Wall clock time and date at job start Mon Mar 30 2020 07:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46933 * 2 1 4 4 C 1.53000 * 109.47265 * 120.00070 * 2 1 3 5 5 C 1.52995 * 109.47089 * 65.81191 * 4 2 1 6 6 H 1.09002 * 109.47049 * 302.61959 * 5 4 2 7 7 C 1.50698 * 109.46752 * 182.62511 * 5 4 2 8 8 H 1.08007 * 119.99683 * 239.99174 * 7 5 4 9 9 C 1.37874 * 120.00537 * 60.00116 * 7 5 4 10 10 N 1.31520 * 119.99867 * 359.97438 * 9 7 5 11 11 Si 1.86799 * 120.00358 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47239 * 89.99451 * 11 9 7 13 13 H 1.48497 * 109.47323 * 209.99481 * 11 9 7 14 14 H 1.48503 * 109.46948 * 329.99561 * 11 9 7 15 15 N 1.46889 * 109.47511 * 62.62320 * 5 4 2 16 16 C 1.46899 * 111.00142 * 205.89277 * 15 5 4 17 17 C 1.50709 * 109.47245 * 174.83137 * 16 15 5 18 18 C 1.38417 * 122.53568 * 269.99925 * 17 16 15 19 19 C 1.33395 * 114.91709 * 180.02562 * 18 17 16 20 20 S 1.75877 * 109.59309 * 359.75369 * 19 18 17 21 21 C 1.33390 * 122.53599 * 90.02046 * 17 16 15 22 22 H 1.09003 * 109.47246 * 299.99716 * 1 2 3 23 23 H 1.08996 * 109.47077 * 60.00029 * 1 2 3 24 24 H 1.09006 * 109.46692 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47246 * 240.00284 * 2 1 3 26 26 H 1.08995 * 109.47144 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46763 * 300.00423 * 3 2 1 28 28 H 1.09002 * 109.47029 * 59.99544 * 3 2 1 29 29 H 1.08997 * 109.46895 * 305.80817 * 4 2 1 30 30 H 1.08999 * 109.46678 * 185.81445 * 4 2 1 31 31 H 0.96998 * 120.00125 * 180.02562 * 10 9 7 32 32 H 1.00898 * 111.00603 * 81.93577 * 15 5 4 33 33 H 1.08993 * 109.47620 * 54.83068 * 16 15 5 34 34 H 1.08997 * 109.46749 * 294.82720 * 16 15 5 35 35 H 1.07999 * 122.54616 * 359.97438 * 18 17 16 36 36 H 1.08000 * 125.19721 * 180.02562 * 19 18 17 37 37 H 1.07992 * 125.20544 * 359.95879 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6529 -2.1997 1.1783 6 1 0.5710 -2.2875 1.0779 7 6 2.0986 -2.8966 2.4379 8 1 2.7962 -3.7193 2.3819 9 6 1.6159 -2.4842 3.6618 10 7 0.7667 -1.4822 3.7300 11 14 2.1691 -3.3476 5.2232 12 1 3.3832 -2.6784 5.7553 13 1 1.0845 -3.2830 6.2354 14 1 2.4793 -4.7679 4.9200 15 7 2.3044 -2.8215 0.0179 16 6 1.5408 -3.9841 -0.4543 17 6 2.1673 -4.5176 -1.7170 18 6 1.7968 -4.0766 -2.9756 19 6 2.4491 -4.6517 -3.9872 20 16 3.6078 -5.8148 -3.3564 21 6 3.1204 -5.4507 -1.7061 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.5943 -0.2710 2.1361 30 1 3.1251 -0.6319 1.3027 31 1 0.4274 -1.1918 4.5911 32 1 3.2568 -3.0770 0.2317 33 1 0.5124 -3.6854 -0.6572 34 1 1.5495 -4.7598 0.3114 35 1 1.0367 -3.3246 -3.1274 36 1 2.2929 -4.4331 -5.0332 37 1 3.5329 -5.9090 -0.8195 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389893032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:47 Heat of formation + Delta-G solvation = -0.702131 kcal Electronic energy + Delta-G solvation = -16766.511420 eV Core-core repulsion = 14248.067784 eV Total energy + Delta-G solvation = -2518.443636 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.44786 -38.08905 -35.37229 -34.27977 -31.11599 -29.28309 -27.84416 -26.89919 -26.24654 -23.33135 -22.37154 -20.30887 -19.57938 -18.82352 -18.19382 -16.74820 -16.32279 -15.92406 -15.47810 -15.12859 -14.71535 -14.36158 -13.96572 -13.84246 -13.55005 -13.30597 -13.17058 -12.95335 -12.91002 -12.81327 -12.54617 -12.31695 -12.17467 -11.99488 -11.83748 -11.50100 -11.29739 -11.02936 -10.79459 -10.37754 -9.65317 -9.23218 -8.97250 -8.02612 -6.24022 0.17271 0.85183 1.13451 1.37148 1.39455 1.47211 1.87275 2.40709 3.16601 3.90111 4.07848 4.25700 4.36157 4.39040 4.43372 4.58916 4.66945 4.81382 4.90570 4.92960 4.99510 5.09121 5.17594 5.20736 5.26744 5.35747 5.46649 5.51621 5.55394 5.62663 5.71237 5.80439 5.89043 6.18755 6.25238 6.42211 6.82711 7.03989 7.46572 8.92821 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.006565 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.274038 B = 4263.963012 C = 5515.194397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.084 4.084 5 C 0.222 3.778 6 H 0.011 0.989 7 C -0.562 4.562 8 H 0.046 0.954 9 C 0.024 3.976 10 N -0.905 5.905 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.274 1.274 15 N -0.671 5.671 16 C 0.128 3.872 17 C -0.096 4.096 18 C -0.132 4.132 19 C -0.209 4.209 20 S 0.105 5.895 21 C -0.225 4.225 22 H 0.034 0.966 23 H 0.060 0.940 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.063 0.937 34 H 0.018 0.982 35 H 0.143 0.857 36 H 0.190 0.810 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -3.456 -13.120 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C -0.194 4.194 4 C -0.123 4.123 5 C 0.113 3.887 6 H 0.029 0.971 7 C -0.601 4.601 8 H 0.064 0.936 9 C -0.177 4.177 10 N -0.543 5.543 11 Si 0.771 3.229 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.199 1.199 15 N -0.299 5.299 16 C -0.004 4.004 17 C -0.109 4.109 18 C -0.162 4.162 19 C -0.345 4.345 20 S 0.367 5.633 21 C -0.361 4.361 22 H 0.053 0.947 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.161 0.839 36 H 0.207 0.793 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.395 -3.895 -14.117 15.033 hybrid contribution -0.680 -0.137 2.797 2.882 sum 2.715 -4.032 -11.320 12.320 Atomic orbital electron populations 1.21648 0.96211 1.00266 1.00183 1.21007 0.95114 0.95468 0.98893 1.21777 1.00389 0.96184 1.01056 1.21407 0.97093 0.96536 0.97233 1.18980 0.92990 0.91646 0.85050 0.97144 1.22190 1.27172 1.16825 0.93948 0.93582 1.25580 0.94976 0.95572 1.01521 1.70002 1.31638 1.27255 1.25438 0.85776 0.77959 0.79005 0.80163 1.20308 1.20939 1.19937 1.60850 1.05020 1.27448 1.36628 1.20352 0.96721 0.91835 0.91510 1.19022 0.98470 0.97430 0.95953 1.20159 1.02864 1.02172 0.90990 1.25871 1.01851 1.02741 1.03987 1.83884 1.39899 1.41645 0.97822 1.25606 1.04014 1.05254 1.01225 0.94706 0.92094 0.94648 0.91291 0.93291 0.91764 0.94086 0.92036 0.96332 0.93000 0.85776 0.91876 0.96406 0.83921 0.79324 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.97 71.98 0.65 -4.09 16 2 C -0.09 -3.34 2.85 -10.79 -0.03 -3.37 16 3 C -0.14 -4.51 9.19 71.98 0.66 -3.85 16 4 C -0.08 -3.95 4.18 30.59 0.13 -3.82 16 5 C 0.22 10.81 1.83 44.17 0.08 10.90 16 6 H 0.01 0.58 6.04 -2.39 -0.01 0.56 16 7 C -0.56 -30.25 8.47 25.60 0.22 -30.04 16 8 H 0.05 2.47 7.73 -2.91 -0.02 2.45 16 9 C 0.02 1.31 5.30 84.65 0.45 1.75 16 10 N -0.90 -50.99 11.30 21.45 0.24 -50.75 16 11 Si 0.94 43.38 29.54 68.60 2.03 45.40 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 N -0.67 -27.80 5.46 -499.49 -2.73 -30.53 16 16 C 0.13 4.81 5.76 85.56 0.49 5.31 16 17 C -0.10 -3.01 5.36 -20.92 -0.11 -3.12 16 18 C -0.13 -3.59 9.98 21.22 0.21 -3.38 16 19 C -0.21 -4.67 11.23 66.72 0.75 -3.92 16 20 S 0.10 2.36 23.34 -56.49 -1.32 1.04 16 21 C -0.22 -6.39 10.98 66.72 0.73 -5.66 16 22 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.03 1.43 6.54 -2.38 -0.02 1.42 16 25 H 0.07 2.67 7.52 -2.39 -0.02 2.65 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 3.28 6.00 -2.39 -0.01 3.26 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.33 13.69 8.45 -89.70 -0.76 12.93 16 33 H 0.06 2.42 7.91 -2.39 -0.02 2.40 16 34 H 0.02 0.72 8.09 -2.39 -0.02 0.71 16 35 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.16 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -57.05 314.65 2.73 -54.32 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.28 Total: 23.81 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 4.22 Total: -43.29 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.48 Total: -81.28 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.32 Total: 1.04 kcal Total: -57.05 2.73 -54.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389893032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.614 kcal (2) G-P(sol) polarization free energy of solvation -57.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds