Wall clock time and date at job start Mon Mar 30 2020 07:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46933 * 2 1 4 4 C 1.53000 * 109.47265 * 120.00070 * 2 1 3 5 5 C 1.52995 * 109.47089 * 65.81191 * 4 2 1 6 6 H 1.09002 * 109.47049 * 302.61959 * 5 4 2 7 7 C 1.50698 * 109.46752 * 182.62511 * 5 4 2 8 8 H 1.08007 * 119.99683 * 239.99174 * 7 5 4 9 9 C 1.37874 * 120.00537 * 60.00116 * 7 5 4 10 10 N 1.31520 * 119.99867 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 120.00358 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47239 * 89.99451 * 11 9 7 13 13 H 1.48497 * 109.47323 * 209.99481 * 11 9 7 14 14 H 1.48503 * 109.46948 * 329.99561 * 11 9 7 15 15 N 1.46889 * 109.47511 * 62.62320 * 5 4 2 16 16 C 1.46899 * 111.00142 * 205.89277 * 15 5 4 17 17 C 1.50709 * 109.47245 * 174.83137 * 16 15 5 18 18 C 1.38417 * 122.53568 * 269.99925 * 17 16 15 19 19 C 1.33395 * 114.91709 * 180.02562 * 18 17 16 20 20 S 1.75877 * 109.59309 * 359.75369 * 19 18 17 21 21 C 1.33390 * 122.53599 * 90.02046 * 17 16 15 22 22 H 1.09003 * 109.47246 * 299.99716 * 1 2 3 23 23 H 1.08996 * 109.47077 * 60.00029 * 1 2 3 24 24 H 1.09006 * 109.46692 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47246 * 240.00284 * 2 1 3 26 26 H 1.08995 * 109.47144 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46763 * 300.00423 * 3 2 1 28 28 H 1.09002 * 109.47029 * 59.99544 * 3 2 1 29 29 H 1.08997 * 109.46895 * 305.80817 * 4 2 1 30 30 H 1.08999 * 109.46678 * 185.81445 * 4 2 1 31 31 H 0.96998 * 120.00125 * 180.02562 * 10 9 7 32 32 H 1.00898 * 111.00603 * 81.93577 * 15 5 4 33 33 H 1.08993 * 109.47620 * 54.83068 * 16 15 5 34 34 H 1.08997 * 109.46749 * 294.82720 * 16 15 5 35 35 H 1.07999 * 122.54616 * 359.97438 * 18 17 16 36 36 H 1.08000 * 125.19721 * 180.02562 * 19 18 17 37 37 H 1.07992 * 125.20544 * 359.95879 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6529 -2.1997 1.1783 6 1 0.5710 -2.2875 1.0779 7 6 2.0986 -2.8966 2.4379 8 1 2.7962 -3.7193 2.3819 9 6 1.6159 -2.4842 3.6618 10 7 0.7667 -1.4822 3.7300 11 14 2.1691 -3.3476 5.2232 12 1 3.3832 -2.6784 5.7553 13 1 1.0845 -3.2830 6.2354 14 1 2.4793 -4.7679 4.9200 15 7 2.3044 -2.8215 0.0179 16 6 1.5408 -3.9841 -0.4543 17 6 2.1673 -4.5176 -1.7170 18 6 1.7968 -4.0766 -2.9756 19 6 2.4491 -4.6517 -3.9872 20 16 3.6078 -5.8148 -3.3564 21 6 3.1204 -5.4507 -1.7061 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.5943 -0.2710 2.1361 30 1 3.1251 -0.6319 1.3027 31 1 0.4274 -1.1918 4.5911 32 1 3.2568 -3.0770 0.2317 33 1 0.5124 -3.6854 -0.6572 34 1 1.5495 -4.7598 0.3114 35 1 1.0367 -3.3246 -3.1274 36 1 2.2929 -4.4331 -5.0332 37 1 3.5329 -5.9090 -0.8195 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389893032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:49 Heat of formation + Delta-G solvation = 12.962120 kcal Electronic energy + Delta-G solvation = -16765.918894 eV Core-core repulsion = 14248.067784 eV Total energy + Delta-G solvation = -2517.851110 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.15203 -36.45987 -33.76471 -32.36438 -29.73168 -27.75896 -26.34918 -24.93541 -24.80073 -22.09140 -20.58280 -18.67353 -18.35036 -17.39274 -16.50767 -15.06103 -14.81075 -14.33810 -13.83302 -13.53999 -13.11686 -12.86516 -12.66199 -12.50212 -12.31155 -11.87548 -11.58788 -11.44365 -11.21179 -11.03150 -10.91527 -10.71130 -10.54123 -10.38688 -10.07143 -10.02386 -9.51600 -9.32738 -8.94458 -8.55333 -8.35184 -8.13350 -7.23362 -5.99894 -4.12611 1.26648 1.90440 2.21239 3.03928 3.25933 3.33430 3.35622 4.38818 5.14897 5.24382 5.37735 5.60544 5.72775 5.86974 5.90215 5.91889 5.98565 6.16099 6.31392 6.35352 6.39884 6.58546 6.61650 6.69957 6.74076 6.88345 6.99861 7.07316 7.16152 7.22144 7.49663 7.61581 7.79117 8.10919 8.15449 8.33823 8.65354 8.99792 9.54756 10.99671 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.006565 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.274038 B = 4263.963012 C = 5515.194397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.092 4.092 5 C 0.214 3.786 6 H 0.037 0.963 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.069 3.931 10 N -0.882 5.882 11 Si 0.886 3.114 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.277 1.277 15 N -0.682 5.682 16 C 0.121 3.879 17 C -0.081 4.081 18 C -0.109 4.109 19 C -0.221 4.221 20 S 0.058 5.942 21 C -0.209 4.209 22 H 0.048 0.952 23 H 0.029 0.971 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.328 0.672 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -3.222 -11.374 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.131 4.131 5 C 0.106 3.894 6 H 0.055 0.945 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.134 4.134 10 N -0.520 5.520 11 Si 0.715 3.285 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.202 1.202 15 N -0.311 5.311 16 C -0.011 4.011 17 C -0.093 4.093 18 C -0.140 4.140 19 C -0.356 4.356 20 S 0.320 5.680 21 C -0.344 4.344 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.620 -3.652 -12.357 13.149 hybrid contribution -0.463 -0.141 2.321 2.371 sum 2.157 -3.794 -10.035 10.943 Atomic orbital electron populations 1.21731 0.96665 1.01207 0.99418 1.21100 0.94800 0.94198 1.00972 1.21845 1.00117 0.97965 1.00038 1.21588 0.98165 0.96728 0.96595 1.19207 0.94512 0.90941 0.84739 0.94475 1.21866 1.27355 1.16820 0.92571 0.92985 1.24906 0.94758 0.94889 0.98817 1.69877 1.30871 1.26325 1.24954 0.86691 0.78374 0.80014 0.83466 1.20685 1.21221 1.20160 1.60902 1.05243 1.26448 1.38504 1.20476 0.96929 0.93192 0.90515 1.19215 0.97368 0.96186 0.96560 1.20138 1.01650 1.00983 0.91247 1.25474 1.03181 1.04057 1.02847 1.84023 1.40980 1.42640 1.00371 1.25441 1.04214 1.05509 0.99284 0.93310 0.95170 0.92821 0.91383 0.93712 0.94425 0.93499 0.89063 0.95216 0.92924 0.85613 0.91196 0.94543 0.84301 0.82388 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.97 37.16 0.33 -2.19 16 2 C -0.09 -1.80 2.85 -90.62 -0.26 -2.06 16 3 C -0.14 -2.46 9.19 37.16 0.34 -2.12 16 4 C -0.09 -2.12 4.18 -26.73 -0.11 -2.23 16 5 C 0.21 5.04 1.83 -68.87 -0.13 4.92 16 6 H 0.04 0.96 6.04 -51.93 -0.31 0.65 16 7 C -0.55 -14.34 8.47 -34.44 -0.29 -14.63 16 8 H 0.05 1.36 7.73 -52.48 -0.41 0.96 16 9 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 10 N -0.88 -24.25 11.30 55.43 0.63 -23.63 16 11 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 N -0.68 -13.83 5.46 -109.23 -0.60 -14.42 16 16 C 0.12 2.22 5.76 -4.97 -0.03 2.19 16 17 C -0.08 -1.28 5.36 -106.25 -0.57 -1.85 16 18 C -0.11 -1.57 9.98 -41.21 -0.41 -1.98 16 19 C -0.22 -2.79 11.23 29.04 0.33 -2.46 16 20 S 0.06 0.73 23.34 -107.50 -2.51 -1.78 16 21 C -0.21 -3.06 10.98 29.04 0.32 -2.74 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 1.07 6.54 -51.93 -0.34 0.73 16 25 H 0.07 1.35 7.52 -51.93 -0.39 0.96 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.09 2.36 6.00 -51.93 -0.31 2.04 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.33 6.75 8.45 -39.29 -0.33 6.42 16 33 H 0.07 1.29 7.91 -51.93 -0.41 0.88 16 34 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 314.65 15.07 4.74 4.74 Total: -1.00 -26.43 314.65 -9.19 -35.63 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.86 Total: 7.04 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -0.57 Total: -23.42 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.03 Total: -38.05 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.43 -9.19 -35.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389893032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.589 kcal (2) G-P(sol) polarization free energy of solvation -26.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds