Wall clock time and date at job start Mon Mar 30 2020 07:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33391 * 125.20037 * 2 1 4 4 C 1.38428 * 114.92047 * 179.74720 * 3 2 1 5 5 C 1.33392 * 114.91525 * 0.43117 * 4 3 2 6 6 C 1.50706 * 125.19941 * 179.86008 * 5 4 3 7 7 H 1.08997 * 109.47059 * 19.71120 * 6 5 4 8 8 C 1.53002 * 109.47016 * 259.71936 * 6 5 4 9 9 N 1.46891 * 109.47291 * 139.72028 * 6 5 4 10 10 C 1.46904 * 110.99972 * 301.23991 * 9 6 5 11 11 C 1.46903 * 111.00360 * 177.28625 * 9 6 5 12 12 H 1.09000 * 109.46344 * 306.21345 * 11 9 6 13 13 C 1.52996 * 109.47124 * 186.21501 * 11 9 6 14 14 C 1.50697 * 109.47132 * 66.20975 * 11 9 6 15 15 H 1.08009 * 119.99996 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00160 * 180.02562 * 14 11 9 17 17 N 1.31512 * 119.99907 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00068 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47596 * 89.99961 * 18 16 14 20 20 H 1.48504 * 109.47159 * 210.00124 * 18 16 14 21 21 H 1.48500 * 109.47075 * 329.99683 * 18 16 14 22 22 S 1.75879 * 109.59767 * 359.59317 * 5 4 3 23 23 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47268 * 300.00510 * 1 2 3 25 25 H 1.09000 * 109.47345 * 60.00131 * 1 2 3 26 26 H 1.08002 * 122.54537 * 359.97438 * 3 2 1 27 27 H 1.07995 * 122.54505 * 180.26951 * 4 3 2 28 28 H 1.09000 * 109.47580 * 53.37192 * 8 6 5 29 29 H 1.08993 * 109.47285 * 173.37544 * 8 6 5 30 30 H 1.09002 * 109.46936 * 293.37679 * 8 6 5 31 31 H 1.09001 * 109.47104 * 59.99904 * 10 9 6 32 32 H 1.08994 * 109.47374 * 180.02562 * 10 9 6 33 33 H 1.09002 * 109.46734 * 299.99888 * 10 9 6 34 34 H 1.09002 * 109.47730 * 53.46967 * 13 11 9 35 35 H 1.09000 * 109.46772 * 173.47030 * 13 11 9 36 36 H 1.08998 * 109.46950 * 293.46613 * 13 11 9 37 37 H 0.97000 * 120.00265 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 0.0055 5 6 3.9750 -0.4477 0.0009 6 6 5.3860 -0.9770 0.0023 7 1 6.0651 -0.2003 0.3540 8 6 5.7768 -1.3911 -1.4178 9 7 5.4711 -2.1420 0.8930 10 6 5.0738 -1.7880 2.2622 11 6 6.8194 -2.7249 0.8702 12 1 7.1044 -2.9407 -0.1595 13 6 6.8288 -4.0203 1.6842 14 6 7.7990 -1.7484 1.4683 15 1 7.4544 -0.7907 1.8298 16 6 9.1351 -2.0775 1.5543 17 7 9.5546 -3.2438 1.1147 18 14 10.3493 -0.8674 2.2964 19 1 10.4525 -1.1036 3.7589 20 1 11.6821 -1.0560 1.6693 21 1 9.8785 0.5195 2.0510 22 16 2.5209 -1.4371 0.0007 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8669 2.0896 -0.0004 27 1 4.3720 1.6350 0.0105 28 1 5.6015 -0.5594 -2.1001 29 1 6.8321 -1.6628 -1.4397 30 1 5.1750 -2.2463 -1.7254 31 1 4.0463 -1.4242 2.2598 32 1 5.1464 -2.6683 2.9007 33 1 5.7343 -1.0086 2.6422 34 1 6.0405 -4.6814 1.3243 35 1 7.7949 -4.5124 1.5726 36 1 6.6578 -3.7898 2.7357 37 1 10.4947 -3.4753 1.1747 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395726061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:01 Heat of formation + Delta-G solvation = 30.555668 kcal Electronic energy + Delta-G solvation = -17043.305375 eV Core-core repulsion = 14526.217179 eV Total energy + Delta-G solvation = -2517.088196 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -38.31106 -36.89730 -33.30573 -31.81555 -30.24606 -28.61206 -26.15686 -25.17954 -24.25815 -22.88636 -21.35967 -19.10039 -18.47041 -16.45111 -16.09091 -15.16178 -14.96682 -14.42579 -13.90649 -13.55170 -13.50430 -12.95484 -12.86174 -12.32929 -12.07912 -11.99820 -11.49494 -11.48095 -11.29785 -11.08545 -10.89037 -10.82553 -10.63223 -10.54758 -10.23360 -10.14602 -9.91184 -9.74777 -9.12185 -8.39634 -8.07026 -8.02403 -7.18139 -6.00551 -4.12325 1.35535 2.00594 2.47270 3.05797 3.25849 3.33309 3.35878 4.38940 4.97672 5.04098 5.26316 5.30975 5.35264 5.52129 5.69030 5.85112 5.97843 5.99954 6.10605 6.20378 6.35954 6.44623 6.54426 6.63291 6.73484 6.79612 6.85011 6.86341 6.98102 7.06198 7.21814 7.56889 7.71555 7.96009 8.14734 8.29068 8.42457 8.96730 9.55166 11.00356 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.005934 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.724009 B = 4717.577289 C = 4989.131140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.215 4.215 3 C -0.137 4.137 4 C -0.159 4.159 5 C -0.138 4.138 6 C 0.151 3.849 7 H 0.064 0.936 8 C -0.136 4.136 9 N -0.535 5.535 10 C 0.032 3.968 11 C 0.204 3.796 12 H 0.046 0.954 13 C -0.127 4.127 14 C -0.542 4.542 15 H 0.055 0.945 16 C 0.070 3.930 17 N -0.886 5.886 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.276 1.276 22 S 0.135 5.865 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.015 0.985 35 H 0.080 0.920 36 H 0.027 0.973 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.436 5.144 -2.672 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.332 4.332 3 C -0.167 4.167 4 C -0.189 4.189 5 C -0.257 4.257 6 C 0.040 3.960 7 H 0.081 0.919 8 C -0.193 4.193 9 N -0.259 5.259 10 C -0.117 4.117 11 C 0.098 3.902 12 H 0.064 0.936 13 C -0.186 4.186 14 C -0.581 4.581 15 H 0.073 0.927 16 C -0.133 4.133 17 N -0.524 5.524 18 Si 0.714 3.286 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.201 1.201 22 S 0.399 5.601 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.871 3.105 -2.874 14.502 hybrid contribution 1.746 2.918 0.867 3.509 sum -12.125 6.022 -2.007 13.686 Atomic orbital electron populations 1.20218 0.88582 1.02357 1.02211 1.24575 0.99731 0.97296 1.11647 1.19891 0.92923 0.98729 1.05200 1.20008 0.95964 0.96014 1.06954 1.24874 0.99129 0.95893 1.05775 1.19970 0.87467 0.93699 0.94841 0.91858 1.21818 1.02850 1.00494 0.94175 1.62659 1.29977 1.25957 1.07339 1.22227 0.98094 1.00285 0.91132 1.19357 0.81852 0.91985 0.97027 0.93584 1.21770 1.00820 0.97897 0.98079 1.21682 0.93004 1.02258 1.41188 0.92671 1.24880 0.98222 0.95076 0.95104 1.69891 1.15481 1.20611 1.46447 0.86696 0.80808 0.81678 0.79417 1.20735 1.21185 1.20095 1.84366 0.95599 1.07973 1.72143 0.91827 0.91229 0.91251 0.85372 0.85003 0.93399 0.90710 0.92571 0.93858 0.91988 0.95299 0.96629 0.90175 0.95370 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.38 36.00 0.37 -0.38 16 2 C -0.22 -2.91 6.51 -36.00 -0.23 -3.14 16 3 C -0.14 -1.89 10.05 -41.21 -0.41 -2.30 16 4 C -0.16 -2.49 10.04 -41.21 -0.41 -2.90 16 5 C -0.14 -2.38 4.10 -36.00 -0.15 -2.52 16 6 C 0.15 2.94 2.23 -68.87 -0.15 2.79 16 7 H 0.06 1.36 6.93 -51.93 -0.36 1.00 16 8 C -0.14 -2.50 8.65 37.16 0.32 -2.18 16 9 N -0.53 -11.34 4.38 -229.69 -1.01 -12.35 16 10 C 0.03 0.64 8.59 60.07 0.52 1.16 16 11 C 0.20 4.96 2.05 -68.87 -0.14 4.82 16 12 H 0.05 1.21 6.07 -51.93 -0.31 0.90 16 13 C -0.13 -3.08 8.51 37.16 0.32 -2.76 16 14 C -0.54 -14.28 7.13 -34.44 -0.25 -14.53 16 15 H 0.06 1.48 5.81 -52.48 -0.31 1.17 16 16 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 17 N -0.89 -24.66 11.40 55.43 0.63 -24.03 16 18 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 S 0.13 2.10 22.19 -107.50 -2.39 -0.29 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.52 6.61 -51.93 -0.34 1.17 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.81 6.33 -51.93 -0.33 0.48 16 32 H 0.06 1.26 6.31 -51.93 -0.33 0.94 16 33 H 0.03 0.62 6.47 -51.93 -0.34 0.29 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 2.10 6.27 -51.93 -0.33 1.77 16 36 H 0.03 0.66 6.71 -51.93 -0.35 0.31 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 303.15 15.07 4.57 4.57 Total: -1.00 -27.36 303.15 -9.04 -36.40 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.51 Total: -0.15 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -0.32 Total: -20.16 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.37 Total: -36.37 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.39 Total: -0.29 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.36 -9.04 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395726061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.952 kcal (2) G-P(sol) polarization free energy of solvation -27.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds