Wall clock time and date at job start Mon Mar 30 2020 07:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47302 * 2 1 4 4 C 1.53002 * 109.47346 * 240.00346 * 2 1 3 5 5 C 1.53000 * 109.47328 * 119.99947 * 2 1 3 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 2 1 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 5 2 8 8 N 1.29031 * 124.91736 * 89.99650 * 7 6 5 9 9 C 1.31780 * 117.12711 * 179.97438 * 8 7 6 10 10 C 1.50702 * 122.74877 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46981 * 265.00174 * 10 9 8 12 12 H 1.08000 * 119.99652 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99977 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00027 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99783 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47116 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46591 * 120.00446 * 15 13 11 18 18 H 1.48500 * 109.47314 * 239.99882 * 15 13 11 19 19 C 1.33637 * 114.50002 * 0.02562 * 9 8 7 20 20 S 1.70980 * 124.91855 * 269.69899 * 7 6 5 21 21 H 1.08992 * 109.47554 * 299.99692 * 1 2 3 22 22 H 1.09004 * 109.47108 * 59.99942 * 1 2 3 23 23 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47508 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47437 * 300.00386 * 3 2 1 26 26 H 1.09001 * 109.47109 * 59.99598 * 3 2 1 27 27 H 1.09000 * 109.46986 * 299.99746 * 4 2 1 28 28 H 1.08993 * 109.47662 * 59.99968 * 4 2 1 29 29 H 1.09002 * 109.47075 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47398 * 180.02562 * 5 2 1 31 31 H 1.09001 * 109.47194 * 300.00476 * 5 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 33 33 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 34 34 H 1.09000 * 109.47097 * 24.99608 * 10 9 8 35 35 H 1.08998 * 109.46894 * 145.00235 * 10 9 8 36 36 H 0.97003 * 120.00314 * 180.02562 * 14 13 11 37 37 H 1.07997 * 126.03814 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5301 -2.1637 1.2492 7 6 2.0319 -2.8740 2.4799 8 7 1.4137 -2.9166 3.6118 9 6 1.9941 -3.5840 4.5886 10 6 1.3847 -3.7155 5.9607 11 6 1.9457 -2.6475 6.8639 12 1 2.6707 -1.9438 6.4825 13 6 1.5326 -2.5683 8.1769 14 7 0.6494 -3.4250 8.6412 15 14 2.2286 -1.2450 9.2968 16 1 3.1980 -0.4143 8.5383 17 1 1.1239 -0.3861 9.7939 18 1 2.9166 -1.8823 10.4482 19 6 3.1674 -4.1346 4.2630 20 16 3.4993 -3.7462 2.5766 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6768 -0.2074 -2.1392 29 1 3.1300 -0.7215 -1.2490 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -0.2074 2.1392 32 1 0.4401 -2.1638 1.2492 33 1 1.8934 -2.6776 0.3593 34 1 0.3031 -3.6004 5.8903 35 1 1.6198 -4.6979 6.3700 36 1 0.3585 -3.3690 9.5649 37 1 3.7983 -4.7188 4.9164 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389368349.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:31 Heat of formation + Delta-G solvation = -11.679215 kcal Electronic energy + Delta-G solvation = -16216.722231 eV Core-core repulsion = 13697.802593 eV Total energy + Delta-G solvation = -2518.919638 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78805 -38.91434 -35.46335 -33.73241 -31.26752 -29.03899 -28.11222 -28.06036 -26.41551 -25.35908 -22.63096 -20.58886 -19.48321 -18.61624 -18.35496 -16.70676 -16.40524 -15.83720 -15.65366 -15.20910 -14.84893 -14.73781 -14.23235 -14.07260 -13.72486 -13.52225 -13.36458 -12.95186 -12.70558 -12.67061 -12.63465 -12.50582 -12.38689 -11.95948 -11.68272 -11.65027 -11.44445 -11.39138 -11.36965 -10.65718 -10.43392 -10.23515 -9.44382 -8.24978 -6.37957 -0.09976 0.56773 0.84491 1.36456 1.37634 1.50819 2.00692 2.39985 3.05815 3.23467 3.86016 3.91418 3.94651 4.24001 4.34405 4.45862 4.48557 4.67432 4.69829 4.75411 4.83616 4.89527 4.97807 5.08201 5.11120 5.15131 5.16060 5.19360 5.28201 5.35037 5.43153 5.47074 5.56857 5.61114 5.67060 6.09602 6.70946 7.04056 7.29957 8.85638 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022553 B = 0.005114 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.207143 B = 5473.659678 C = 6136.379915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.143 4.143 5 C -0.099 4.099 6 C -0.039 4.039 7 C 0.042 3.958 8 N -0.505 5.505 9 C 0.079 3.921 10 C 0.093 3.907 11 C -0.527 4.527 12 H 0.048 0.952 13 C 0.008 3.992 14 N -0.928 5.928 15 Si 0.969 3.031 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.270 1.270 19 C -0.279 4.279 20 S 0.142 5.858 21 H 0.042 0.958 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.002 0.998 35 H 0.019 0.981 36 H 0.268 0.732 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 4.929 -20.410 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.138 4.138 6 C -0.080 4.080 7 C -0.236 4.236 8 N -0.221 5.221 9 C -0.051 4.051 10 C 0.053 3.947 11 C -0.566 4.566 12 H 0.066 0.934 13 C -0.191 4.191 14 N -0.568 5.568 15 Si 0.793 3.207 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.195 1.195 19 C -0.417 4.417 20 S 0.396 5.604 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.020 0.980 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.238 4.897 -20.908 22.103 hybrid contribution -0.399 0.288 2.178 2.233 sum 4.840 5.185 -18.730 20.028 Atomic orbital electron populations 1.21965 0.94572 1.02152 1.01702 1.20512 0.95763 0.95631 0.94511 1.21868 1.01176 0.94976 1.01841 1.21946 1.01346 1.00549 0.96209 1.21621 1.00793 0.93209 0.98174 1.20568 1.02271 0.95029 0.90130 1.27730 0.95932 1.01828 0.98152 1.66122 1.35849 1.19903 1.00196 1.20722 0.93249 0.94842 0.96242 1.17644 0.94650 0.96700 0.85721 1.21250 1.24877 1.14780 0.95654 0.93355 1.25899 0.95191 0.98498 0.99507 1.70075 1.32300 1.37906 1.16469 0.85344 0.78380 0.78629 0.78364 1.19269 1.20101 1.19499 1.26856 1.02447 1.12312 1.00059 1.83007 1.22932 1.48058 1.06397 0.93912 0.91395 0.92206 0.92331 0.91349 0.93711 0.91838 0.91615 0.92129 0.91357 0.93850 0.89039 0.86819 0.97967 0.96262 0.92347 0.80459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.12 71.98 0.58 -2.04 16 2 C -0.06 -1.12 0.80 -52.18 -0.04 -1.16 16 3 C -0.14 -2.33 8.47 71.98 0.61 -1.72 16 4 C -0.14 -1.93 8.12 71.98 0.58 -1.34 16 5 C -0.10 -2.29 4.25 30.59 0.13 -2.16 16 6 C -0.04 -0.97 5.09 29.85 0.15 -0.81 16 7 C 0.04 1.43 6.64 88.52 0.59 2.02 16 8 N -0.50 -22.72 10.53 -179.40 -1.89 -24.61 16 9 C 0.08 3.82 5.93 41.52 0.25 4.07 16 10 C 0.09 5.29 5.39 29.10 0.16 5.45 16 11 C -0.53 -31.57 9.09 25.60 0.23 -31.34 16 12 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 13 C 0.01 0.44 5.46 84.65 0.46 0.90 16 14 N -0.93 -57.03 13.29 21.44 0.28 -56.74 16 15 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 19 C -0.28 -11.20 11.14 66.78 0.74 -10.45 16 20 S 0.14 4.28 23.18 -56.49 -1.31 2.97 16 21 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.06 1.06 6.43 -2.39 -0.02 1.04 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.80 6.43 -2.39 -0.02 0.78 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 2.31 6.43 -2.39 -0.02 2.30 16 33 H 0.11 2.05 6.43 -2.39 -0.02 2.04 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 35 H 0.02 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.18 6.63 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -68.83 315.75 4.59 -64.24 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 1.03 Total: 5.27 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 4.45 Total: -38.58 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -1.60 Total: -81.35 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.31 Total: 2.97 kcal Total: -68.83 4.59 -64.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389368349.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.560 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds