Wall clock time and date at job start Mon Mar 30 2020 07:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47346 * 240.00346 * 2 1 3 5 5 C 1.53000 * 109.47328 * 119.99947 * 2 1 3 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 2 1 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 5 2 8 8 N 1.29031 * 124.91736 * 89.99650 * 7 6 5 9 9 C 1.31780 * 117.12711 * 179.97438 * 8 7 6 10 10 C 1.50702 * 122.74877 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46981 * 265.00174 * 10 9 8 12 12 H 1.08000 * 119.99652 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99977 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00027 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99783 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47116 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46591 * 120.00446 * 15 13 11 18 18 H 1.48500 * 109.47314 * 239.99882 * 15 13 11 19 19 C 1.33637 * 114.50002 * 0.02562 * 9 8 7 20 20 S 1.70980 * 124.91855 * 269.69899 * 7 6 5 21 21 H 1.08992 * 109.47554 * 299.99692 * 1 2 3 22 22 H 1.09004 * 109.47108 * 59.99942 * 1 2 3 23 23 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47508 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47437 * 300.00386 * 3 2 1 26 26 H 1.09001 * 109.47109 * 59.99598 * 3 2 1 27 27 H 1.09000 * 109.46986 * 299.99746 * 4 2 1 28 28 H 1.08993 * 109.47662 * 59.99968 * 4 2 1 29 29 H 1.09002 * 109.47075 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47398 * 180.02562 * 5 2 1 31 31 H 1.09001 * 109.47194 * 300.00476 * 5 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 33 33 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 34 34 H 1.09000 * 109.47097 * 24.99608 * 10 9 8 35 35 H 1.08998 * 109.46894 * 145.00235 * 10 9 8 36 36 H 0.97003 * 120.00314 * 180.02562 * 14 13 11 37 37 H 1.07997 * 126.03814 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5301 -2.1637 1.2492 7 6 2.0319 -2.8740 2.4799 8 7 1.4137 -2.9166 3.6118 9 6 1.9941 -3.5840 4.5886 10 6 1.3847 -3.7155 5.9607 11 6 1.9457 -2.6475 6.8639 12 1 2.6707 -1.9438 6.4825 13 6 1.5326 -2.5683 8.1769 14 7 0.6494 -3.4250 8.6412 15 14 2.2286 -1.2450 9.2968 16 1 3.1980 -0.4143 8.5383 17 1 1.1239 -0.3861 9.7939 18 1 2.9166 -1.8823 10.4482 19 6 3.1674 -4.1346 4.2630 20 16 3.4993 -3.7462 2.5766 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6768 -0.2074 -2.1392 29 1 3.1300 -0.7215 -1.2490 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -0.2074 2.1392 32 1 0.4401 -2.1638 1.2492 33 1 1.8934 -2.6776 0.3593 34 1 0.3031 -3.6004 5.8903 35 1 1.6198 -4.6979 6.3700 36 1 0.3585 -3.3690 9.5649 37 1 3.7983 -4.7188 4.9164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389368349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:32 Heat of formation + Delta-G solvation = 5.648956 kcal Electronic energy + Delta-G solvation = -16215.970825 eV Core-core repulsion = 13697.802593 eV Total energy + Delta-G solvation = -2518.168233 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -39.26077 -37.99461 -33.47637 -32.22781 -29.61507 -27.41120 -27.35924 -27.21860 -25.03875 -23.51965 -21.17055 -19.02906 -18.66950 -16.86939 -16.33861 -15.31212 -14.87967 -14.67698 -14.44500 -13.97801 -13.71680 -13.52526 -12.68519 -12.55357 -12.39276 -12.16043 -11.90011 -11.81479 -11.75438 -11.53820 -11.10867 -11.05059 -10.71452 -10.65580 -10.57962 -10.50141 -10.45162 -9.73307 -9.43322 -8.93982 -8.75835 -8.42736 -7.87340 -6.04717 -4.07574 1.39515 1.99455 2.37855 3.29904 3.36845 3.41735 3.67339 4.44691 4.47994 4.73357 4.74240 4.84920 5.20856 5.30911 5.38009 5.43424 5.54410 5.57672 5.62078 5.69283 5.82306 5.84050 5.92278 6.00466 6.01283 6.08983 6.11756 6.21278 6.35499 6.39005 6.41251 7.06641 7.48950 7.57009 7.90922 8.29007 8.60365 8.95310 9.55346 11.05788 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022553 B = 0.005114 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.207143 B = 5473.659678 C = 6136.379915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.103 4.103 6 C -0.040 4.040 7 C 0.045 3.955 8 N -0.458 5.458 9 C 0.111 3.889 10 C 0.084 3.916 11 C -0.508 4.508 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.262 4.262 20 S 0.040 5.960 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 4.078 -18.334 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.142 4.142 6 C -0.081 4.081 7 C -0.234 4.234 8 N -0.173 5.173 9 C -0.018 4.018 10 C 0.044 3.956 11 C -0.547 4.547 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.400 4.400 20 S 0.293 5.707 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.598 4.053 -18.809 19.574 hybrid contribution 0.088 0.580 1.651 1.752 sum 3.686 4.633 -17.158 18.151 Atomic orbital electron populations 1.21949 0.94482 1.02144 1.01688 1.20538 0.95861 0.95393 0.95059 1.21863 1.00922 0.95370 1.01691 1.21953 1.01000 1.00428 0.96826 1.21651 1.00679 0.93937 0.97931 1.20330 1.02114 0.94581 0.91079 1.26965 0.95357 1.02765 0.98285 1.66197 1.33960 1.18135 0.98986 1.21237 0.91580 0.91932 0.97040 1.18003 0.96688 0.98007 0.82913 1.21014 1.24638 1.14318 0.94694 0.92618 1.24970 0.95069 0.96183 0.97998 1.69959 1.31287 1.36252 1.15775 0.86455 0.78945 0.81683 0.80490 1.19753 1.20857 1.20887 1.26660 1.03366 1.13237 0.96714 1.83465 1.25545 1.50555 1.11151 0.92338 0.92966 0.92187 0.92722 0.92803 0.92510 0.92290 0.92857 0.92655 0.91746 0.90930 0.88945 0.90101 0.94332 0.94520 0.92830 0.81209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.12 37.16 0.30 -1.10 16 2 C -0.07 -0.67 0.80 -154.51 -0.12 -0.79 16 3 C -0.14 -1.30 8.47 37.16 0.31 -0.98 16 4 C -0.14 -1.23 8.12 37.16 0.30 -0.93 16 5 C -0.10 -1.26 4.25 -26.73 -0.11 -1.38 16 6 C -0.04 -0.53 5.09 -27.89 -0.14 -0.67 16 7 C 0.05 0.80 6.64 -13.46 -0.09 0.71 16 8 N -0.46 -10.08 10.53 -8.06 -0.08 -10.17 16 9 C 0.11 2.60 5.93 -84.23 -0.50 2.10 16 10 C 0.08 2.25 5.39 -29.03 -0.16 2.10 16 11 C -0.51 -14.66 9.09 -34.44 -0.31 -14.97 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 15 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.26 -5.29 11.14 29.12 0.32 -4.97 16 20 S 0.04 0.66 23.18 -107.50 -2.49 -1.83 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.22 6.43 -51.93 -0.33 0.89 16 33 H 0.08 0.88 6.43 -51.93 -0.33 0.55 16 34 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.17 3.18 8.06 -52.49 -0.42 2.75 16 LS Contribution 315.75 15.07 4.76 4.76 Total: -1.00 -30.77 315.75 -8.34 -39.11 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.95 Total: -3.50 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.29 Total: -19.28 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.65 Total: -36.14 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.49 Total: -1.83 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.77 -8.34 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389368349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.760 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds