Wall clock time and date at job start Mon Mar 30 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47178 * 300.00045 * 3 2 1 6 6 H 1.48498 * 109.47163 * 60.00307 * 3 2 1 7 7 C 1.37885 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47036 * 179.97438 * 12 11 10 14 14 C 1.36062 * 116.99829 * 179.97438 * 13 12 11 15 15 C 1.38478 * 120.05346 * 359.73115 * 14 13 12 16 16 C 1.38296 * 120.03796 * 179.76330 * 15 14 13 17 17 C 1.38449 * 120.15362 * 0.51415 * 16 15 14 18 18 F 1.35096 * 119.94285 * 179.76829 * 17 16 15 19 19 C 1.38405 * 120.11185 * 359.73297 * 17 16 15 20 20 C 1.38729 * 119.95427 * 0.02562 * 19 17 16 21 21 N 1.39952 * 120.07345 * 180.02562 * 20 19 17 22 22 H 0.97007 * 119.99787 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00495 * 9 7 2 24 24 H 1.08992 * 109.47413 * 300.00826 * 9 7 2 25 25 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 26 26 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 28 28 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 29 29 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 30 30 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 31 31 H 1.08004 * 119.97971 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.91705 * 180.22736 * 16 15 14 33 33 H 1.08000 * 120.02416 * 180.02562 * 19 17 16 34 34 H 0.97001 * 119.99990 * 179.97438 * 21 20 19 35 35 H 0.97005 * 120.00285 * 359.97426 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 8 1.7598 -7.3876 -0.0005 14 6 2.5009 -8.5287 -0.0005 15 6 3.8838 -8.4575 -0.0062 16 6 4.6367 -9.6176 -0.0012 17 6 4.0112 -10.8527 -0.0014 18 9 4.7508 -11.9832 -0.0013 19 6 2.6293 -10.9312 -0.0009 20 6 1.8696 -9.7704 -0.0008 21 7 0.4722 -9.8468 0.0002 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8895 25 1 2.8718 -3.6044 0.8895 26 1 2.8719 -3.6044 -0.8905 27 1 0.8538 -5.0445 -0.8914 28 1 0.8532 -5.0451 0.8885 29 1 3.1017 -6.0922 -0.8901 30 1 3.1004 -6.0924 0.8899 31 1 4.3747 -7.4955 -0.0101 32 1 5.7151 -9.5598 -0.0019 33 1 2.1428 -11.8954 -0.0006 34 1 -0.0580 -9.0345 0.0006 35 1 0.0337 -10.7121 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395363228.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:43 Heat of formation + Delta-G solvation = -83.747013 kcal Electronic energy + Delta-G solvation = -17408.336508 eV Core-core repulsion = 14320.078599 eV Total energy + Delta-G solvation = -3088.257909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.92834 -40.23778 -37.54480 -34.76980 -34.54824 -32.44590 -30.07197 -29.26460 -28.07865 -25.23558 -23.20465 -22.25147 -21.42932 -20.18239 -18.22756 -17.55202 -17.54366 -16.25857 -16.18159 -15.58325 -15.46295 -15.38771 -14.71080 -14.45511 -14.14572 -13.97622 -12.97227 -12.84495 -12.77651 -12.41515 -11.85959 -11.64165 -11.60107 -11.11988 -10.95698 -10.71620 -10.56547 -10.48062 -10.42769 -9.74181 -9.39272 -9.08775 -8.68033 -8.37532 -7.46672 -6.02309 -4.04837 1.08400 1.26281 3.17180 3.29523 3.37137 3.41105 3.51757 3.59417 4.30036 4.44157 4.58749 4.86502 5.07166 5.17605 5.24921 5.30342 5.33775 5.49422 5.55928 5.78197 5.96504 6.01171 6.06322 6.12978 6.35307 6.60458 6.66640 6.81117 7.00154 7.09401 7.50800 7.59475 7.65031 7.78427 7.97649 8.39644 9.02565 9.59476 11.09080 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.049100 B = 0.003052 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.131146 B = 9172.820757 C = 9711.900941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.116 4.116 12 C 0.062 3.938 13 O -0.318 6.318 14 C 0.055 3.945 15 C -0.138 4.138 16 C -0.172 4.172 17 C 0.104 3.896 18 F -0.144 7.144 19 C -0.209 4.209 20 C 0.220 3.780 21 N -0.868 5.868 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.409 0.591 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -21.240 -0.004 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.012 4.012 13 O -0.232 6.232 14 C 0.006 3.994 15 C -0.157 4.157 16 C -0.194 4.194 17 C 0.084 3.916 18 F -0.123 7.123 19 C -0.233 4.233 20 C 0.114 3.886 21 N -0.408 5.408 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.238 0.762 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.334 -21.111 -0.004 21.551 hybrid contribution 0.421 0.794 0.000 0.899 sum 4.755 -20.317 -0.004 20.866 Atomic orbital electron populations 1.69973 1.06075 1.26519 1.50895 1.25035 0.94856 0.99312 0.95326 0.86540 0.80114 0.83777 0.77594 1.19724 1.21006 1.21001 1.21294 0.93079 0.91073 1.50522 0.92619 1.19089 0.93958 0.91147 0.97383 1.21585 0.99273 0.93082 1.00558 1.21690 0.98045 0.92560 1.03102 1.23059 0.96030 0.81121 1.01026 1.86010 1.35618 1.12493 1.89096 1.18511 0.90167 0.85867 1.04840 1.20942 0.91950 0.99356 1.03487 1.20677 1.00613 0.90386 1.07674 1.17190 0.88469 0.81975 1.03966 1.91467 1.76857 1.49767 1.94159 1.20226 0.92072 0.97591 1.13434 1.16788 0.84767 0.90102 0.96922 1.42340 1.02512 1.11313 1.84639 0.93033 0.96487 0.96492 0.93110 0.93118 0.91373 0.91380 0.92202 0.92205 0.84284 0.84924 0.84573 0.76182 0.77357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.10 5.15 -26.73 -0.14 -2.24 16 11 C -0.12 -1.89 5.58 -26.73 -0.15 -2.04 16 12 C 0.06 0.85 4.74 37.16 0.18 1.02 16 13 O -0.32 -4.36 9.38 -19.94 -0.19 -4.55 16 14 C 0.06 0.70 6.70 -39.10 -0.26 0.43 16 15 C -0.14 -1.58 9.03 -39.47 -0.36 -1.94 16 16 C -0.17 -1.88 10.02 -39.48 -0.40 -2.27 16 17 C 0.10 1.18 7.29 -39.44 -0.29 0.89 16 18 F -0.14 -1.67 17.26 2.25 0.04 -1.63 16 19 C -0.21 -2.19 9.87 -39.34 -0.39 -2.58 16 20 C 0.22 2.47 6.77 -83.58 -0.57 1.90 16 21 N -0.87 -7.74 9.09 32.51 0.30 -7.44 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.76 7.65 -51.93 -0.40 0.36 16 30 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 31 H 0.14 1.42 6.29 -52.48 -0.33 1.09 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.41 3.74 8.19 -40.82 -0.33 3.40 16 35 H 0.40 2.49 8.85 -40.82 -0.36 2.13 16 LS Contribution 304.26 15.07 4.59 4.59 Total: -1.00 -30.60 304.26 -7.21 -37.82 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.74 Total: 0.70 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.92 Total: -19.87 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 1.03 Total: -33.53 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.19 Total: -4.55 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.60 -7.21 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395363228.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.932 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds