Wall clock time and date at job start Mon Mar 30 2020 07:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46969 * 120.00012 * 2 1 3 5 5 C 1.53001 * 109.47219 * 66.50251 * 4 2 1 6 6 H 1.09004 * 109.46873 * 173.55724 * 5 4 2 7 7 C 1.50693 * 109.47308 * 293.55893 * 5 4 2 8 8 H 1.08002 * 119.99727 * 120.00006 * 7 5 4 9 9 C 1.37876 * 120.00191 * 300.00015 * 7 5 4 10 10 N 1.31510 * 120.00034 * 180.02562 * 9 7 5 11 11 Si 1.86802 * 119.99949 * 359.97438 * 9 7 5 12 12 H 1.48497 * 109.46734 * 90.00146 * 11 9 7 13 13 H 1.48492 * 109.47251 * 210.00276 * 11 9 7 14 14 H 1.48495 * 109.47065 * 330.00212 * 11 9 7 15 15 N 1.46900 * 109.47065 * 53.56065 * 5 4 2 16 16 C 1.46901 * 111.00340 * 86.30979 * 15 5 4 17 17 C 1.50700 * 109.47432 * 185.07385 * 16 15 5 18 18 C 1.38423 * 122.53596 * 90.00159 * 17 16 15 19 19 C 1.33384 * 114.92162 * 179.97438 * 18 17 16 20 20 S 1.75888 * 109.59277 * 0.02562 * 19 18 17 21 21 C 1.33382 * 122.54059 * 269.71320 * 17 16 15 22 22 H 1.08995 * 109.47080 * 169.84179 * 1 2 3 23 23 H 1.08996 * 109.47046 * 289.84902 * 1 2 3 24 24 H 1.09007 * 109.46782 * 49.84692 * 1 2 3 25 25 H 1.09007 * 109.46902 * 239.99652 * 2 1 3 26 26 H 1.09001 * 109.46948 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46984 * 299.99848 * 3 2 1 28 28 H 1.08997 * 109.47589 * 59.99919 * 3 2 1 29 29 H 1.08998 * 109.47225 * 186.50966 * 4 2 1 30 30 H 1.09004 * 109.46684 * 306.50817 * 4 2 1 31 31 H 0.97005 * 120.00030 * 180.02562 * 10 9 7 32 32 H 1.00897 * 111.00222 * 210.26940 * 15 5 4 33 33 H 1.09000 * 109.46679 * 305.07925 * 16 15 5 34 34 H 1.08998 * 109.46623 * 65.07197 * 16 15 5 35 35 H 1.08005 * 122.54542 * 359.95738 * 18 17 16 36 36 H 1.08004 * 125.20940 * 180.02562 * 19 18 17 37 37 H 1.08000 * 125.20654 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6678 -2.2032 1.1703 6 1 2.1280 -2.7382 2.0010 7 6 0.1699 -2.3497 1.2465 8 1 -0.3696 -2.8119 0.4330 9 6 -0.5118 -1.8936 2.3548 10 7 -1.8190 -2.0219 2.4216 11 14 0.4213 -1.0949 3.7621 12 1 0.5157 0.3682 3.5261 13 1 -0.2968 -1.3452 5.0375 14 1 1.7870 -1.6726 3.8415 15 7 2.1504 -2.7623 -0.0995 16 6 3.5432 -3.2138 0.0195 17 6 4.0424 -3.6643 -1.3291 18 6 4.6595 -2.8033 -2.2202 19 6 5.0418 -3.3627 -3.3691 20 16 4.6163 -5.0693 -3.3645 21 6 3.9281 -4.9240 -1.7524 22 1 -0.3633 -1.0115 -0.1812 23 1 -0.3633 0.3489 0.9666 24 1 -0.3633 0.6627 -0.7855 25 1 1.8934 -0.5139 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8899 29 1 3.1237 -0.6215 1.3095 30 1 1.5846 -0.2790 2.1354 31 1 -2.2987 -1.7008 3.2011 32 1 1.5531 -3.5117 -0.4150 33 1 4.1619 -2.3920 0.3801 34 1 3.5969 -4.0447 0.7229 35 1 4.8191 -1.7576 -2.0019 36 1 5.5369 -2.8468 -4.1786 37 1 3.4794 -5.7308 -1.1919 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389893031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:45 Heat of formation + Delta-G solvation = 31.931232 kcal Electronic energy + Delta-G solvation = -17083.400655 eV Core-core repulsion = 14566.372108 eV Total energy + Delta-G solvation = -2517.028548 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -38.36262 -36.92701 -33.64942 -32.33424 -30.03004 -28.24628 -26.18109 -25.49839 -24.64825 -22.29914 -20.31962 -18.88175 -18.56189 -17.56775 -16.58106 -15.38134 -15.10475 -14.09780 -13.89155 -13.75599 -13.31083 -12.91938 -12.80925 -12.65296 -12.41097 -12.14113 -11.99815 -11.69028 -11.35823 -11.03343 -10.78557 -10.71088 -10.59769 -10.36231 -9.90977 -9.80725 -9.53074 -9.15323 -8.96471 -8.64606 -8.43640 -8.22626 -7.45277 -6.10018 -4.01242 1.17108 1.81456 2.12280 2.92065 3.26392 3.36388 3.37269 4.38366 5.04595 5.17572 5.22637 5.36318 5.58385 5.70985 5.81567 5.89142 5.89933 5.99840 6.09204 6.20492 6.35161 6.48648 6.57126 6.58837 6.69245 6.73336 6.81063 6.97021 7.05050 7.09550 7.33947 7.56105 7.59569 7.90741 7.97901 8.33220 8.58680 8.90760 9.52020 11.02276 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.006050 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.298283 B = 4627.320870 C = 5061.449861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 C -0.148 4.148 4 C -0.104 4.104 5 C 0.184 3.816 6 H 0.001 0.999 7 C -0.506 4.506 8 H 0.081 0.919 9 C 0.077 3.923 10 N -0.895 5.895 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.299 1.299 14 H -0.269 1.269 15 N -0.668 5.668 16 C 0.113 3.887 17 C -0.082 4.082 18 C -0.110 4.110 19 C -0.219 4.219 20 S 0.066 5.934 21 C -0.208 4.208 22 H 0.100 0.900 23 H 0.038 0.962 24 H 0.012 0.988 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.028 0.972 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.340 0.660 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.416 -1.687 -8.003 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.206 4.206 4 C -0.142 4.142 5 C 0.075 3.925 6 H 0.018 0.982 7 C -0.544 4.544 8 H 0.099 0.901 9 C -0.126 4.126 10 N -0.533 5.533 11 Si 0.711 3.289 12 H -0.204 1.204 13 H -0.227 1.227 14 H -0.195 1.195 15 N -0.299 5.299 16 C -0.019 4.019 17 C -0.095 4.095 18 C -0.141 4.141 19 C -0.354 4.354 20 S 0.328 5.672 21 C -0.344 4.344 22 H 0.118 0.882 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.157 0.843 36 H 0.177 0.823 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.592 -2.231 -9.190 15.748 hybrid contribution 0.125 1.007 2.418 2.622 sum 12.717 -1.224 -6.772 14.460 Atomic orbital electron populations 1.22100 0.94436 1.03879 0.98707 1.20768 0.96822 0.92554 0.98833 1.21959 0.99557 0.98698 1.00379 1.21884 0.96882 0.98233 0.97239 1.19578 0.96071 0.90864 0.85949 0.98197 1.20863 0.89218 1.39642 1.04639 0.90091 1.24788 0.94546 0.95532 0.97694 1.69869 1.06651 1.46952 1.29811 0.86983 0.80118 0.80091 0.81753 1.20364 1.22708 1.19456 1.60492 1.00101 1.37130 1.32208 1.20631 0.92784 0.98240 0.90271 1.19046 0.99747 0.92177 0.98496 1.20108 0.99695 1.01102 0.93168 1.25495 1.09932 0.97150 1.02822 1.84077 1.58505 1.08944 1.15629 1.25445 1.09108 1.01055 0.98840 0.88152 0.94260 0.96912 0.90384 0.94101 0.93778 0.93930 0.95318 0.93760 0.92658 0.84156 0.90878 0.95225 0.84268 0.82286 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 7.75 37.16 0.29 -2.70 16 2 C -0.07 -1.43 2.79 -90.62 -0.25 -1.68 16 3 C -0.15 -2.59 9.17 37.15 0.34 -2.25 16 4 C -0.10 -2.23 4.19 -26.73 -0.11 -2.35 16 5 C 0.18 4.10 1.89 -68.87 -0.13 3.97 16 6 H 0.00 0.01 6.89 -51.93 -0.36 -0.35 16 7 C -0.51 -13.02 5.73 -34.44 -0.20 -13.22 16 8 H 0.08 2.26 7.39 -52.49 -0.39 1.88 16 9 C 0.08 2.09 4.32 -17.82 -0.08 2.01 16 10 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 11 Si 0.88 21.58 24.19 -169.99 -4.11 17.46 16 12 H -0.28 -6.71 6.82 56.52 0.39 -6.33 16 13 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 14 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 15 N -0.67 -12.75 5.11 -109.22 -0.56 -13.31 16 16 C 0.11 1.84 5.70 -4.98 -0.03 1.81 16 17 C -0.08 -1.19 5.36 -106.25 -0.57 -1.76 16 18 C -0.11 -1.48 9.98 -41.21 -0.41 -1.89 16 19 C -0.22 -2.60 11.23 29.04 0.33 -2.28 16 20 S 0.07 0.78 23.34 -107.50 -2.51 -1.73 16 21 C -0.21 -2.79 10.98 29.04 0.32 -2.47 16 22 H 0.10 2.48 5.10 -51.93 -0.26 2.21 16 23 H 0.04 0.94 7.12 -51.93 -0.37 0.57 16 24 H 0.01 0.24 8.11 -51.92 -0.42 -0.18 16 25 H 0.08 1.57 7.21 -51.93 -0.37 1.19 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.56 7.62 -51.93 -0.40 0.16 16 30 H 0.04 1.03 3.16 -51.93 -0.16 0.86 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.34 6.63 8.24 -39.29 -0.32 6.31 16 33 H 0.07 1.18 7.53 -51.93 -0.39 0.79 16 34 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.16 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 299.55 15.07 4.51 4.51 Total: -1.00 -27.24 299.55 -7.99 -35.23 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.59 Total: 5.90 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -0.50 Total: -22.82 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.22 Total: -38.55 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.11 Total: 17.46 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.24 -7.99 -35.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389893031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.158 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds