Wall clock time and date at job start Mon Mar 30 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38285 * 119.92767 * 2 1 4 4 C 1.38653 * 120.00023 * 180.02562 * 3 2 1 5 5 N 1.40112 * 120.06565 * 179.97438 * 4 3 2 6 6 C 1.39329 * 119.87120 * 359.97438 * 4 3 2 7 7 O 1.36010 * 120.07048 * 179.97438 * 6 4 3 8 8 C 1.42894 * 117.00301 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47271 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47526 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47302 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00052 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99934 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00118 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99815 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46697 * 60.00472 * 15 13 11 17 17 H 1.48502 * 109.46632 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47319 * 299.99976 * 15 13 11 19 19 C 1.38475 * 119.86685 * 359.97438 * 6 4 3 20 20 C 1.38396 * 119.93495 * 179.72235 * 2 1 3 21 21 F 1.35098 * 119.93466 * 359.97438 * 20 2 1 22 22 H 1.08999 * 109.47015 * 90.00520 * 1 2 3 23 23 H 1.09000 * 109.46646 * 209.99673 * 1 2 3 24 24 H 1.09000 * 109.47248 * 330.00390 * 1 2 3 25 25 H 1.08001 * 120.00390 * 359.97438 * 3 2 1 26 26 H 0.97003 * 119.99986 * 359.97438 * 5 4 3 27 27 H 0.97001 * 119.99847 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.47327 * 299.99598 * 8 7 6 29 29 H 1.08992 * 109.47243 * 59.99807 * 8 7 6 30 30 H 1.09004 * 109.46984 * 299.99895 * 9 8 7 31 31 H 1.09005 * 109.47098 * 59.99455 * 9 8 7 32 32 H 1.09004 * 109.46913 * 299.99950 * 10 9 8 33 33 H 1.09000 * 109.46959 * 59.99847 * 10 9 8 34 34 H 0.96995 * 120.00174 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.00343 * 179.97438 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5835 1.2002 -0.0005 5 7 4.2839 2.4137 -0.0011 6 6 4.2790 -0.0071 -0.0005 7 8 5.6391 -0.0101 -0.0016 8 6 6.2850 -1.2847 -0.0009 9 6 7.8023 -1.0875 -0.0017 10 6 8.4940 -2.4522 -0.0003 11 6 9.9884 -2.2580 -0.0017 12 1 10.4034 -1.2609 -0.0037 13 6 10.8260 -3.3532 -0.0003 14 7 10.3207 -4.5675 0.0017 15 14 12.6784 -3.1124 -0.0026 16 1 13.0802 -2.3520 1.2080 17 1 13.3497 -4.4371 -0.0012 18 1 13.0778 -2.3569 -1.2170 19 6 3.5826 -1.2040 0.0005 20 6 2.1977 -1.1993 0.0058 21 9 1.5195 -2.3677 0.0120 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6559 2.1331 -0.0004 26 1 3.7988 3.2537 -0.0015 27 1 5.2539 2.4138 -0.0018 28 1 5.9917 -1.8403 0.8898 29 1 5.9903 -1.8419 -0.8901 30 1 8.0960 -0.5318 -0.8922 31 1 8.0967 -0.5304 0.8878 32 1 8.2002 -3.0076 0.8904 33 1 8.1996 -3.0096 -0.8896 34 1 10.9099 -5.3380 0.0031 35 1 4.1195 -2.1412 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390044657.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:55 Heat of formation + Delta-G solvation = -101.817743 kcal Electronic energy + Delta-G solvation = -17786.291099 eV Core-core repulsion = 14697.249585 eV Total energy + Delta-G solvation = -3089.041514 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.76680 -41.19711 -38.73814 -36.02761 -35.42000 -33.72045 -32.66398 -29.52859 -29.03032 -27.09171 -25.42295 -23.57935 -22.25011 -21.93163 -19.40642 -18.66534 -18.31744 -17.53246 -17.27587 -16.86262 -16.50990 -16.47187 -15.90055 -15.34543 -15.04161 -14.98933 -14.34825 -14.19265 -13.92948 -13.72067 -13.42311 -13.25183 -12.82076 -12.80684 -12.52140 -12.27310 -12.17233 -12.11833 -11.54997 -11.47155 -11.27310 -11.14108 -10.57512 -9.53469 -8.22708 -8.18093 -6.34225 0.23432 0.35795 1.40491 1.43616 1.51570 2.13772 2.41888 2.62774 2.96193 3.11070 3.40103 3.70354 3.89887 4.02403 4.06769 4.18899 4.40965 4.44245 4.59366 4.80833 4.83145 4.86027 4.90822 4.97277 5.05870 5.14907 5.21335 5.40553 5.46102 5.64019 5.79142 5.79797 6.14369 6.23221 6.62343 6.81465 7.03742 7.35251 8.89219 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.037403 B = 0.003736 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.425884 B = 7492.889706 C = 8210.261241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C -0.140 4.140 4 C 0.188 3.812 5 N -0.861 5.861 6 C 0.057 3.943 7 O -0.321 6.321 8 C 0.073 3.927 9 C -0.093 4.093 10 C 0.027 3.973 11 C -0.546 4.546 12 H 0.063 0.937 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.266 1.266 19 C -0.208 4.208 20 C 0.047 3.953 21 F -0.151 7.151 22 H 0.082 0.918 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.172 0.828 26 H 0.413 0.587 27 H 0.405 0.595 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.062 0.938 32 H -0.003 1.003 33 H -0.003 1.003 34 H 0.265 0.735 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.459 14.048 -0.026 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.163 4.163 4 C 0.082 3.918 5 N -0.403 5.403 6 C 0.008 3.992 7 O -0.235 6.235 8 C -0.002 4.002 9 C -0.130 4.130 10 C -0.010 4.010 11 C -0.584 4.584 12 H 0.081 0.919 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.228 4.228 20 C 0.025 3.975 21 F -0.130 7.130 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.189 0.811 26 H 0.244 0.756 27 H 0.234 0.766 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.073 0.927 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.311 13.961 -0.025 23.026 hybrid contribution 1.210 -0.867 -0.004 1.489 sum -17.100 13.094 -0.029 21.538 Atomic orbital electron populations 1.20738 0.88139 1.03989 1.03520 1.19893 0.98196 0.90563 1.01913 1.20456 0.89994 0.98801 1.07068 1.17357 0.91407 0.84779 0.98234 1.42310 1.09539 1.04008 1.84465 1.18446 0.82875 0.92850 1.04999 1.85951 1.15659 1.32550 1.89342 1.22816 0.93280 0.83089 1.00973 1.21404 0.90488 0.99071 1.02070 1.18919 0.94687 0.91975 0.95428 1.21608 0.92585 0.93151 1.51043 0.91868 1.25995 1.04443 0.94808 0.94559 1.70084 1.37193 0.98643 1.51354 0.85463 0.78673 0.77432 0.79270 1.19069 1.20847 1.19083 1.21060 0.93998 0.98503 1.09275 1.17187 0.88903 0.81620 1.09746 1.91412 1.80012 1.46923 1.94650 0.89943 0.91887 0.88738 0.81104 0.75641 0.76633 0.92413 0.92399 0.91930 0.91935 0.98447 0.98452 0.92653 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.83 71.24 0.70 -0.89 16 2 C -0.10 -2.23 5.89 -19.81 -0.12 -2.35 16 3 C -0.14 -2.62 9.54 22.38 0.21 -2.41 16 4 C 0.19 4.37 6.77 38.18 0.26 4.63 16 5 N -0.86 -15.21 9.10 -51.00 -0.46 -15.67 16 6 C 0.06 1.70 6.70 22.59 0.15 1.85 16 7 O -0.32 -10.55 9.38 -93.66 -0.88 -11.43 16 8 C 0.07 2.64 4.74 71.98 0.34 2.98 16 9 C -0.09 -3.86 5.52 30.59 0.17 -3.69 16 10 C 0.03 1.42 4.97 29.85 0.15 1.57 16 11 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 12 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 13 C 0.00 0.00 5.46 84.65 0.46 0.46 16 14 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 15 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 C -0.21 -6.32 9.01 22.39 0.20 -6.12 16 20 C 0.05 1.30 7.24 22.37 0.16 1.46 16 21 F -0.15 -4.40 16.45 44.97 0.74 -3.66 16 22 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.02 7.62 -2.39 -0.02 1.00 16 24 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 25 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 26 H 0.41 4.46 8.85 -92.71 -0.82 3.64 16 27 H 0.40 7.76 8.19 -92.71 -0.76 7.00 16 28 H 0.06 2.06 7.66 -2.39 -0.02 2.04 16 29 H 0.06 2.06 7.66 -2.39 -0.02 2.05 16 30 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 33 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 35 H 0.13 4.11 6.30 -2.91 -0.02 4.10 16 Total: -1.00 -66.28 303.06 4.17 -62.11 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -0.47 Total: 12.37 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 2.93 Total: -33.32 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -0.18 Total: -72.16 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.88 Total: -11.43 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.74 Total: -3.66 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.28 4.17 -62.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390044657.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.708 kcal (2) G-P(sol) polarization free energy of solvation -66.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds