1.07995 * 120.01423 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1980 0.0000 4 6 3.5823 1.2022 -0.0005 5 9 4.2539 2.3744 -0.0011 6 6 4.2782 0.0065 -0.0005 7 6 3.5859 -1.1972 0.0005 8 7 4.2850 -2.4063 0.0000 9 6 5.7500 -2.4053 -0.0011 10 6 6.2609 -3.8475 -0.0009 11 8 5.8824 -4.4872 -1.2213 12 6 6.3125 -5.8461 -1.3230 13 6 5.8618 -6.4183 -2.6423 14 1 5.3024 -5.8056 -3.3337 15 6 6.1627 -7.7243 -2.9662 16 7 6.8435 -8.4705 -2.1239 17 14 5.6034 -8.4337 -4.6012 18 1 6.6513 -8.1992 -5.6270 19 1 5.3723 -9.8933 -4.4544 20 1 4.3420 -7.7727 -5.0221 21 6 2.1964 -1.1966 -0.0005 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6555 2.1323 -0.0004 26 1 5.3581 0.0093 0.0036 27 1 3.8006 -3.2467 0.0011 28 1 6.1124 -1.8913 -0.8915 29 1 6.1138 -1.8912 0.8885 30 1 7.3473 -3.8481 0.0878 31 1 5.8273 -4.3864 0.8416 32 1 7.4000 -5.8886 -1.2616 33 1 5.8797 -6.4263 -0.5081 34 1 7.0549 -9.3894 -2.3516 35 1 1.6558 -2.1315 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385861568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:43 Heat of formation + Delta-G solvation = -100.021841 kcal Electronic energy + Delta-G solvation = -17555.522435 eV Core-core repulsion = 14466.558797 eV Total energy + Delta-G solvation = -3088.963638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.87222 -40.43119 -38.83045 -36.66691 -34.92075 -33.02912 -31.78421 -29.57214 -28.27093 -27.89536 -24.58940 -23.77511 -23.28138 -21.69021 -18.81531 -18.46667 -17.69278 -17.52243 -17.08726 -16.79778 -16.58866 -16.40900 -16.12232 -15.46210 -15.01149 -14.88555 -14.27648 -14.18704 -14.13746 -13.66917 -13.34495 -13.01452 -12.87543 -12.74966 -12.64809 -12.53639 -12.37366 -12.09300 -11.93946 -11.32326 -10.92703 -10.84992 -10.29066 -9.59645 -8.44750 -8.34605 -6.46881 0.27513 0.52995 1.39470 1.41417 1.53519 2.32085 2.38263 2.73533 2.99748 3.09719 3.35862 3.82424 3.99844 4.16424 4.18676 4.23104 4.40664 4.48962 4.54548 4.62804 4.74432 4.80505 4.88552 4.89407 5.00881 5.14665 5.17501 5.25989 5.34996 5.52218 5.61594 5.89167 5.93097 6.31503 6.48954 6.71422 6.77959 7.25220 8.77387 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028185 B = 0.003707 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.184754 B = 7550.538923 C = 8071.314520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.012 4.012 3 C -0.224 4.224 4 C 0.133 3.867 5 F -0.148 7.148 6 C -0.259 4.259 7 C 0.242 3.758 8 N -0.735 5.735 9 C 0.135 3.865 10 C 0.043 3.957 11 O -0.407 6.407 12 C 0.209 3.791 13 C -0.550 4.550 14 H 0.060 0.940 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.981 3.019 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.265 1.265 21 C -0.218 4.218 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.146 0.854 26 H 0.134 0.866 27 H 0.406 0.594 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.053 0.947 32 H -0.012 1.012 33 H -0.010 1.010 34 H 0.271 0.729 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.719 16.537 6.389 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.013 4.013 3 C -0.245 4.245 4 C 0.113 3.887 5 F -0.127 7.127 6 C -0.283 4.283 7 C 0.136 3.864 8 N -0.363 5.363 9 C 0.011 3.989 10 C -0.034 4.034 11 O -0.327 6.327 12 C 0.134 3.866 13 C -0.587 4.587 14 H 0.078 0.922 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.804 3.196 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.189 1.189 21 C -0.241 4.241 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.164 0.836 26 H 0.152 0.848 27 H 0.242 0.758 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.006 0.994 33 H 0.008 0.992 34 H 0.080 0.920 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.478 16.492 6.277 20.030 hybrid contribution 0.479 -0.886 -0.379 1.076 sum -8.999 15.606 5.898 18.956 Atomic orbital electron populations 1.20887 0.88367 1.04020 1.03705 1.19753 0.97501 0.90918 0.93081 1.20927 0.91472 1.00002 1.12084 1.17525 0.90600 0.80259 1.00317 1.91452 1.81017 1.46301 1.93881 1.20561 1.00807 0.90445 1.16457 1.17674 0.91452 0.85764 0.91502 1.44782 1.05703 1.05414 1.80412 1.21419 0.80247 0.94874 1.02333 1.22773 0.99666 0.93188 0.87815 1.87848 1.79074 1.27479 1.38294 1.19835 0.92804 0.77741 0.96193 1.21381 1.36612 0.97630 1.03116 0.92189 1.25913 0.94663 0.96627 1.01799 1.70059 1.39767 1.09098 1.37910 0.85217 0.79010 0.77453 0.77953 1.19418 1.19873 1.18947 1.20782 0.91593 0.99440 1.12249 0.89424 0.89989 0.90588 0.83595 0.84816 0.75824 0.92042 0.88454 0.91670 0.92929 0.99442 0.99212 0.92005 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 2 C -0.01 -0.24 5.88 -19.89 -0.12 -0.35 16 3 C -0.22 -4.86 9.68 22.34 0.22 -4.64 16 4 C 0.13 3.37 7.30 22.36 0.16 3.53 16 5 F -0.15 -3.83 17.27 44.97 0.78 -3.06 16 6 C -0.26 -6.81 9.29 22.44 0.21 -6.60 16 7 C 0.24 6.45 6.65 38.21 0.25 6.71 16 8 N -0.74 -20.53 5.68 -339.43 -1.93 -22.46 16 9 C 0.14 3.69 5.30 86.38 0.46 4.15 16 10 C 0.04 1.43 6.07 71.98 0.44 1.87 16 11 O -0.41 -18.77 10.27 -148.98 -1.53 -20.30 16 12 C 0.21 11.36 5.69 71.24 0.41 11.77 16 13 C -0.55 -32.18 9.43 25.60 0.24 -31.94 16 14 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 15 C 0.01 0.50 5.46 84.65 0.46 0.96 16 16 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 17 Si 0.98 43.79 29.54 68.60 2.03 45.81 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 C -0.22 -5.14 9.55 22.41 0.21 -4.93 16 22 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 24 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 25 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.13 3.32 6.73 -2.92 -0.02 3.30 16 27 H 0.41 11.69 8.49 -92.71 -0.79 10.91 16 28 H 0.06 1.76 7.95 -2.38 -0.02 1.75 16 29 H 0.10 2.10 7.95 -2.39 -0.02 2.08 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.05 1.68 8.14 -2.38 -0.02 1.67 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 34 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 35 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -65.03 307.89 3.59 -61.45 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.30 Total: 13.49 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 3.66 Total: -20.30 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.64 Total: -77.10 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -1.53 Total: -20.30 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.03 3.59 -61.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385861568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.575 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds