Wall clock time and date at job start Mon Mar 30 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47178 * 300.00045 * 3 2 1 6 6 H 1.48498 * 109.47163 * 60.00307 * 3 2 1 7 7 C 1.37885 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47036 * 179.97438 * 12 11 10 14 14 C 1.36062 * 116.99829 * 179.97438 * 13 12 11 15 15 C 1.38478 * 120.05346 * 359.73115 * 14 13 12 16 16 C 1.38296 * 120.03796 * 179.76330 * 15 14 13 17 17 C 1.38449 * 120.15362 * 0.51415 * 16 15 14 18 18 F 1.35096 * 119.94285 * 179.76829 * 17 16 15 19 19 C 1.38405 * 120.11185 * 359.73297 * 17 16 15 20 20 C 1.38729 * 119.95427 * 0.02562 * 19 17 16 21 21 N 1.39952 * 120.07345 * 180.02562 * 20 19 17 22 22 H 0.97007 * 119.99787 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00495 * 9 7 2 24 24 H 1.08992 * 109.47413 * 300.00826 * 9 7 2 25 25 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 26 26 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 28 28 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 29 29 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 30 30 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 31 31 H 1.08004 * 119.97971 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.91705 * 180.22736 * 16 15 14 33 33 H 1.08000 * 120.02416 * 180.02562 * 19 17 16 34 34 H 0.97001 * 119.99990 * 179.97438 * 21 20 19 35 35 H 0.97005 * 120.00285 * 359.97426 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 8 1.7598 -7.3876 -0.0005 14 6 2.5009 -8.5287 -0.0005 15 6 3.8838 -8.4575 -0.0062 16 6 4.6367 -9.6176 -0.0012 17 6 4.0112 -10.8527 -0.0014 18 9 4.7508 -11.9832 -0.0013 19 6 2.6293 -10.9312 -0.0009 20 6 1.8696 -9.7704 -0.0008 21 7 0.4722 -9.8468 0.0002 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8895 25 1 2.8718 -3.6044 0.8895 26 1 2.8719 -3.6044 -0.8905 27 1 0.8538 -5.0445 -0.8914 28 1 0.8532 -5.0451 0.8885 29 1 3.1017 -6.0922 -0.8901 30 1 3.1004 -6.0924 0.8899 31 1 4.3747 -7.4955 -0.0101 32 1 5.7151 -9.5598 -0.0019 33 1 2.1428 -11.8954 -0.0006 34 1 -0.0580 -9.0345 0.0006 35 1 0.0337 -10.7121 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395363228.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:43 Heat of formation + Delta-G solvation = -102.031517 kcal Electronic energy + Delta-G solvation = -17409.129384 eV Core-core repulsion = 14320.078599 eV Total energy + Delta-G solvation = -3089.050784 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.80241 -41.14007 -38.51014 -36.42853 -35.35843 -34.36783 -31.12632 -30.59431 -29.11921 -26.87859 -24.49763 -23.17327 -22.70738 -21.75383 -19.13607 -18.50975 -18.44345 -18.28400 -17.26464 -16.55393 -16.49372 -16.27377 -16.17099 -15.56583 -15.54003 -14.92523 -14.44711 -14.00613 -13.91920 -13.67840 -13.49965 -13.09629 -12.92637 -12.68991 -12.37947 -12.32607 -11.84831 -11.76424 -11.50243 -11.33743 -11.33104 -11.10844 -10.55421 -9.51681 -8.29844 -8.19753 -6.30708 0.22897 0.42382 1.41050 1.41296 1.54576 2.18038 2.42375 2.66629 2.84245 3.13824 3.47430 3.75543 4.01205 4.02113 4.14969 4.25238 4.36461 4.45270 4.57455 4.66276 4.74896 4.83080 4.96544 5.13710 5.23131 5.25957 5.27979 5.29138 5.54495 5.76495 5.77472 5.87112 6.21747 6.25522 6.62140 6.87386 6.95184 7.38850 8.92407 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.049100 B = 0.003052 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.131146 B = 9172.820757 C = 9711.900941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.108 4.108 12 C 0.070 3.930 13 O -0.329 6.329 14 C 0.030 3.970 15 C -0.139 4.139 16 C -0.177 4.177 17 C 0.095 3.905 18 F -0.147 7.147 19 C -0.209 4.209 20 C 0.214 3.786 21 N -0.861 5.861 22 H 0.263 0.737 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.408 0.592 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 -21.771 -0.004 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.146 4.146 12 C -0.005 4.005 13 O -0.243 6.243 14 C -0.019 4.019 15 C -0.158 4.158 16 C -0.198 4.198 17 C 0.075 3.925 18 F -0.126 7.126 19 C -0.233 4.233 20 C 0.108 3.892 21 N -0.402 5.402 22 H 0.072 0.928 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.237 0.763 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.740 -21.675 -0.005 22.422 hybrid contribution -0.058 0.887 0.000 0.889 sum 5.682 -20.787 -0.005 21.550 Atomic orbital electron populations 1.70106 1.07860 1.27687 1.51877 1.26008 0.95773 1.03474 0.94824 0.85394 0.79179 0.78745 0.77706 1.18379 1.20482 1.20470 1.21772 0.93688 0.92372 1.50215 0.91912 1.19023 0.94535 0.93136 0.94874 1.21351 0.98079 0.92477 1.01323 1.21462 0.98188 0.92349 1.02554 1.22847 0.94983 0.80374 1.02254 1.85951 1.36020 1.12738 1.89640 1.18752 0.90793 0.85749 1.06580 1.21105 0.91643 1.00105 1.02983 1.20879 1.01549 0.90056 1.07336 1.17399 0.88912 0.82083 1.04110 1.91460 1.76970 1.49928 1.94205 1.20423 0.91890 0.98254 1.12716 1.16938 0.85676 0.89923 0.96704 1.42345 1.01804 1.12080 1.83949 0.92812 0.99036 0.99041 0.92271 0.92277 0.91989 0.92000 0.90975 0.90989 0.83176 0.83286 0.82594 0.76293 0.75878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.09 -3.66 5.15 30.59 0.16 -3.50 16 11 C -0.11 -3.46 5.58 30.60 0.17 -3.29 16 12 C 0.07 1.79 4.74 71.98 0.34 2.13 16 13 O -0.33 -8.63 9.38 -94.25 -0.88 -9.51 16 14 C 0.03 0.71 6.70 22.58 0.15 0.86 16 15 C -0.14 -2.94 9.03 22.34 0.20 -2.74 16 16 C -0.18 -3.54 10.02 22.33 0.22 -3.31 16 17 C 0.09 1.99 7.29 22.36 0.16 2.15 16 18 F -0.15 -3.18 17.26 44.97 0.78 -2.40 16 19 C -0.21 -4.00 9.87 22.43 0.22 -3.78 16 20 C 0.21 4.50 6.77 38.22 0.26 4.76 16 21 N -0.86 -14.17 9.09 -51.07 -0.46 -14.64 16 22 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 1.67 7.65 -2.39 -0.02 1.65 16 30 H 0.07 1.67 7.68 -2.39 -0.02 1.65 16 31 H 0.15 2.74 6.29 -2.91 -0.02 2.72 16 32 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.41 7.06 8.19 -92.71 -0.76 6.30 16 35 H 0.41 4.45 8.85 -92.70 -0.82 3.63 16 Total: -1.00 -65.23 304.26 4.00 -61.22 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -0.47 Total: 11.56 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 2.73 Total: -35.53 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -0.18 Total: -71.30 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.88 Total: -9.51 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -65.23 4.00 -61.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395363228.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.809 kcal (2) G-P(sol) polarization free energy of solvation -65.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds