Wall clock time and date at job start Mon Mar 30 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81398 * 109.47117 * 2 1 4 4 C 1.76197 * 102.99805 * 180.02562 * 3 2 1 5 5 C 1.39237 * 120.04812 * 180.02562 * 4 3 2 6 6 N 1.32010 * 120.07397 * 179.97438 * 5 4 3 7 7 C 1.32094 * 120.18058 * 359.97438 * 6 5 4 8 8 C 1.39136 * 120.09376 * 0.02562 * 7 6 5 9 9 N 1.38993 * 120.03477 * 180.02562 * 8 7 6 10 10 C 1.46501 * 120.00069 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.46739 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46895 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00059 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00078 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00040 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47506 * 59.99627 * 16 14 12 18 18 H 1.48505 * 109.47358 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47134 * 299.99391 * 16 14 12 20 20 N 1.32751 * 119.92254 * 359.97438 * 8 7 6 21 21 H 1.09002 * 109.46862 * 59.99856 * 1 2 3 22 22 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47043 * 299.99770 * 1 2 3 24 24 H 1.09005 * 109.46680 * 239.99594 * 2 1 3 25 25 H 1.09002 * 109.46862 * 120.00144 * 2 1 3 26 26 H 1.07998 * 119.96646 * 359.97184 * 5 4 3 27 27 H 1.07999 * 119.95301 * 179.97438 * 7 6 5 28 28 H 0.96999 * 120.00078 * 179.97438 * 9 8 7 29 29 H 1.08998 * 109.46835 * 299.99602 * 10 9 8 30 30 H 1.08997 * 109.47320 * 60.00442 * 10 9 8 31 31 H 1.08998 * 109.46935 * 299.99299 * 11 10 9 32 32 H 1.08992 * 109.47708 * 59.99849 * 11 10 9 33 33 H 0.96999 * 119.99661 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8854 1.5116 -0.0008 5 6 4.7141 2.6306 -0.0004 6 7 6.0258 2.4823 -0.0005 7 6 6.5575 1.2731 -0.0004 8 6 5.7362 0.1499 -0.0007 9 7 6.2970 -1.1219 -0.0001 10 6 7.7534 -1.2803 0.0004 11 6 8.1043 -2.7696 0.0005 12 6 9.6025 -2.9326 0.0016 13 1 10.2405 -2.0611 0.0018 14 6 10.1587 -4.1942 0.0024 15 7 9.3817 -5.2554 0.0026 16 14 12.0157 -4.3962 0.0045 17 1 12.5822 -3.7537 1.2175 18 1 12.3564 -5.8417 0.0057 19 1 12.5849 -3.7541 -1.2075 20 7 4.4166 0.2945 -0.0007 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.2832 3.6209 -0.0001 27 1 7.6311 1.1561 -0.0008 28 1 5.7240 -1.9046 0.0001 29 1 8.1704 -0.8092 -0.8896 30 1 8.1699 -0.8085 0.8904 31 1 7.6873 -3.2411 0.8903 32 1 7.6879 -3.2411 -0.8896 33 1 9.7731 -6.1429 0.0035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393632596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:52 Heat of formation + Delta-G solvation = 29.509732 kcal Electronic energy + Delta-G solvation = -15474.050495 eV Core-core repulsion = 12853.376600 eV Total energy + Delta-G solvation = -2620.673895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67387 -36.34906 -34.05460 -33.14822 -32.94694 -30.80515 -28.66619 -25.31455 -24.48349 -23.97370 -22.56653 -21.09799 -17.95786 -17.54669 -16.56047 -16.48846 -15.79978 -15.29421 -14.89541 -14.81980 -14.57411 -14.11270 -13.83493 -12.87792 -12.64062 -12.38706 -12.09337 -11.79710 -11.52386 -11.36822 -11.32433 -11.12205 -10.79940 -10.74876 -10.57833 -10.03766 -9.76617 -9.43122 -9.00058 -8.53191 -8.11016 -7.36533 -6.17910 -4.22430 0.97458 1.31450 1.47349 2.07132 3.25099 3.29592 3.30629 3.42626 3.89289 4.33822 4.59556 4.67957 4.73882 4.75963 5.00512 5.17568 5.19236 5.33857 5.51098 5.54757 5.59643 5.82325 5.94784 6.05176 6.35873 6.49341 6.87081 7.36397 7.47366 7.65495 7.71816 7.80255 8.07161 8.20018 8.82849 9.43157 10.93516 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.035133 B = 0.003830 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.771939 B = 7309.849324 C = 8075.569559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 S -0.073 6.073 4 C 0.125 3.875 5 C -0.015 4.015 6 N -0.388 5.388 7 C -0.022 4.022 8 C 0.380 3.620 9 N -0.700 5.700 10 C 0.122 3.878 11 C 0.014 3.986 12 C -0.527 4.527 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 N -0.522 5.522 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.163 0.837 27 H 0.168 0.832 28 H 0.405 0.595 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.309 11.326 -0.006 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.248 4.248 3 S 0.164 5.836 4 C -0.128 4.128 5 C -0.182 4.182 6 N -0.101 5.101 7 C -0.194 4.194 8 C 0.135 3.865 9 N -0.328 5.328 10 C -0.001 4.001 11 C -0.023 4.023 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.726 3.274 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.200 1.200 20 N -0.251 5.251 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.181 0.819 27 H 0.186 0.814 28 H 0.241 0.759 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.796 12.045 -0.005 19.079 hybrid contribution 1.600 -1.811 -0.001 2.417 sum -13.196 10.235 -0.006 16.699 Atomic orbital electron populations 1.21571 0.92213 1.03048 1.02947 1.23403 0.99166 0.95298 1.06925 1.85391 0.94132 1.12748 1.91281 1.23767 0.99313 0.92033 0.97729 1.22797 0.89061 0.98378 1.07988 1.68179 1.12104 1.24406 1.05372 1.23069 1.01351 0.87021 1.07923 1.19470 0.88729 0.88499 0.89764 1.45187 1.08564 1.03057 1.76014 1.21967 0.75420 1.02305 1.00381 1.19289 0.97384 0.87431 0.98197 1.20955 0.90856 0.92516 1.52201 0.92178 1.25000 0.98528 0.95868 0.94791 1.69946 1.35224 0.98100 1.49746 0.86551 0.84969 0.77092 0.78806 1.20044 1.21189 1.20040 1.68265 1.11564 1.23292 1.21944 0.91714 0.90650 0.91709 0.88978 0.88979 0.81941 0.81444 0.75928 0.92299 0.92291 0.95744 0.95742 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.92 37.16 0.37 -0.67 16 2 C -0.10 -1.01 5.94 37.16 0.22 -0.79 16 3 S -0.07 -0.84 21.92 -107.50 -2.36 -3.20 16 4 C 0.12 1.82 7.00 -16.76 -0.12 1.71 16 5 C -0.01 -0.21 10.97 -17.10 -0.19 -0.40 16 6 N -0.39 -6.18 10.48 -12.68 -0.13 -6.32 16 7 C -0.02 -0.35 10.48 -17.11 -0.18 -0.53 16 8 C 0.38 6.40 7.66 -154.73 -1.19 5.22 16 9 N -0.70 -12.03 5.73 -60.34 -0.35 -12.38 16 10 C 0.12 2.29 4.84 -4.04 -0.02 2.27 16 11 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 12 C -0.53 -13.89 9.11 -34.44 -0.31 -14.21 16 13 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 16 Si 0.90 20.71 29.54 -169.99 -5.02 15.68 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 N -0.52 -8.47 9.63 -11.10 -0.11 -8.57 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 25 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 26 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.17 2.51 6.71 -52.49 -0.35 2.16 16 28 H 0.41 6.85 8.60 -40.82 -0.35 6.49 16 29 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 30 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 300.65 15.07 4.53 4.53 Total: -1.00 -28.69 300.65 -8.80 -37.49 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.45 Total: 3.23 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.65 Total: -5.66 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.15 Total: -52.08 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.36 Total: -3.20 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.69 -8.80 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393632596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.002 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds