Wall clock time and date at job start Mon Mar 30 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86801 * 120.00242 * 2 1 4 4 H 1.48500 * 109.47045 * 270.00357 * 3 2 1 5 5 H 1.48501 * 109.46856 * 29.99959 * 3 2 1 6 6 H 1.48495 * 109.47115 * 149.99749 * 3 2 1 7 7 C 1.38647 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99970 * 180.02562 * 7 2 1 9 9 O 1.34833 * 120.00273 * 359.97438 * 7 2 1 10 10 C 1.35751 * 117.00044 * 185.05790 * 9 7 2 11 11 C 1.38956 * 120.03043 * 174.18756 * 10 9 7 12 12 C 1.38134 * 120.07877 * 179.72009 * 11 10 9 13 13 C 1.38196 * 120.13781 * 0.55459 * 12 11 10 14 14 C 1.38958 * 120.06385 * 359.72311 * 13 12 11 15 15 N 1.39676 * 120.03701 * 180.02562 * 14 13 12 16 16 C 1.46494 * 120.00454 * 359.97389 * 15 14 13 17 17 C 1.52996 * 109.47489 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47389 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.47389 * 179.97438 * 18 17 16 20 20 F 1.39900 * 109.47099 * 180.02562 * 19 18 17 21 21 C 1.38729 * 120.03098 * 354.46284 * 10 9 7 22 22 H 0.96998 * 119.99725 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.95981 * 359.97438 * 11 10 9 24 24 H 1.07990 * 119.93089 * 180.25569 * 12 11 10 25 25 H 1.08000 * 119.96756 * 179.74301 * 13 12 11 26 26 H 0.97005 * 119.99977 * 179.97438 * 15 14 13 27 27 H 1.09005 * 109.47579 * 300.00349 * 16 15 14 28 28 H 1.09005 * 109.47142 * 59.99732 * 16 15 14 29 29 H 1.09002 * 109.47123 * 300.00173 * 17 16 15 30 30 H 1.08996 * 109.47133 * 60.00250 * 17 16 15 31 31 H 1.09005 * 109.47470 * 300.00057 * 18 17 16 32 32 H 1.09013 * 109.47204 * 59.99825 * 18 17 16 33 33 H 1.09002 * 109.47123 * 299.99979 * 19 18 17 34 34 H 1.08996 * 109.47133 * 60.00056 * 19 18 17 35 35 H 1.07995 * 120.07101 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 1.4354 -4.7342 0.2336 12 6 2.1825 -5.8915 0.3358 13 6 3.5630 -5.8296 0.3226 14 6 4.2037 -4.6026 0.2006 15 7 5.5990 -4.5407 0.1868 16 6 6.3880 -5.7697 0.3016 17 6 7.8780 -5.4250 0.2605 18 6 8.7020 -6.7087 0.3797 19 6 10.1920 -6.3640 0.3379 20 9 10.9454 -7.5379 0.4463 21 6 3.4555 -3.4387 0.0920 22 1 -0.4850 0.8401 0.0004 23 1 0.3567 -4.7854 0.2491 24 1 1.6868 -6.8462 0.4311 25 1 4.1445 -6.7358 0.4069 26 1 6.0457 -3.6839 0.1013 27 1 6.1557 -6.2640 1.2450 28 1 6.1457 -6.4357 -0.5267 29 1 8.1107 -4.9306 -0.6827 30 1 8.1199 -4.7594 1.0890 31 1 8.4694 -7.2035 1.3227 32 1 8.4600 -7.3741 -0.4492 33 1 10.4243 -5.8695 -0.6053 34 1 10.4344 -5.6985 1.1664 35 1 3.9510 -2.4838 -0.0034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390754073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:22 Heat of formation + Delta-G solvation = -88.822553 kcal Electronic energy + Delta-G solvation = -17485.012549 eV Core-core repulsion = 14396.534548 eV Total energy + Delta-G solvation = -3088.478001 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 4.54 seconds Orbital eigenvalues (eV) -48.54235 -40.76023 -38.86460 -36.98737 -34.75398 -34.12259 -31.16239 -30.15118 -28.18106 -27.19121 -24.39876 -23.43151 -22.27166 -21.96704 -19.72302 -18.97972 -17.38928 -17.25295 -16.77030 -16.51261 -16.40689 -16.01908 -15.93092 -15.64216 -15.44003 -15.13053 -14.45825 -14.12521 -14.08223 -13.48692 -13.05706 -13.02178 -12.74289 -12.65624 -12.43152 -12.15215 -12.04216 -12.00150 -11.75517 -11.48321 -11.27660 -10.92357 -10.59748 -9.09863 -8.44764 -8.22972 -6.13322 0.76548 0.92261 1.34876 1.45472 1.52877 2.19257 2.53622 2.90069 3.27308 3.59950 3.61277 3.87852 3.99578 4.20986 4.25836 4.26570 4.34807 4.41356 4.61673 4.66875 4.74343 4.76902 4.83598 4.94537 5.11053 5.15042 5.17166 5.22356 5.33108 5.47168 5.75787 5.80954 6.04369 6.12034 6.60360 6.89213 7.00553 7.83982 8.79046 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.003894 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.565158 B = 7187.915031 C = 8304.144906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.411 4.411 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.152 3.848 11 C -0.263 4.263 12 C -0.027 4.027 13 C -0.266 4.266 14 C 0.253 3.747 15 N -0.747 5.747 16 C 0.126 3.874 17 C -0.120 4.120 18 C -0.144 4.144 19 C 0.055 3.945 20 F -0.239 7.239 21 C -0.317 4.317 22 H 0.272 0.728 23 H 0.106 0.894 24 H 0.152 0.848 25 H 0.142 0.858 26 H 0.400 0.600 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.804 -10.913 0.814 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.487 4.487 8 H 0.117 0.883 9 O -0.139 6.139 10 C 0.101 3.899 11 C -0.284 4.284 12 C -0.045 4.045 13 C -0.288 4.288 14 C 0.149 3.851 15 N -0.377 5.377 16 C 0.002 3.998 17 C -0.158 4.158 18 C -0.182 4.182 19 C 0.001 3.999 20 F -0.220 7.220 21 C -0.341 4.341 22 H 0.081 0.919 23 H 0.124 0.876 24 H 0.169 0.831 25 H 0.159 0.841 26 H 0.235 0.765 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 18.519 -10.969 0.819 21.539 hybrid contribution -0.035 1.198 -0.078 1.201 sum 18.483 -9.772 0.740 20.920 Atomic orbital electron populations 1.70197 1.08064 1.28719 1.49205 1.26611 0.96858 1.02768 0.95971 0.84577 0.77786 0.74527 0.79228 1.18786 1.19616 1.17632 1.21805 0.92447 0.81505 1.52968 0.88265 1.83950 1.35965 1.12674 1.81342 1.19647 0.90909 0.87702 0.91683 1.20279 0.99629 0.90810 1.17642 1.20836 0.93403 0.96837 0.93457 1.20566 0.94523 0.95987 1.17764 1.17568 0.84183 0.92763 0.90570 1.44686 1.01451 1.09699 1.81874 1.21394 0.90577 0.86489 1.01297 1.21563 0.92352 0.98013 1.03824 1.21996 0.93748 0.98241 1.04221 1.22192 0.89648 0.83224 1.04859 1.92731 1.78606 1.52779 1.97932 1.20530 0.93088 0.98273 1.22220 0.91900 0.87590 0.83054 0.84072 0.76490 0.92147 0.92100 0.90293 0.90318 0.90432 0.90418 0.89344 0.89353 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.71 13.67 21.61 0.30 -57.41 16 2 C -0.03 -1.45 5.49 84.83 0.47 -0.99 16 3 Si 1.02 43.27 29.55 68.60 2.03 45.30 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 7 C -0.41 -24.47 9.49 67.92 0.64 -23.83 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -14.48 9.76 -22.78 -0.22 -14.70 16 10 C 0.15 7.88 6.65 22.56 0.15 8.03 16 11 C -0.26 -11.77 9.99 22.42 0.22 -11.55 16 12 C -0.03 -0.93 10.03 22.24 0.22 -0.71 16 13 C -0.27 -8.62 9.31 22.43 0.21 -8.41 16 14 C 0.25 9.02 6.65 38.20 0.25 9.27 16 15 N -0.75 -19.49 5.73 -339.49 -1.95 -21.43 16 16 C 0.13 2.29 4.91 86.38 0.42 2.71 16 17 C -0.12 -1.44 5.33 30.59 0.16 -1.28 16 18 C -0.14 -1.55 5.67 30.59 0.17 -1.37 16 19 C 0.06 0.59 7.55 71.98 0.54 1.13 16 20 F -0.24 -4.18 17.36 44.97 0.78 -3.40 16 21 C -0.32 -14.28 9.01 22.52 0.20 -14.07 16 22 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 23 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 24 H 0.15 3.99 8.06 -2.92 -0.02 3.97 16 25 H 0.14 3.56 6.72 -2.91 -0.02 3.54 16 26 H 0.40 9.62 8.48 -92.70 -0.79 8.83 16 27 H 0.06 1.09 7.95 -2.38 -0.02 1.07 16 28 H 0.06 1.09 7.95 -2.38 -0.02 1.07 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 5.23 5.64 -2.91 -0.02 5.21 16 Total: -1.00 -73.70 302.68 4.92 -68.78 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.31 Total: 23.93 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: 3.68 Total: -41.06 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -1.65 Total: -78.85 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.22 Total: -14.70 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -73.70 4.92 -68.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390754073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.043 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.54 seconds