Wall clock time and date at job start Mon Mar 30 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86801 * 120.00242 * 2 1 4 4 H 1.48500 * 109.47045 * 270.00357 * 3 2 1 5 5 H 1.48501 * 109.46856 * 29.99959 * 3 2 1 6 6 H 1.48495 * 109.47115 * 149.99749 * 3 2 1 7 7 C 1.38647 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99970 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00273 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00044 * 185.05790 * 9 7 2 11 11 C 1.38956 * 120.03043 * 174.18756 * 10 9 7 12 12 C 1.38134 * 120.07877 * 179.72009 * 11 10 9 13 13 C 1.38196 * 120.13781 * 0.55459 * 12 11 10 14 14 C 1.38958 * 120.06385 * 359.72311 * 13 12 11 15 15 N 1.39676 * 120.03701 * 180.02562 * 14 13 12 16 16 C 1.46494 * 120.00454 * 359.97389 * 15 14 13 17 17 C 1.52996 * 109.47489 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47389 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47389 * 179.97438 * 18 17 16 20 20 F 1.39900 * 109.47099 * 180.02562 * 19 18 17 21 21 C 1.38729 * 120.03098 * 354.46284 * 10 9 7 22 22 H 0.96998 * 119.99725 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.95981 * 359.97438 * 11 10 9 24 24 H 1.07990 * 119.93089 * 180.25569 * 12 11 10 25 25 H 1.08000 * 119.96756 * 179.74301 * 13 12 11 26 26 H 0.97005 * 119.99977 * 179.97438 * 15 14 13 27 27 H 1.09005 * 109.47579 * 300.00349 * 16 15 14 28 28 H 1.09005 * 109.47142 * 59.99732 * 16 15 14 29 29 H 1.09002 * 109.47123 * 300.00173 * 17 16 15 30 30 H 1.08996 * 109.47133 * 60.00250 * 17 16 15 31 31 H 1.09005 * 109.47470 * 300.00057 * 18 17 16 32 32 H 1.09013 * 109.47204 * 59.99825 * 18 17 16 33 33 H 1.09002 * 109.47123 * 299.99979 * 19 18 17 34 34 H 1.08996 * 109.47133 * 60.00056 * 19 18 17 35 35 H 1.07995 * 120.07101 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 1.4354 -4.7342 0.2336 12 6 2.1825 -5.8915 0.3358 13 6 3.5630 -5.8296 0.3226 14 6 4.2037 -4.6026 0.2006 15 7 5.5990 -4.5407 0.1868 16 6 6.3880 -5.7697 0.3016 17 6 7.8780 -5.4250 0.2605 18 6 8.7020 -6.7087 0.3797 19 6 10.1920 -6.3640 0.3379 20 9 10.9454 -7.5379 0.4463 21 6 3.4555 -3.4387 0.0920 22 1 -0.4850 0.8401 0.0004 23 1 0.3567 -4.7854 0.2491 24 1 1.6868 -6.8462 0.4311 25 1 4.1445 -6.7358 0.4069 26 1 6.0457 -3.6839 0.1013 27 1 6.1557 -6.2640 1.2450 28 1 6.1457 -6.4357 -0.5267 29 1 8.1107 -4.9306 -0.6827 30 1 8.1199 -4.7594 1.0890 31 1 8.4694 -7.2035 1.3227 32 1 8.4600 -7.3741 -0.4492 33 1 10.4243 -5.8695 -0.6053 34 1 10.4344 -5.6985 1.1664 35 1 3.9510 -2.4838 -0.0034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390754073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:27 Heat of formation + Delta-G solvation = -68.685927 kcal Electronic energy + Delta-G solvation = -17484.139359 eV Core-core repulsion = 14396.534548 eV Total energy + Delta-G solvation = -3087.604811 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.90266 -39.06322 -37.34100 -35.79413 -33.61237 -32.15833 -29.83790 -28.59187 -27.02331 -25.22502 -23.48198 -22.08696 -21.29558 -20.44997 -17.85713 -17.30837 -16.81675 -16.09206 -15.73137 -15.25049 -15.22865 -14.98811 -14.49412 -14.14563 -13.65302 -13.61500 -13.15297 -12.90485 -12.44348 -12.12348 -11.99023 -11.80515 -11.62033 -11.23801 -11.10863 -10.99497 -10.84222 -10.75278 -10.57074 -10.38535 -9.40401 -9.35704 -8.74922 -7.33879 -6.77036 -6.39973 -3.99284 2.39428 2.58385 3.14295 3.15254 3.19687 3.66214 4.00185 4.28402 4.38283 4.58729 4.71500 4.76511 4.86938 5.04097 5.16526 5.34580 5.38526 5.40897 5.43267 5.68879 5.72881 5.90451 5.91303 6.00402 6.29223 6.37407 6.65221 6.66925 7.05134 7.16551 7.40296 7.50226 7.67651 8.02850 8.06319 8.20765 9.06142 9.79060 10.78504 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.003894 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.565158 B = 7187.915031 C = 8304.144906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.389 4.389 8 H 0.090 0.910 9 O -0.179 6.179 10 C 0.189 3.811 11 C -0.236 4.236 12 C -0.040 4.040 13 C -0.280 4.280 14 C 0.247 3.753 15 N -0.756 5.756 16 C 0.133 3.867 17 C -0.130 4.130 18 C -0.149 4.149 19 C 0.061 3.939 20 F -0.221 7.221 21 C -0.302 4.302 22 H 0.269 0.731 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.103 0.897 26 H 0.394 0.606 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.824 -9.591 0.624 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.135 3.865 11 C -0.256 4.256 12 C -0.059 4.059 13 C -0.302 4.302 14 C 0.146 3.854 15 N -0.389 5.389 16 C 0.008 3.992 17 C -0.168 4.168 18 C -0.188 4.188 19 C 0.006 3.994 20 F -0.202 7.202 21 C -0.326 4.326 22 H 0.079 0.921 23 H 0.131 0.869 24 H 0.128 0.872 25 H 0.121 0.879 26 H 0.228 0.772 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.464 -9.588 0.627 18.206 hybrid contribution 0.729 1.117 -0.035 1.335 sum 16.194 -8.471 0.592 18.285 Atomic orbital electron populations 1.70044 1.05913 1.27507 1.46561 1.25271 0.95818 0.98751 0.96747 0.85733 0.78877 0.80293 0.78612 1.19968 1.20297 1.19330 1.21295 0.91722 0.80909 1.52619 0.89216 1.83988 1.34228 1.11464 1.78499 1.19070 0.89499 0.87848 0.90119 1.20053 0.99384 0.90362 1.15851 1.20383 0.93000 0.96530 0.96022 1.20076 0.94460 0.95068 1.20645 1.17463 0.82226 0.93583 0.92094 1.44506 1.02946 1.07785 1.83635 1.21125 0.89166 0.88030 1.00898 1.21664 0.94590 0.97449 1.03082 1.22072 0.93717 0.98799 1.04187 1.22016 0.90170 0.83793 1.03428 1.92766 1.78125 1.51535 1.97801 1.20506 0.93761 0.97164 1.21183 0.92122 0.86892 0.87187 0.87888 0.77210 0.92656 0.92652 0.90997 0.90985 0.90412 0.90420 0.90732 0.90723 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.39 -11.03 9.49 30.88 0.29 -10.74 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -5.21 9.76 0.04 0.00 -5.21 16 10 C 0.19 4.71 6.65 -39.13 -0.26 4.45 16 11 C -0.24 -5.20 9.99 -39.35 -0.39 -5.59 16 12 C -0.04 -0.75 10.03 -39.63 -0.40 -1.15 16 13 C -0.28 -5.04 9.31 -39.33 -0.37 -5.41 16 14 C 0.25 4.66 6.65 -83.81 -0.56 4.11 16 15 N -0.76 -11.02 5.73 -58.66 -0.34 -11.36 16 16 C 0.13 1.47 4.91 -4.05 -0.02 1.45 16 17 C -0.13 -1.03 5.33 -26.73 -0.14 -1.17 16 18 C -0.15 -1.06 5.67 -26.73 -0.15 -1.21 16 19 C 0.06 0.41 7.55 37.16 0.28 0.69 16 20 F -0.22 -2.16 17.36 2.25 0.04 -2.13 16 21 C -0.30 -6.73 9.01 -39.20 -0.35 -7.09 16 22 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 24 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 25 H 0.10 1.59 6.72 -52.49 -0.35 1.24 16 26 H 0.39 5.25 8.48 -40.82 -0.35 4.90 16 27 H 0.06 0.63 7.95 -51.93 -0.41 0.21 16 28 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.12 2.75 5.64 -52.49 -0.30 2.46 16 LS Contribution 302.68 15.07 4.56 4.56 Total: -1.00 -31.81 302.68 -6.77 -38.58 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.61 Total: 5.52 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -2.16 Total: -20.69 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.42 Total: -36.29 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.81 -6.77 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390754073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.102 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds