Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99713 * 2 1 4 4 H 1.48498 * 109.47110 * 269.99294 * 3 2 1 5 5 H 1.48498 * 109.47063 * 29.99861 * 3 2 1 6 6 H 1.48503 * 109.47168 * 149.99499 * 3 2 1 7 7 C 1.37881 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99587 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00186 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47394 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47339 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46847 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.46808 * 179.97438 * 12 11 10 14 14 C 1.36001 * 117.00016 * 180.02562 * 13 12 11 15 15 C 1.38692 * 119.97679 * 179.97438 * 14 13 12 16 16 C 1.38162 * 120.05735 * 180.02562 * 15 14 13 17 17 C 1.38784 * 120.00135 * 0.23605 * 16 15 14 18 18 N 1.40107 * 120.02191 * 179.72089 * 17 16 15 19 19 C 1.39037 * 119.94828 * 359.48921 * 17 16 15 20 20 F 1.35094 * 120.02404 * 180.25171 * 19 17 16 21 21 C 1.38278 * 119.94240 * 0.53298 * 19 17 16 22 22 H 0.96996 * 119.99929 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47040 * 59.99983 * 9 7 2 24 24 H 1.09001 * 109.47239 * 299.99860 * 9 7 2 25 25 H 1.08999 * 109.47036 * 59.99187 * 10 9 7 26 26 H 1.09006 * 109.47119 * 300.00241 * 10 9 7 27 27 H 1.08990 * 109.47351 * 60.00008 * 11 10 9 28 28 H 1.08998 * 109.46692 * 299.99685 * 11 10 9 29 29 H 1.09004 * 109.47408 * 59.99970 * 12 11 10 30 30 H 1.08998 * 109.47212 * 299.99361 * 12 11 10 31 31 H 1.07997 * 119.97196 * 0.02562 * 15 14 13 32 32 H 1.08002 * 119.99592 * 179.97438 * 16 15 14 33 33 H 0.97000 * 119.99977 * 0.02562 * 18 17 16 34 34 H 0.96997 * 119.99554 * 179.97438 * 18 17 16 35 35 H 1.08009 * 119.99637 * 179.74895 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 6 6.0617 -4.0789 0.0015 13 8 7.4907 -4.0788 0.0020 14 6 8.1082 -5.2905 0.0009 15 6 9.4932 -5.3625 0.0008 16 6 10.1223 -6.5926 -0.0009 17 6 9.3681 -7.7577 -0.0074 18 7 10.0056 -9.0053 -0.0150 19 6 7.9796 -7.6857 -0.0015 20 9 7.2441 -8.8189 -0.0028 21 6 7.3523 -6.4534 -0.0003 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8912 24 1 3.8753 -0.6804 -0.8888 25 1 3.6586 -3.1501 -0.8892 26 1 3.6580 -3.1505 0.8907 27 1 5.9143 -2.1229 0.8926 28 1 5.9156 -2.1222 -0.8873 29 1 5.6991 -4.5920 -0.8892 30 1 5.6977 -4.5934 0.8908 31 1 10.0806 -4.4562 0.0021 32 1 11.2009 -6.6475 -0.0013 33 1 10.9743 -9.0550 -0.0153 34 1 9.4781 -9.8193 -0.0192 35 1 6.2737 -6.3965 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385885284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = -99.509408 kcal Electronic energy + Delta-G solvation = -17400.964210 eV Core-core repulsion = 14312.022793 eV Total energy + Delta-G solvation = -3088.941417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -49.86849 -41.00161 -38.81797 -36.58685 -34.95082 -34.27474 -31.72445 -31.14193 -28.77926 -26.84547 -24.39734 -23.16289 -22.62038 -21.77963 -19.45056 -18.86413 -18.26356 -17.86245 -17.30591 -17.19844 -16.60768 -16.34469 -16.01490 -15.55870 -15.26997 -14.93057 -14.76719 -14.17069 -13.93753 -13.75560 -13.45369 -13.32010 -12.86518 -12.72997 -12.53211 -12.06818 -11.98513 -11.74100 -11.49484 -11.39433 -11.29285 -10.80180 -10.75564 -9.91652 -8.28992 -8.21519 -6.33359 0.13082 0.47999 1.37480 1.39342 1.51773 2.24194 2.37486 2.66383 2.90403 3.06547 3.24627 3.71490 3.99352 4.01130 4.05594 4.16251 4.32907 4.46089 4.50885 4.63495 4.76339 4.90625 5.06129 5.08104 5.10143 5.15330 5.17130 5.27774 5.53670 5.61820 5.64021 5.67814 6.28694 6.36620 6.53052 6.75101 6.93532 7.31536 8.87914 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.049215 B = 0.003163 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.798013 B = 8849.141377 C = 9386.878957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.013 4.013 10 C -0.094 4.094 11 C -0.109 4.109 12 C 0.064 3.936 13 O -0.324 6.324 14 C 0.084 3.916 15 C -0.111 4.111 16 C -0.127 4.127 17 C 0.153 3.847 18 N -0.867 5.867 19 C 0.030 3.970 20 F -0.149 7.149 21 C -0.208 4.208 22 H 0.266 0.734 23 H 0.022 0.978 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.414 0.586 34 H 0.403 0.597 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.478 -15.386 -0.006 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.050 4.050 10 C -0.131 4.131 11 C -0.146 4.146 12 C -0.011 4.011 13 O -0.239 6.239 14 C 0.038 3.962 15 C -0.131 4.131 16 C -0.149 4.149 17 C 0.047 3.953 18 N -0.410 5.410 19 C 0.006 3.994 20 F -0.128 7.128 21 C -0.228 4.228 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.246 0.754 34 H 0.232 0.768 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 25.371 -15.098 -0.003 29.524 hybrid contribution -0.924 -0.062 -0.022 0.926 sum 24.447 -15.160 -0.025 28.766 Atomic orbital electron populations 1.70077 1.08390 1.28192 1.52785 1.26082 0.95662 1.03756 0.94110 0.85606 0.79528 0.77949 0.79263 1.19097 1.21046 1.16769 1.21553 0.92345 0.93105 1.50315 0.95059 1.19537 0.93659 0.95080 0.96762 1.21245 0.93163 0.97529 1.01199 1.21492 0.94988 0.94588 1.03539 1.22855 0.77508 0.98905 1.01811 1.86056 1.21912 1.26696 1.89204 1.18790 0.92818 0.83569 1.01071 1.20597 0.90617 0.99568 1.02280 1.20651 1.01061 0.88491 1.04689 1.17827 0.89189 0.89020 0.99239 1.42284 1.10004 1.03489 1.85264 1.17020 0.88102 0.81833 1.12492 1.91414 1.77337 1.49256 1.94831 1.21123 1.01342 0.91226 1.09137 0.92510 0.95993 0.96111 0.92808 0.92836 0.90917 0.90855 0.91596 0.91608 0.82838 0.81117 0.75437 0.76821 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 2 C 0.00 0.02 5.47 84.66 0.46 0.48 16 3 Si 0.95 44.67 27.47 68.60 1.88 46.55 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 7 C -0.54 -31.35 9.66 25.60 0.25 -31.10 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 9 C -0.01 -0.61 4.04 29.85 0.12 -0.49 16 10 C -0.09 -3.56 5.15 30.59 0.16 -3.40 16 11 C -0.11 -3.29 5.58 30.59 0.17 -3.12 16 12 C 0.06 1.71 4.74 71.98 0.34 2.05 16 13 O -0.32 -8.76 10.14 -93.56 -0.95 -9.70 16 14 C 0.08 2.02 6.68 22.49 0.15 2.17 16 15 C -0.11 -2.05 9.98 22.36 0.22 -1.82 16 16 C -0.13 -1.83 9.89 22.38 0.22 -1.60 16 17 C 0.15 2.64 6.76 38.14 0.26 2.89 16 18 N -0.87 -9.59 9.11 -51.10 -0.47 -10.05 16 19 C 0.03 0.67 7.31 22.47 0.16 0.84 16 20 F -0.15 -3.57 16.64 44.97 0.75 -2.82 16 21 C -0.21 -5.04 9.01 22.39 0.20 -4.84 16 22 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 23 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 24 H 0.02 0.93 7.57 -2.39 -0.02 0.92 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 27 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.07 1.68 7.66 -2.39 -0.02 1.66 16 30 H 0.07 1.68 7.66 -2.39 -0.02 1.66 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.41 2.20 8.85 -92.71 -0.82 1.38 16 34 H 0.40 4.25 8.32 -92.71 -0.77 3.48 16 35 H 0.14 3.29 6.29 -2.91 -0.02 3.27 16 Total: -1.00 -69.59 300.87 3.70 -65.89 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -0.54 Total: 8.55 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 2.72 Total: -37.95 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -0.17 Total: -70.52 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.95 Total: -9.70 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.75 Total: -2.82 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -69.59 3.70 -65.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385885284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.624 kcal (2) G-P(sol) polarization free energy of solvation -69.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds