Wall clock time and date at job start Mon Mar 30 2020 07:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46801 * 2 1 4 4 C 1.38424 * 122.54433 * 265.16865 * 3 2 1 5 5 C 1.33388 * 114.92217 * 180.27229 * 4 3 2 6 6 S 1.75881 * 109.59202 * 359.77615 * 5 4 3 7 7 C 1.33391 * 122.53440 * 85.00283 * 3 2 1 8 8 C 1.50693 * 125.20563 * 0.02562 * 7 3 2 9 9 N 1.46908 * 109.47347 * 89.71730 * 8 7 3 10 10 C 1.46894 * 110.99955 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47779 * 324.99869 * 10 9 8 12 12 C 1.52998 * 109.47018 * 85.00186 * 10 9 8 13 13 C 1.53002 * 109.47229 * 204.99899 * 10 9 8 14 14 C 1.50706 * 109.47153 * 64.99752 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 H 1.09007 * 109.46769 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47052 * 299.99349 * 1 2 3 24 24 H 1.08994 * 109.47201 * 59.99724 * 1 2 3 25 25 H 1.08999 * 109.47052 * 240.00651 * 2 1 3 26 26 H 1.09003 * 109.47486 * 120.00311 * 2 1 3 27 27 H 1.07994 * 122.53599 * 0.05083 * 4 3 2 28 28 H 1.08001 * 125.19981 * 179.75545 * 5 4 3 29 29 H 1.09002 * 109.47128 * 329.71840 * 8 7 3 30 30 H 1.09003 * 109.47028 * 209.71436 * 8 7 3 31 31 H 1.00893 * 111.00020 * 303.95580 * 9 8 7 32 32 H 1.09001 * 109.46923 * 299.99707 * 12 10 9 33 33 H 1.08995 * 109.47190 * 60.00037 * 12 10 9 34 34 H 1.09007 * 109.46878 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.47178 * 305.00542 * 13 10 9 36 36 H 1.08993 * 109.47411 * 185.00225 * 13 10 9 37 37 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3731 2.0902 -1.1627 5 6 2.8051 3.3398 -0.9860 6 16 2.7894 3.7322 0.7284 7 6 2.1790 2.1299 1.1203 8 6 1.8747 1.6320 2.5097 9 7 3.0750 1.0048 3.0789 10 6 2.8154 0.5070 4.4364 11 1 2.1236 1.1792 4.9439 12 6 2.2016 -0.8923 4.3577 13 6 4.1300 0.4441 5.2167 14 6 4.6725 1.8381 5.4001 15 1 4.1333 2.6842 5.0005 16 6 5.8571 2.0332 6.0780 17 7 6.5109 1.0032 6.5693 18 14 6.5292 3.7611 6.3061 19 1 7.8021 3.7006 7.0685 20 1 6.7770 4.3752 4.9768 21 1 5.5426 4.5812 7.0540 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.2985 1.6340 -2.1387 28 1 3.1170 4.0081 -1.7749 29 1 1.0686 0.8996 2.4648 30 1 1.5702 2.4696 3.1372 31 1 3.4150 0.2663 2.4815 32 1 1.2650 -0.8474 3.8019 33 1 2.8934 -1.5645 3.8504 34 1 2.0094 -1.2618 5.3651 35 1 4.8522 -0.1569 4.6640 36 1 3.9521 -0.0080 6.1924 37 1 6.1619 0.1059 6.4511 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389985496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:47 Heat of formation + Delta-G solvation = -10.194383 kcal Electronic energy + Delta-G solvation = -16594.028140 eV Core-core repulsion = 14075.172889 eV Total energy + Delta-G solvation = -2518.855251 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.85206 -38.14300 -35.20683 -33.71299 -32.70598 -29.51228 -28.74705 -26.52856 -25.02476 -23.96912 -22.90538 -21.70149 -19.19600 -18.94421 -18.14470 -16.49670 -16.38052 -15.81025 -15.64798 -15.17902 -15.07352 -14.68100 -14.50164 -13.95738 -13.74891 -13.40067 -13.29176 -13.17743 -12.96492 -12.68275 -12.58831 -12.51422 -12.23789 -12.13267 -11.93773 -11.77620 -11.47072 -11.38132 -10.60233 -10.46353 -9.55868 -9.25889 -9.06350 -8.55750 -6.20651 0.11357 0.79653 1.21326 1.52149 1.61315 1.79973 1.80922 2.61662 3.24287 3.43067 3.90009 3.98961 4.09570 4.16677 4.31212 4.34601 4.45553 4.49083 4.51357 4.55623 4.77604 4.84333 4.87766 4.98555 5.06307 5.09763 5.12823 5.22306 5.24529 5.36892 5.45778 5.57519 5.67897 6.12613 6.27848 6.35022 6.57932 6.75680 7.55882 8.85360 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.006352 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.430936 B = 4406.758295 C = 5448.844455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.102 4.102 4 C -0.135 4.135 5 C -0.213 4.213 6 S 0.069 5.931 7 C -0.182 4.182 8 C 0.137 3.863 9 N -0.675 5.675 10 C 0.105 3.895 11 H 0.058 0.942 12 C -0.169 4.169 13 C 0.023 3.977 14 C -0.575 4.575 15 H 0.044 0.956 16 C -0.047 4.047 17 N -0.949 5.949 18 Si 1.111 2.889 19 H -0.285 1.285 20 H -0.276 1.276 21 H -0.271 1.271 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.163 0.837 28 H 0.186 0.814 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.336 0.664 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.057 0.943 35 H -0.014 1.014 36 H -0.010 1.010 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.126 0.238 -16.763 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C -0.116 4.116 4 C -0.165 4.165 5 C -0.349 4.349 6 S 0.335 5.665 7 C -0.300 4.300 8 C 0.007 3.993 9 N -0.306 5.306 10 C -0.004 4.004 11 H 0.076 0.924 12 C -0.228 4.228 13 C -0.015 4.015 14 C -0.613 4.613 15 H 0.063 0.937 16 C -0.242 4.242 17 N -0.588 5.588 18 Si 0.934 3.066 19 H -0.210 1.210 20 H -0.202 1.202 21 H -0.196 1.196 22 H 0.089 0.911 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.180 0.820 28 H 0.203 0.797 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.004 0.996 36 H 0.008 0.992 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.234 3.038 -15.035 19.013 hybrid contribution -1.760 -2.882 -1.301 3.619 sum -12.995 0.156 -16.336 20.875 Atomic orbital electron populations 1.21701 0.93860 1.02350 1.01901 1.20297 0.96711 0.90378 1.02967 1.19131 1.02466 0.98396 0.91588 1.20261 1.02267 0.94248 0.99772 1.25885 1.09006 1.01555 0.98412 1.84630 1.64706 1.14710 1.02498 1.24226 1.09272 0.97748 0.98708 1.20263 0.91834 0.98060 0.89137 1.60381 1.31158 1.36463 1.02619 1.21338 0.96073 0.93991 0.89020 0.92387 1.22419 1.00829 0.97226 1.02340 1.19155 0.93415 0.95974 0.92937 1.22254 1.08994 0.93806 1.36242 0.93740 1.27204 0.95205 1.08039 0.93782 1.70922 1.41764 0.99624 1.46528 0.82999 0.75882 0.70692 0.77021 1.21046 1.20175 1.19633 0.91089 0.93612 0.92032 0.89492 0.92165 0.82001 0.79673 0.92184 0.92038 0.84528 0.91219 0.92731 0.92342 0.99605 0.99229 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.84 71.98 0.71 -1.63 16 2 C -0.06 -1.25 5.57 29.85 0.17 -1.08 16 3 C -0.10 -2.49 5.06 -20.92 -0.11 -2.59 16 4 C -0.14 -2.90 9.96 21.22 0.21 -2.69 16 5 C -0.21 -4.77 11.23 66.72 0.75 -4.02 16 6 S 0.07 2.00 23.33 -56.49 -1.32 0.68 16 7 C -0.18 -5.32 6.02 24.59 0.15 -5.17 16 8 C 0.14 4.30 5.37 85.55 0.46 4.76 16 9 N -0.67 -25.60 5.95 -495.58 -2.95 -28.55 16 10 C 0.11 4.28 2.53 44.92 0.11 4.39 16 11 H 0.06 2.43 7.80 -2.39 -0.02 2.41 16 12 C -0.17 -5.35 9.16 71.98 0.66 -4.69 16 13 C 0.02 1.19 3.97 29.85 0.12 1.31 16 14 C -0.57 -33.84 8.84 25.60 0.23 -33.62 16 15 H 0.04 2.63 7.74 -2.91 -0.02 2.61 16 16 C -0.05 -2.82 5.46 84.65 0.46 -2.36 16 17 N -0.95 -61.02 13.65 21.45 0.29 -60.73 16 18 Si 1.11 53.45 29.90 68.60 2.05 55.50 16 19 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.04 0.85 7.29 -2.39 -0.02 0.83 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 25 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16 26 H 0.06 1.29 7.28 -2.39 -0.02 1.28 16 27 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.06 1.63 5.82 -2.39 -0.01 1.61 16 30 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 31 H 0.34 12.09 8.22 -89.70 -0.74 11.35 16 32 H 0.07 1.80 7.45 -2.39 -0.02 1.79 16 33 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 34 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 35 H -0.01 -0.81 8.01 -2.39 -0.02 -0.83 16 36 H -0.01 -0.58 8.00 -2.39 -0.02 -0.60 16 37 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 Total: -1.00 -68.61 316.83 2.40 -66.21 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.40 Total: 14.27 kcal Atomic # 6 Polarization: -51.30 SS G_CDS: 3.92 Total: -47.38 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -2.66 Total: -89.28 kcal Atomic # 14 Polarization: 53.45 SS G_CDS: 2.05 Total: 55.50 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.32 Total: 0.68 kcal Total: -68.61 2.40 -66.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389985496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.013 kcal (2) G-P(sol) polarization free energy of solvation -68.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds