Wall clock time and date at job start Mon Mar 30 2020 07:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46969 * 120.00012 * 2 1 3 5 5 C 1.53001 * 109.47219 * 66.50251 * 4 2 1 6 6 H 1.09004 * 109.46873 * 173.55724 * 5 4 2 7 7 C 1.50693 * 109.47308 * 293.55893 * 5 4 2 8 8 H 1.08002 * 119.99727 * 120.00006 * 7 5 4 9 9 C 1.37876 * 120.00191 * 300.00015 * 7 5 4 10 10 N 1.31510 * 120.00034 * 180.02562 * 9 7 5 11 11 Si 1.86802 * 119.99949 * 359.97438 * 9 7 5 12 12 H 1.48497 * 109.46734 * 90.00146 * 11 9 7 13 13 H 1.48492 * 109.47251 * 210.00276 * 11 9 7 14 14 H 1.48495 * 109.47065 * 330.00212 * 11 9 7 15 15 N 1.46900 * 109.47065 * 53.56065 * 5 4 2 16 16 C 1.46901 * 111.00340 * 86.30979 * 15 5 4 17 17 C 1.50700 * 109.47432 * 185.07385 * 16 15 5 18 18 C 1.38423 * 122.53596 * 90.00159 * 17 16 15 19 19 C 1.33384 * 114.92162 * 179.97438 * 18 17 16 20 20 S 1.75888 * 109.59277 * 0.02562 * 19 18 17 21 21 C 1.33382 * 122.54059 * 269.71320 * 17 16 15 22 22 H 1.08995 * 109.47080 * 169.84179 * 1 2 3 23 23 H 1.08996 * 109.47046 * 289.84902 * 1 2 3 24 24 H 1.09007 * 109.46782 * 49.84692 * 1 2 3 25 25 H 1.09007 * 109.46902 * 239.99652 * 2 1 3 26 26 H 1.09001 * 109.46948 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46984 * 299.99848 * 3 2 1 28 28 H 1.08997 * 109.47589 * 59.99919 * 3 2 1 29 29 H 1.08998 * 109.47225 * 186.50966 * 4 2 1 30 30 H 1.09004 * 109.46684 * 306.50817 * 4 2 1 31 31 H 0.97005 * 120.00030 * 180.02562 * 10 9 7 32 32 H 1.00897 * 111.00222 * 210.26940 * 15 5 4 33 33 H 1.09000 * 109.46679 * 305.07925 * 16 15 5 34 34 H 1.08998 * 109.46623 * 65.07197 * 16 15 5 35 35 H 1.08005 * 122.54542 * 359.95738 * 18 17 16 36 36 H 1.08004 * 125.20940 * 180.02562 * 19 18 17 37 37 H 1.08000 * 125.20654 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6678 -2.2032 1.1703 6 1 2.1280 -2.7382 2.0010 7 6 0.1699 -2.3497 1.2465 8 1 -0.3696 -2.8119 0.4330 9 6 -0.5118 -1.8936 2.3548 10 7 -1.8190 -2.0219 2.4216 11 14 0.4213 -1.0949 3.7621 12 1 0.5157 0.3682 3.5261 13 1 -0.2968 -1.3452 5.0375 14 1 1.7870 -1.6726 3.8415 15 7 2.1504 -2.7623 -0.0995 16 6 3.5432 -3.2138 0.0195 17 6 4.0424 -3.6643 -1.3291 18 6 4.6595 -2.8033 -2.2202 19 6 5.0418 -3.3627 -3.3691 20 16 4.6163 -5.0693 -3.3645 21 6 3.9281 -4.9240 -1.7524 22 1 -0.3633 -1.0115 -0.1812 23 1 -0.3633 0.3489 0.9666 24 1 -0.3633 0.6627 -0.7855 25 1 1.8934 -0.5139 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8899 29 1 3.1237 -0.6215 1.3095 30 1 1.5846 -0.2790 2.1354 31 1 -2.2987 -1.7008 3.2011 32 1 1.5531 -3.5117 -0.4150 33 1 4.1619 -2.3920 0.3801 34 1 3.5969 -4.0447 0.7229 35 1 4.8191 -1.7576 -2.0019 36 1 5.5369 -2.8468 -4.1786 37 1 3.4794 -5.7308 -1.1919 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389893031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:43 Heat of formation + Delta-G solvation = 15.796199 kcal Electronic energy + Delta-G solvation = -17084.100323 eV Core-core repulsion = 14566.372108 eV Total energy + Delta-G solvation = -2517.728215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -39.62380 -38.43093 -35.13716 -34.33980 -31.39469 -29.62146 -27.94822 -26.93528 -26.29643 -23.42461 -22.07236 -20.57406 -19.66555 -18.84695 -18.25391 -17.13490 -16.23364 -15.67655 -15.59559 -15.37040 -14.91650 -14.49172 -14.22440 -13.89167 -13.60170 -13.53418 -13.39819 -13.16895 -12.79314 -12.67871 -12.46914 -12.40026 -12.27822 -11.72526 -11.51805 -11.46563 -11.37581 -10.90999 -10.85816 -10.47878 -9.64744 -9.23317 -9.00443 -8.22369 -6.14233 0.17961 0.85719 1.14764 1.30455 1.34797 1.41984 1.86663 2.34655 3.14054 3.71576 4.05400 4.22169 4.23720 4.33681 4.43196 4.53626 4.64191 4.71762 4.81204 4.86477 4.91695 4.98915 5.03622 5.18422 5.21314 5.26441 5.27518 5.40541 5.55423 5.60973 5.66929 5.72233 5.90242 6.06582 6.11149 6.56622 6.70463 6.88743 7.41726 8.93264 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.006050 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.298283 B = 4627.320870 C = 5061.449861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.143 4.143 4 C -0.105 4.105 5 C 0.189 3.811 6 H -0.010 1.010 7 C -0.487 4.487 8 H 0.048 0.952 9 C 0.030 3.970 10 N -0.941 5.941 11 Si 0.926 3.074 12 H -0.272 1.272 13 H -0.305 1.305 14 H -0.254 1.254 15 N -0.664 5.664 16 C 0.117 3.883 17 C -0.097 4.097 18 C -0.130 4.130 19 C -0.213 4.213 20 S 0.098 5.902 21 C -0.222 4.222 22 H 0.069 0.931 23 H 0.013 0.987 24 H 0.030 0.970 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.146 0.854 36 H 0.186 0.814 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.945 -1.005 -9.177 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.085 4.085 3 C -0.200 4.200 4 C -0.143 4.143 5 C 0.079 3.921 6 H 0.008 0.992 7 C -0.526 4.526 8 H 0.066 0.934 9 C -0.167 4.167 10 N -0.581 5.581 11 Si 0.755 3.245 12 H -0.198 1.198 13 H -0.234 1.234 14 H -0.179 1.179 15 N -0.295 5.295 16 C -0.015 4.015 17 C -0.110 4.110 18 C -0.160 4.160 19 C -0.348 4.348 20 S 0.361 5.639 21 C -0.359 4.359 22 H 0.087 0.913 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.163 0.837 36 H 0.204 0.796 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 15.157 -1.553 -10.379 18.435 hybrid contribution -0.650 0.693 2.640 2.806 sum 14.506 -0.860 -7.739 16.464 Atomic orbital electron populations 1.21933 0.96438 1.02126 0.97784 1.20719 0.94874 0.94639 0.98261 1.21884 1.00944 0.96309 1.00902 1.21853 0.98287 0.97007 0.97171 1.19418 0.93485 0.92078 0.87108 0.99230 1.21018 0.91120 1.37485 1.02957 0.93367 1.25370 0.94956 0.96471 0.99945 1.69996 1.08266 1.49246 1.30629 0.86216 0.79644 0.79636 0.78983 1.19842 1.23361 1.17875 1.60459 1.01567 1.37290 1.30163 1.20604 0.90824 0.98306 0.91754 1.18950 1.01051 0.92944 0.98023 1.20187 1.00678 1.01461 0.93671 1.25864 1.08769 0.97257 1.02896 1.84001 1.57359 1.08774 1.13764 1.25652 1.09057 1.01012 1.00141 0.91268 0.96778 0.95101 0.90045 0.91896 0.92176 0.94564 0.92904 0.95386 0.92944 0.84749 0.90465 0.95380 0.83683 0.79629 0.81725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 7.75 71.98 0.56 -5.01 16 2 C -0.07 -2.54 2.79 -10.79 -0.03 -2.57 16 3 C -0.14 -4.52 9.17 71.98 0.66 -3.85 16 4 C -0.11 -4.32 4.19 30.59 0.13 -4.19 16 5 C 0.19 8.30 1.89 44.17 0.08 8.38 16 6 H -0.01 -0.45 6.89 -2.38 -0.02 -0.47 16 7 C -0.49 -25.68 5.73 25.60 0.15 -25.53 16 8 H 0.05 2.82 7.39 -2.91 -0.02 2.80 16 9 C 0.03 1.69 4.32 84.66 0.37 2.05 16 10 N -0.94 -56.61 13.96 21.45 0.30 -56.31 16 11 Si 0.93 44.61 24.19 68.60 1.66 46.27 16 12 H -0.27 -12.79 6.82 99.48 0.68 -12.11 16 13 H -0.31 -14.89 7.11 99.48 0.71 -14.19 16 14 H -0.25 -11.52 6.53 99.48 0.65 -10.88 16 15 N -0.66 -24.92 5.11 -499.47 -2.55 -27.48 16 16 C 0.12 3.64 5.70 85.56 0.49 4.13 16 17 C -0.10 -2.65 5.36 -20.92 -0.11 -2.77 16 18 C -0.13 -3.17 9.98 21.22 0.21 -2.96 16 19 C -0.21 -4.40 11.23 66.72 0.75 -3.65 16 20 S 0.10 2.06 23.34 -56.49 -1.32 0.74 16 21 C -0.22 -5.61 10.98 66.72 0.73 -4.87 16 22 H 0.07 3.49 5.10 -2.39 -0.01 3.48 16 23 H 0.01 0.65 7.12 -2.39 -0.02 0.63 16 24 H 0.03 1.21 8.11 -2.38 -0.02 1.19 16 25 H 0.08 3.09 7.21 -2.38 -0.02 3.07 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.91 7.62 -2.39 -0.02 1.89 16 30 H 0.03 1.25 3.16 -2.38 -0.01 1.24 16 31 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 32 H 0.33 13.15 8.24 -89.70 -0.74 12.41 16 33 H 0.08 2.33 7.53 -2.39 -0.02 2.32 16 34 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 35 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.19 2.75 8.06 -2.91 -0.02 2.72 16 37 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -58.99 299.55 2.30 -56.69 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.23 Total: 20.93 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 3.98 Total: -40.85 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -2.25 Total: -83.79 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.66 Total: 46.27 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.74 kcal Total: -58.99 2.30 -56.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389893031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.486 kcal (2) G-P(sol) polarization free energy of solvation -58.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds