Wall clock time and date at job start Mon Mar 30 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99713 * 2 1 4 4 H 1.48498 * 109.47110 * 269.99294 * 3 2 1 5 5 H 1.48498 * 109.47063 * 29.99861 * 3 2 1 6 6 H 1.48503 * 109.47168 * 149.99499 * 3 2 1 7 7 C 1.37881 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99587 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00186 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47394 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47339 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46847 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.46808 * 179.97438 * 12 11 10 14 14 C 1.36001 * 117.00016 * 180.02562 * 13 12 11 15 15 C 1.38692 * 119.97679 * 179.97438 * 14 13 12 16 16 C 1.38162 * 120.05735 * 180.02562 * 15 14 13 17 17 C 1.38784 * 120.00135 * 0.23605 * 16 15 14 18 18 N 1.40107 * 120.02191 * 179.72089 * 17 16 15 19 19 C 1.39037 * 119.94828 * 359.48921 * 17 16 15 20 20 F 1.35094 * 120.02404 * 180.25171 * 19 17 16 21 21 C 1.38278 * 119.94240 * 0.53298 * 19 17 16 22 22 H 0.96996 * 119.99929 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47040 * 59.99983 * 9 7 2 24 24 H 1.09001 * 109.47239 * 299.99860 * 9 7 2 25 25 H 1.08999 * 109.47036 * 59.99187 * 10 9 7 26 26 H 1.09006 * 109.47119 * 300.00241 * 10 9 7 27 27 H 1.08990 * 109.47351 * 60.00008 * 11 10 9 28 28 H 1.08998 * 109.46692 * 299.99685 * 11 10 9 29 29 H 1.09004 * 109.47408 * 59.99970 * 12 11 10 30 30 H 1.08998 * 109.47212 * 299.99361 * 12 11 10 31 31 H 1.07997 * 119.97196 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.99592 * 179.97438 * 16 15 14 33 33 H 0.97000 * 119.99977 * 0.02562 * 18 17 16 34 34 H 0.96997 * 119.99554 * 179.97438 * 18 17 16 35 35 H 1.08009 * 119.99637 * 179.74895 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 6 6.0617 -4.0789 0.0015 13 8 7.4907 -4.0788 0.0020 14 6 8.1082 -5.2905 0.0009 15 6 9.4932 -5.3625 0.0008 16 6 10.1223 -6.5926 -0.0009 17 6 9.3681 -7.7577 -0.0074 18 7 10.0056 -9.0053 -0.0150 19 6 7.9796 -7.6857 -0.0015 20 9 7.2441 -8.8189 -0.0028 21 6 7.3523 -6.4534 -0.0003 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8912 24 1 3.8753 -0.6804 -0.8888 25 1 3.6586 -3.1501 -0.8892 26 1 3.6580 -3.1505 0.8907 27 1 5.9143 -2.1229 0.8926 28 1 5.9156 -2.1222 -0.8873 29 1 5.6991 -4.5920 -0.8892 30 1 5.6977 -4.5934 0.8908 31 1 10.0806 -4.4562 0.0021 32 1 11.2009 -6.6475 -0.0013 33 1 10.9743 -9.0550 -0.0153 34 1 9.4781 -9.8193 -0.0192 35 1 6.2737 -6.3965 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385885284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:18 Heat of formation + Delta-G solvation = -79.031492 kcal Electronic energy + Delta-G solvation = -17400.076221 eV Core-core repulsion = 14312.022793 eV Total energy + Delta-G solvation = -3088.053428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -48.99875 -40.11734 -37.94059 -35.05784 -34.00594 -32.35801 -30.86384 -29.58642 -27.85419 -25.29907 -23.29510 -22.20281 -21.37560 -20.15179 -18.51884 -17.55022 -17.13171 -16.63501 -16.30479 -16.24027 -15.67055 -15.29770 -14.43957 -14.20098 -14.16113 -14.02837 -13.37702 -12.89100 -12.69974 -12.34632 -12.09371 -11.99003 -11.79091 -11.36138 -11.13041 -10.75370 -10.64873 -9.97498 -9.90733 -9.73357 -9.62389 -9.18041 -9.11434 -8.52991 -7.45876 -6.03595 -4.01778 0.93306 1.29665 3.21399 3.32133 3.39462 3.43587 3.46695 3.52745 4.04224 4.46363 4.51511 4.86407 4.93058 5.13775 5.18307 5.24761 5.30747 5.49423 5.65030 5.82142 5.83903 5.90209 5.98761 6.05480 6.28000 6.41517 6.55651 6.65999 6.87589 7.07314 7.29523 7.40451 7.42507 7.42822 7.80051 8.54373 9.01159 9.58948 11.09886 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.049215 B = 0.003163 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.798013 B = 8849.141377 C = 9386.878957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.100 4.100 11 C -0.119 4.119 12 C 0.058 3.942 13 O -0.313 6.313 14 C 0.112 3.888 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.147 3.853 18 N -0.879 5.879 19 C 0.057 3.943 20 F -0.142 7.142 21 C -0.198 4.198 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.012 0.988 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.400 0.600 34 H 0.400 0.600 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.151 -15.582 0.011 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.157 4.157 12 C -0.017 4.017 13 O -0.226 6.226 14 C 0.065 3.935 15 C -0.134 4.134 16 C -0.156 4.156 17 C 0.043 3.957 18 N -0.422 5.422 19 C 0.034 3.966 20 F -0.120 7.120 21 C -0.218 4.218 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.228 0.772 34 H 0.228 0.772 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 22.001 -15.249 0.014 26.769 hybrid contribution 0.097 0.154 -0.025 0.183 sum 22.098 -15.095 -0.011 26.762 Atomic orbital electron populations 1.69917 1.06327 1.26895 1.51219 1.25048 0.94746 0.99244 0.94560 0.86759 0.80378 0.83529 0.78520 1.20291 1.21419 1.18933 1.21157 0.89546 0.94474 1.50786 0.91058 1.19562 0.97071 0.92030 0.96408 1.21407 0.90529 1.00434 1.01398 1.21713 0.97815 0.92985 1.03163 1.23057 0.76962 1.00388 1.01254 1.86125 1.22345 1.25646 1.88528 1.18555 0.91905 0.84194 0.98895 1.20282 0.91412 0.98173 1.03560 1.20277 0.99451 0.89636 1.06269 1.17645 0.89774 0.87606 1.00677 1.42253 1.09089 1.04292 1.86554 1.16817 0.87107 0.82173 1.10542 1.91442 1.76976 1.49035 1.94595 1.21096 1.01384 0.90727 1.08627 0.92746 0.96492 0.96936 0.92526 0.92509 0.91271 0.91285 0.92055 0.92049 0.84478 0.84646 0.77156 0.77219 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.97 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 10 C -0.10 -1.92 5.15 -26.73 -0.14 -2.06 16 11 C -0.12 -1.89 5.58 -26.73 -0.15 -2.04 16 12 C 0.06 0.80 4.74 37.16 0.18 0.98 16 13 O -0.31 -4.40 10.14 -19.74 -0.20 -4.60 16 14 C 0.11 1.40 6.68 -39.25 -0.26 1.14 16 15 C -0.11 -1.19 9.98 -39.44 -0.39 -1.59 16 16 C -0.13 -1.18 9.89 -39.41 -0.39 -1.57 16 17 C 0.15 1.43 6.76 -83.58 -0.57 0.86 16 18 N -0.88 -6.02 9.11 32.50 0.30 -5.72 16 19 C 0.06 0.67 7.31 -39.27 -0.29 0.39 16 20 F -0.14 -1.71 16.64 2.25 0.04 -1.67 16 21 C -0.20 -2.43 9.01 -39.40 -0.35 -2.78 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 30 H 0.06 0.79 7.66 -51.93 -0.40 0.40 16 31 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.40 1.73 8.85 -40.82 -0.36 1.37 16 34 H 0.40 2.52 8.32 -40.82 -0.34 2.18 16 35 H 0.14 1.66 6.29 -52.48 -0.33 1.33 16 LS Contribution 300.87 15.07 4.53 4.53 Total: -1.00 -31.86 300.87 -6.85 -38.71 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.72 Total: -0.51 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.91 Total: -20.59 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 1.07 Total: -33.09 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.20 Total: -4.60 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.86 -6.85 -38.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385885284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.322 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds