Wall clock time and date at job start Mon Mar 30 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81398 * 109.47117 * 2 1 4 4 C 1.76197 * 102.99805 * 180.02562 * 3 2 1 5 5 C 1.39237 * 120.04812 * 180.02562 * 4 3 2 6 6 N 1.32010 * 120.07397 * 179.97438 * 5 4 3 7 7 C 1.32094 * 120.18058 * 359.97438 * 6 5 4 8 8 C 1.39136 * 120.09376 * 0.02562 * 7 6 5 9 9 N 1.38993 * 120.03477 * 180.02562 * 8 7 6 10 10 C 1.46501 * 120.00069 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.46739 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46895 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00059 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00078 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00040 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47506 * 59.99627 * 16 14 12 18 18 H 1.48505 * 109.47358 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47134 * 299.99391 * 16 14 12 20 20 N 1.32751 * 119.92254 * 359.97438 * 8 7 6 21 21 H 1.09002 * 109.46862 * 59.99856 * 1 2 3 22 22 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47043 * 299.99770 * 1 2 3 24 24 H 1.09005 * 109.46680 * 239.99594 * 2 1 3 25 25 H 1.09002 * 109.46862 * 120.00144 * 2 1 3 26 26 H 1.07998 * 119.96646 * 359.97184 * 5 4 3 27 27 H 1.07999 * 119.95301 * 179.97438 * 7 6 5 28 28 H 0.96999 * 120.00078 * 179.97438 * 9 8 7 29 29 H 1.08998 * 109.46835 * 299.99602 * 10 9 8 30 30 H 1.08997 * 109.47320 * 60.00442 * 10 9 8 31 31 H 1.08998 * 109.46935 * 299.99299 * 11 10 9 32 32 H 1.08992 * 109.47708 * 59.99849 * 11 10 9 33 33 H 0.96999 * 119.99661 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8854 1.5116 -0.0008 5 6 4.7141 2.6306 -0.0004 6 7 6.0258 2.4823 -0.0005 7 6 6.5575 1.2731 -0.0004 8 6 5.7362 0.1499 -0.0007 9 7 6.2970 -1.1219 -0.0001 10 6 7.7534 -1.2803 0.0004 11 6 8.1043 -2.7696 0.0005 12 6 9.6025 -2.9326 0.0016 13 1 10.2405 -2.0611 0.0018 14 6 10.1587 -4.1942 0.0024 15 7 9.3817 -5.2554 0.0026 16 14 12.0157 -4.3962 0.0045 17 1 12.5822 -3.7537 1.2175 18 1 12.3564 -5.8417 0.0057 19 1 12.5849 -3.7541 -1.2075 20 7 4.4166 0.2945 -0.0007 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.2832 3.6209 -0.0001 27 1 7.6311 1.1561 -0.0008 28 1 5.7240 -1.9046 0.0001 29 1 8.1704 -0.8092 -0.8896 30 1 8.1699 -0.8085 0.8904 31 1 7.6873 -3.2411 0.8903 32 1 7.6879 -3.2411 -0.8896 33 1 9.7731 -6.1429 0.0035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393632596.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:52 Heat of formation + Delta-G solvation = 12.087862 kcal Electronic energy + Delta-G solvation = -15474.805964 eV Core-core repulsion = 12853.376600 eV Total energy + Delta-G solvation = -2621.429364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.88347 -37.78262 -35.45762 -34.86858 -33.69582 -32.38421 -30.18129 -26.88982 -25.87886 -24.94447 -23.73746 -22.76531 -19.26655 -18.81874 -18.30758 -17.67022 -16.99797 -16.50035 -16.48942 -15.81496 -15.76874 -15.60967 -15.27792 -14.28092 -14.03427 -13.39786 -13.18017 -13.15961 -12.92838 -12.66962 -12.56813 -12.56676 -12.53080 -12.19379 -11.64598 -11.48723 -11.47075 -11.39963 -10.58782 -10.20229 -9.27657 -8.47810 -8.24664 -6.35852 -0.21669 0.24972 0.32581 1.12665 1.43209 1.45180 1.52883 2.06906 2.42809 2.68129 3.11065 3.43289 3.50425 3.75052 3.99330 4.05348 4.14767 4.32436 4.41204 4.46633 4.52444 4.81418 4.89637 4.91181 5.14891 5.21347 5.36782 5.54256 5.57699 5.77840 6.11014 6.34455 6.47502 6.78662 6.87004 7.34342 8.87365 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.035133 B = 0.003830 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.771939 B = 7309.849324 C = 8075.569559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 S -0.039 6.039 4 C 0.109 3.891 5 C -0.011 4.011 6 N -0.399 5.399 7 C -0.035 4.035 8 C 0.367 3.633 9 N -0.704 5.704 10 C 0.144 3.856 11 C 0.021 3.979 12 C -0.543 4.543 13 H 0.071 0.929 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.266 1.266 20 N -0.532 5.532 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.193 0.807 27 H 0.175 0.825 28 H 0.404 0.596 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.796 12.806 -0.006 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.251 4.251 3 S 0.199 5.801 4 C -0.144 4.144 5 C -0.179 4.179 6 N -0.112 5.112 7 C -0.205 4.205 8 C 0.124 3.876 9 N -0.334 5.334 10 C 0.020 3.980 11 C -0.017 4.017 12 C -0.582 4.582 13 H 0.089 0.911 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.212 1.212 19 H -0.191 1.191 20 N -0.260 5.260 21 H 0.090 0.910 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.209 0.791 27 H 0.192 0.808 28 H 0.239 0.761 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.286 13.555 -0.005 20.430 hybrid contribution 1.555 -2.189 -0.001 2.685 sum -13.731 11.366 -0.006 17.825 Atomic orbital electron populations 1.21584 0.89840 1.04200 1.03657 1.23517 1.01101 0.94402 1.06034 1.85274 0.91099 1.13386 1.90342 1.24338 1.01465 0.91602 0.97029 1.23344 0.88664 0.99647 1.06236 1.68206 1.13053 1.24192 1.05760 1.23168 1.01738 0.87023 1.08567 1.19503 0.89288 0.88172 0.90646 1.44908 1.07719 1.03477 1.77271 1.21538 0.76621 0.98752 1.01048 1.19108 0.96190 0.90426 0.95937 1.21459 0.92375 0.92973 1.51353 0.91132 1.25927 1.03413 0.95664 0.94473 1.70080 1.37291 0.98568 1.51113 0.85474 0.79158 0.76972 0.79309 1.19066 1.21198 1.19052 1.68279 1.11370 1.24334 1.22057 0.90974 0.89306 0.90969 0.89893 0.89894 0.79057 0.80778 0.76082 0.91598 0.91591 0.98013 0.98006 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.92 71.98 0.71 -0.97 16 2 C -0.10 -1.93 5.94 71.98 0.43 -1.50 16 3 S -0.04 -0.82 21.92 -56.49 -1.24 -2.06 16 4 C 0.11 3.02 7.00 84.79 0.59 3.61 16 5 C -0.01 -0.29 10.97 84.91 0.93 0.64 16 6 N -0.40 -12.21 10.48 -194.04 -2.03 -14.25 16 7 C -0.03 -1.10 10.48 84.87 0.89 -0.21 16 8 C 0.37 12.27 7.66 132.96 1.02 13.29 16 9 N -0.70 -24.50 5.73 -344.81 -1.98 -26.48 16 10 C 0.14 5.42 4.84 86.38 0.42 5.84 16 11 C 0.02 1.02 5.09 29.85 0.15 1.17 16 12 C -0.54 -28.80 9.11 25.60 0.23 -28.56 16 13 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 14 C 0.00 0.21 5.46 84.65 0.46 0.67 16 15 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 16 Si 0.97 42.31 29.54 68.60 2.03 44.33 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 N -0.53 -16.94 9.63 -189.02 -1.82 -18.76 16 21 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 27 H 0.18 5.11 6.71 -2.91 -0.02 5.09 16 28 H 0.40 14.06 8.60 -92.71 -0.80 13.26 16 29 H 0.07 2.39 7.94 -2.39 -0.02 2.37 16 30 H 0.07 2.39 7.94 -2.39 -0.02 2.37 16 31 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -60.98 300.65 1.40 -59.58 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.31 Total: 17.71 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.84 Total: -6.02 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -5.54 Total: -113.55 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -1.24 Total: -2.06 kcal Total: -60.98 1.40 -59.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393632596.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.669 kcal (2) G-P(sol) polarization free energy of solvation -60.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds