Wall clock time and date at job start Mon Mar 30 2020 06:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38347 * 120.04731 * 2 1 4 4 F 1.35107 * 119.98778 * 0.04327 * 3 2 1 5 5 C 1.38492 * 120.02203 * 180.02562 * 3 2 1 6 6 C 1.38262 * 120.12534 * 0.02562 * 5 3 2 7 7 C 1.38091 * 120.10112 * 359.74240 * 6 5 3 8 8 C 1.38843 * 120.05109 * 180.02562 * 2 1 3 9 9 N 1.39667 * 120.05909 * 359.95079 * 8 2 1 10 10 C 1.46505 * 119.99755 * 180.02562 * 9 8 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 8 12 12 O 1.42904 * 109.47396 * 64.99584 * 11 10 9 13 13 C 1.42896 * 114.00313 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46851 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00616 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99887 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99815 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00265 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47378 * 89.99191 * 18 16 14 20 20 H 1.48498 * 109.47222 * 209.99557 * 18 16 14 21 21 H 1.48506 * 109.46855 * 329.99448 * 18 16 14 22 22 H 1.09005 * 109.47274 * 269.97972 * 1 2 3 23 23 H 1.08999 * 109.47362 * 29.97697 * 1 2 3 24 24 H 1.08999 * 109.47213 * 149.97831 * 1 2 3 25 25 H 1.08000 * 119.93784 * 180.02562 * 5 3 2 26 26 H 1.07999 * 119.95144 * 180.02562 * 6 5 3 27 27 H 1.08002 * 120.02059 * 180.25926 * 7 6 5 28 28 H 0.96996 * 120.00638 * 0.02562 * 9 8 2 29 29 H 1.09002 * 109.47068 * 300.00057 * 10 9 8 30 30 H 1.09001 * 109.47372 * 60.00145 * 10 9 8 31 31 H 1.09001 * 109.47630 * 184.99905 * 11 10 9 32 32 H 1.09004 * 109.47346 * 305.00035 * 11 10 9 33 33 H 1.08999 * 109.46799 * 300.00326 * 13 12 11 34 34 H 1.08998 * 109.47187 * 59.99969 * 13 12 11 35 35 H 0.97003 * 120.00101 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1976 0.0000 4 9 1.5249 2.3680 0.0009 5 6 3.5847 1.1969 -0.0005 6 6 4.2781 0.0008 -0.0016 7 6 3.5918 -1.1975 0.0032 8 6 2.2023 -1.2018 -0.0005 9 7 1.5063 -2.4127 0.0000 10 6 2.2413 -3.6800 0.0000 11 6 1.2494 -4.8449 0.0012 12 8 0.5061 -4.8389 -1.2193 13 6 -0.4543 -5.8923 -1.3201 14 6 -1.1752 -5.7900 -2.6395 15 1 -0.9254 -4.9995 -3.3316 16 6 -2.1546 -6.7052 -2.9627 17 7 -2.4592 -7.6676 -2.1197 18 14 -3.0489 -6.5781 -4.5978 19 1 -2.3207 -7.3681 -5.6229 20 1 -4.4277 -7.1095 -4.4506 21 1 -3.1091 -5.1555 -5.0198 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 4.1241 2.1326 -0.0001 26 1 5.3581 0.0036 -0.0016 27 1 4.1348 -2.1312 0.0066 28 1 0.5364 -2.4147 0.0003 29 1 2.8678 -3.7367 -0.8902 30 1 2.8684 -3.7364 0.8897 31 1 1.7933 -5.7852 0.0907 32 1 0.5657 -4.7390 0.8435 33 1 0.0540 -6.8545 -1.2578 34 1 -1.1732 -5.8077 -0.5053 35 1 -3.1480 -8.3116 -2.3472 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395466035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:52 Heat of formation + Delta-G solvation = -78.110981 kcal Electronic energy + Delta-G solvation = -17848.152922 eV Core-core repulsion = 14760.139410 eV Total energy + Delta-G solvation = -3088.013512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.84321 -39.51302 -37.18015 -35.15086 -32.91652 -32.56335 -30.18513 -28.15159 -26.97784 -26.48768 -23.06799 -22.37528 -21.55736 -21.02175 -17.84677 -16.99545 -16.40010 -15.88658 -15.63145 -15.61945 -15.46440 -15.00950 -14.55846 -14.02092 -13.75902 -13.42531 -13.21927 -13.03064 -12.86365 -12.42949 -11.95969 -11.89667 -11.59344 -11.31508 -11.11299 -10.92074 -10.85547 -10.72229 -10.11841 -10.00115 -9.20792 -8.96470 -8.59145 -8.30254 -7.37083 -6.18535 -4.20862 1.24841 1.50707 3.26003 3.31405 3.36491 3.45062 3.71516 4.26836 4.41902 4.67864 4.78345 4.92333 5.02876 5.18304 5.21997 5.37665 5.44438 5.53049 5.63438 5.66547 5.83245 5.88087 5.95405 6.07757 6.14503 6.21655 6.29201 6.44047 6.86585 6.96360 7.30186 7.35418 7.70902 7.80409 8.04641 8.43061 8.91525 9.44552 10.92846 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028403 B = 0.004047 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.571437 B = 6917.759300 C = 7501.192724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.202 4.202 3 C 0.141 3.859 4 F -0.142 7.142 5 C -0.221 4.221 6 C -0.048 4.048 7 C -0.210 4.210 8 C 0.252 3.748 9 N -0.727 5.727 10 C 0.127 3.873 11 C 0.048 3.952 12 O -0.394 6.394 13 C 0.195 3.805 14 C -0.517 4.517 15 H 0.066 0.934 16 C 0.058 3.942 17 N -0.898 5.898 18 Si 0.908 3.092 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.408 0.592 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.042 13.099 6.757 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.208 4.208 3 C 0.121 3.879 4 F -0.120 7.120 5 C -0.243 4.243 6 C -0.067 4.067 7 C -0.233 4.233 8 C 0.145 3.855 9 N -0.356 5.356 10 C 0.003 3.997 11 C -0.030 4.030 12 O -0.314 6.314 13 C 0.121 3.879 14 C -0.556 4.556 15 H 0.085 0.915 16 C -0.144 4.144 17 N -0.537 5.537 18 Si 0.735 3.265 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.246 0.754 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.005 12.892 6.630 18.200 hybrid contribution -1.014 -0.156 -0.600 1.188 sum 9.991 12.736 6.030 17.273 Atomic orbital electron populations 1.20535 0.90376 1.03236 1.02238 1.19267 0.96732 0.90791 1.14018 1.17216 0.89751 0.80182 1.00708 1.91452 1.80705 1.46131 1.93757 1.20757 0.91920 0.99449 1.12131 1.20644 0.99468 0.91051 0.95565 1.20680 0.91978 0.98915 1.11769 1.17420 0.91142 0.85426 0.91533 1.44892 1.09079 1.02083 1.79529 1.21476 0.94633 0.82345 1.01271 1.22481 0.94203 0.96442 0.89842 1.87899 1.53834 1.54442 1.35186 1.20233 0.85691 0.84512 0.97468 1.21035 1.19037 1.13452 1.02034 0.91541 1.24946 0.96699 0.94903 0.97839 1.69955 1.32036 1.15795 1.35905 0.86330 0.78666 0.78570 0.82913 1.20399 1.21018 1.19594 0.91467 0.91339 0.91121 0.85578 0.85479 0.85549 0.75440 0.91304 0.91319 0.92665 0.93803 0.97586 0.97634 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.39 36.01 0.34 -1.02 16 2 C -0.20 -2.78 5.90 -104.36 -0.62 -3.39 16 3 C 0.14 1.88 7.24 -39.45 -0.29 1.60 16 4 F -0.14 -1.92 16.48 2.25 0.04 -1.88 16 5 C -0.22 -2.56 10.02 -39.48 -0.40 -2.96 16 6 C -0.05 -0.52 10.04 -39.63 -0.40 -0.92 16 7 C -0.21 -2.53 9.31 -39.37 -0.37 -2.89 16 8 C 0.25 3.45 6.63 -83.80 -0.56 2.89 16 9 N -0.73 -10.34 5.58 -58.64 -0.33 -10.66 16 10 C 0.13 1.71 5.30 -4.04 -0.02 1.69 16 11 C 0.05 0.80 6.07 37.16 0.23 1.03 16 12 O -0.39 -8.88 10.27 -35.23 -0.36 -9.24 16 13 C 0.20 5.14 5.69 36.00 0.20 5.35 16 14 C -0.52 -14.89 9.43 -34.44 -0.32 -15.22 16 15 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 18 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.83 7.64 -51.93 -0.40 0.44 16 24 H 0.07 0.93 6.55 -51.93 -0.34 0.59 16 25 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 27 H 0.13 1.33 6.73 -52.49 -0.35 0.97 16 28 H 0.41 6.08 6.47 -40.82 -0.26 5.81 16 29 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 30 H 0.07 0.75 7.94 -51.93 -0.41 0.33 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 303.19 15.07 4.57 4.57 Total: -1.00 -30.48 303.19 -7.34 -37.82 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.68 Total: 0.80 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -2.29 Total: -12.29 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.41 Total: -36.29 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.36 Total: -9.24 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.48 -7.34 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395466035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.290 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds