Wall clock time and date at job start Mon Mar 30 2020 07:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46801 * 2 1 4 4 C 1.38424 * 122.54433 * 265.16865 * 3 2 1 5 5 C 1.33388 * 114.92217 * 180.27229 * 4 3 2 6 6 S 1.75881 * 109.59202 * 359.77615 * 5 4 3 7 7 C 1.33391 * 122.53440 * 85.00283 * 3 2 1 8 8 C 1.50693 * 125.20563 * 0.02562 * 7 3 2 9 9 N 1.46908 * 109.47347 * 89.71730 * 8 7 3 10 10 C 1.46894 * 110.99955 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47779 * 324.99869 * 10 9 8 12 12 C 1.52998 * 109.47018 * 85.00186 * 10 9 8 13 13 C 1.53002 * 109.47229 * 204.99899 * 10 9 8 14 14 C 1.50706 * 109.47153 * 64.99752 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 H 1.09007 * 109.46769 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47052 * 299.99349 * 1 2 3 24 24 H 1.08994 * 109.47201 * 59.99724 * 1 2 3 25 25 H 1.08999 * 109.47052 * 240.00651 * 2 1 3 26 26 H 1.09003 * 109.47486 * 120.00311 * 2 1 3 27 27 H 1.07994 * 122.53599 * 0.05083 * 4 3 2 28 28 H 1.08001 * 125.19981 * 179.75545 * 5 4 3 29 29 H 1.09002 * 109.47128 * 329.71840 * 8 7 3 30 30 H 1.09003 * 109.47028 * 209.71436 * 8 7 3 31 31 H 1.00893 * 111.00020 * 303.95580 * 9 8 7 32 32 H 1.09001 * 109.46923 * 299.99707 * 12 10 9 33 33 H 1.08995 * 109.47190 * 60.00037 * 12 10 9 34 34 H 1.09007 * 109.46878 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.47178 * 305.00542 * 13 10 9 36 36 H 1.08993 * 109.47411 * 185.00225 * 13 10 9 37 37 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3731 2.0902 -1.1627 5 6 2.8051 3.3398 -0.9860 6 16 2.7894 3.7322 0.7284 7 6 2.1790 2.1299 1.1203 8 6 1.8747 1.6320 2.5097 9 7 3.0750 1.0048 3.0789 10 6 2.8154 0.5070 4.4364 11 1 2.1236 1.1792 4.9439 12 6 2.2016 -0.8923 4.3577 13 6 4.1300 0.4441 5.2167 14 6 4.6725 1.8381 5.4001 15 1 4.1333 2.6842 5.0005 16 6 5.8571 2.0332 6.0780 17 7 6.5109 1.0032 6.5693 18 14 6.5292 3.7611 6.3061 19 1 7.8021 3.7006 7.0685 20 1 6.7770 4.3752 4.9768 21 1 5.5426 4.5812 7.0540 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.2985 1.6340 -2.1387 28 1 3.1170 4.0081 -1.7749 29 1 1.0686 0.8996 2.4648 30 1 1.5702 2.4696 3.1372 31 1 3.4150 0.2663 2.4815 32 1 1.2650 -0.8474 3.8019 33 1 2.8934 -1.5645 3.8504 34 1 2.0094 -1.2618 5.3651 35 1 4.8522 -0.1569 4.6640 36 1 3.9521 -0.0080 6.1924 37 1 6.1619 0.1059 6.4511 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389985496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:47 Heat of formation + Delta-G solvation = 8.454815 kcal Electronic energy + Delta-G solvation = -16593.219450 eV Core-core repulsion = 14075.172889 eV Total energy + Delta-G solvation = -2518.046561 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.77289 -36.62723 -33.23984 -32.66788 -31.25444 -28.20776 -26.90579 -25.44009 -23.21156 -22.55767 -21.94847 -20.01626 -18.17114 -17.23592 -16.51447 -15.40126 -15.05650 -14.38550 -14.03937 -13.74539 -13.64821 -13.37285 -13.01375 -12.89324 -12.53581 -12.12406 -12.01378 -11.73379 -11.53762 -11.31857 -11.20315 -11.02543 -10.90017 -10.67476 -10.39969 -10.26227 -10.00017 -9.59636 -8.50534 -8.40452 -8.16873 -8.15547 -7.61592 -6.17036 -3.81710 1.15892 1.85488 2.24639 2.79712 3.53834 3.57508 3.75062 4.69047 4.76494 4.86622 5.02660 5.14075 5.31314 5.32790 5.40901 5.59665 5.61535 5.66507 5.72527 5.79529 5.80973 5.87661 5.87912 5.94460 6.15131 6.21408 6.33792 6.50623 6.54243 6.67750 6.87411 7.33232 7.43532 7.84472 8.02682 8.44656 8.70011 9.08768 9.86636 11.23508 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.006352 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.430936 B = 4406.758295 C = 5448.844455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C -0.114 4.114 4 C -0.128 4.128 5 C -0.229 4.229 6 S 0.126 5.874 7 C -0.154 4.154 8 C 0.127 3.873 9 N -0.656 5.656 10 C 0.096 3.904 11 H 0.066 0.934 12 C -0.182 4.182 13 C 0.021 3.979 14 C -0.568 4.568 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 1.066 2.934 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.291 1.291 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.132 0.868 28 H 0.159 0.841 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.333 0.667 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.007 0.993 36 H 0.008 0.992 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 0.183 -14.707 18.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.127 4.127 4 C -0.160 4.160 5 C -0.365 4.365 6 S 0.392 5.608 7 C -0.273 4.273 8 C -0.004 4.004 9 N -0.286 5.286 10 C -0.013 4.013 11 H 0.084 0.916 12 C -0.241 4.241 13 C -0.017 4.017 14 C -0.607 4.607 15 H 0.069 0.931 16 C -0.194 4.194 17 N -0.562 5.562 18 Si 0.895 3.105 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.218 1.218 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.176 0.824 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.075 2.994 -12.967 16.692 hybrid contribution -2.085 -2.836 -1.848 3.976 sum -12.160 0.158 -14.815 19.167 Atomic orbital electron populations 1.21736 0.95099 1.01353 1.02057 1.20204 0.95720 0.91782 1.02493 1.18757 1.04460 0.97648 0.91840 1.19915 1.02812 0.94350 0.98877 1.25570 1.10105 1.01064 0.99799 1.84478 1.63368 1.13517 0.99468 1.24328 1.06698 0.97491 0.98749 1.20406 0.92680 0.98499 0.88820 1.60566 1.28856 1.36136 1.03053 1.21653 0.99252 0.91585 0.88804 0.91579 1.22585 0.99784 1.00018 1.01678 1.19226 0.91026 0.98178 0.93229 1.21915 1.09123 0.92502 1.37145 0.93094 1.25747 0.94437 1.05076 0.94156 1.70790 1.41006 0.99687 1.44701 0.83586 0.76037 0.74596 0.76253 1.21113 1.21534 1.21754 0.92647 0.92619 0.92696 0.91234 0.91345 0.84976 0.82362 0.94136 0.90484 0.84946 0.94146 0.93033 0.92424 0.97464 0.97414 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.84 37.16 0.37 -1.06 16 2 C -0.06 -0.70 5.57 -27.88 -0.16 -0.85 16 3 C -0.11 -1.52 5.06 -106.25 -0.54 -2.05 16 4 C -0.13 -1.58 9.96 -41.21 -0.41 -1.99 16 5 C -0.23 -2.84 11.23 29.04 0.33 -2.51 16 6 S 0.13 1.84 23.33 -107.50 -2.51 -0.66 16 7 C -0.15 -2.33 6.02 -36.01 -0.22 -2.54 16 8 C 0.13 2.02 5.37 -4.98 -0.03 1.99 16 9 N -0.66 -12.47 5.95 -107.99 -0.64 -13.11 16 10 C 0.10 1.95 2.53 -67.72 -0.17 1.78 16 11 H 0.07 1.37 7.80 -51.93 -0.40 0.97 16 12 C -0.18 -2.99 9.16 37.16 0.34 -2.65 16 13 C 0.02 0.53 3.97 -27.88 -0.11 0.42 16 14 C -0.57 -16.41 8.84 -34.44 -0.30 -16.72 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.01 0.23 5.46 -17.82 -0.10 0.13 16 17 N -0.92 -29.08 13.65 55.43 0.76 -28.32 16 18 Si 1.07 26.46 29.90 -169.99 -5.08 21.38 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 23 H 0.05 0.59 7.29 -51.93 -0.38 0.21 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 26 H 0.07 0.82 7.28 -51.93 -0.38 0.44 16 27 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.04 0.58 5.82 -51.93 -0.30 0.28 16 30 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 31 H 0.33 6.04 8.22 -39.30 -0.32 5.72 16 32 H 0.04 0.57 7.45 -51.93 -0.39 0.19 16 33 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 36 H 0.01 0.21 8.00 -51.93 -0.42 -0.21 16 37 H 0.26 8.29 7.22 -40.82 -0.29 8.00 16 LS Contribution 316.83 15.07 4.77 4.77 Total: -1.00 -31.43 316.83 -9.58 -41.00 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.88 Total: 0.99 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -1.00 Total: -26.06 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.11 Total: -41.43 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.08 Total: 21.38 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.51 Total: -0.66 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.43 -9.58 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389985496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.458 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds