Wall clock time and date at job start Mon Mar 30 2020 07:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33391 * 125.20037 * 2 1 4 4 C 1.38428 * 114.92047 * 179.74720 * 3 2 1 5 5 C 1.33392 * 114.91525 * 0.43117 * 4 3 2 6 6 C 1.50706 * 125.19941 * 179.86008 * 5 4 3 7 7 H 1.08997 * 109.47059 * 19.71120 * 6 5 4 8 8 C 1.53002 * 109.47016 * 259.71936 * 6 5 4 9 9 N 1.46891 * 109.47291 * 139.72028 * 6 5 4 10 10 C 1.46904 * 110.99972 * 301.23991 * 9 6 5 11 11 C 1.46903 * 111.00360 * 177.28625 * 9 6 5 12 12 H 1.09000 * 109.46344 * 306.21345 * 11 9 6 13 13 C 1.52996 * 109.47124 * 186.21501 * 11 9 6 14 14 C 1.50697 * 109.47132 * 66.20975 * 11 9 6 15 15 H 1.08009 * 119.99996 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00160 * 180.02562 * 14 11 9 17 17 N 1.31512 * 119.99907 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00068 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47596 * 89.99961 * 18 16 14 20 20 H 1.48504 * 109.47159 * 210.00124 * 18 16 14 21 21 H 1.48500 * 109.47075 * 329.99683 * 18 16 14 22 22 S 1.75879 * 109.59767 * 359.59317 * 5 4 3 23 23 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47268 * 300.00510 * 1 2 3 25 25 H 1.09000 * 109.47345 * 60.00131 * 1 2 3 26 26 H 1.08002 * 122.54537 * 359.97438 * 3 2 1 27 27 H 1.07995 * 122.54505 * 180.26951 * 4 3 2 28 28 H 1.09000 * 109.47580 * 53.37192 * 8 6 5 29 29 H 1.08993 * 109.47285 * 173.37544 * 8 6 5 30 30 H 1.09002 * 109.46936 * 293.37679 * 8 6 5 31 31 H 1.09001 * 109.47104 * 59.99904 * 10 9 6 32 32 H 1.08994 * 109.47374 * 180.02562 * 10 9 6 33 33 H 1.09002 * 109.46734 * 299.99888 * 10 9 6 34 34 H 1.09002 * 109.47730 * 53.46967 * 13 11 9 35 35 H 1.09000 * 109.46772 * 173.47030 * 13 11 9 36 36 H 1.08998 * 109.46950 * 293.46613 * 13 11 9 37 37 H 0.97000 * 120.00265 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 0.0055 5 6 3.9750 -0.4477 0.0009 6 6 5.3860 -0.9770 0.0023 7 1 6.0651 -0.2003 0.3540 8 6 5.7768 -1.3911 -1.4178 9 7 5.4711 -2.1420 0.8930 10 6 5.0738 -1.7880 2.2622 11 6 6.8194 -2.7249 0.8702 12 1 7.1044 -2.9407 -0.1595 13 6 6.8288 -4.0203 1.6842 14 6 7.7990 -1.7484 1.4683 15 1 7.4544 -0.7907 1.8298 16 6 9.1351 -2.0775 1.5543 17 7 9.5546 -3.2438 1.1147 18 14 10.3493 -0.8674 2.2964 19 1 10.4525 -1.1036 3.7589 20 1 11.6821 -1.0560 1.6693 21 1 9.8785 0.5195 2.0510 22 16 2.5209 -1.4371 0.0007 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8669 2.0896 -0.0004 27 1 4.3720 1.6350 0.0105 28 1 5.6015 -0.5594 -2.1001 29 1 6.8321 -1.6628 -1.4397 30 1 5.1750 -2.2463 -1.7254 31 1 4.0463 -1.4242 2.2598 32 1 5.1464 -2.6683 2.9007 33 1 5.7343 -1.0086 2.6422 34 1 6.0405 -4.6814 1.3243 35 1 7.7949 -4.5124 1.5726 36 1 6.6578 -3.7898 2.7357 37 1 10.4947 -3.4753 1.1747 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395726061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:00 Heat of formation + Delta-G solvation = 15.995149 kcal Electronic energy + Delta-G solvation = -17043.936767 eV Core-core repulsion = 14526.217179 eV Total energy + Delta-G solvation = -2517.719588 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79512 -38.29505 -35.09328 -33.36596 -31.56003 -30.44483 -27.41833 -27.16073 -25.96869 -24.08267 -22.84982 -20.93093 -19.68456 -18.20010 -17.67030 -16.90024 -16.28687 -16.14313 -15.41259 -14.96128 -14.77685 -14.54817 -14.05974 -13.82524 -13.49955 -13.25763 -13.14179 -12.99924 -12.86766 -12.67696 -12.64170 -12.41951 -12.32995 -12.17161 -11.97381 -11.77330 -11.56491 -11.42479 -11.08458 -10.46752 -9.25561 -9.20556 -8.99658 -8.05044 -6.24805 0.18623 0.83418 1.29485 1.36177 1.38666 1.46614 1.91011 2.39860 3.16130 3.37006 3.91180 4.10139 4.39337 4.47908 4.52662 4.53868 4.70195 4.81058 4.82996 4.85582 4.89296 4.96423 5.09897 5.14100 5.15512 5.18159 5.20872 5.31656 5.35261 5.46564 5.56600 5.69268 5.75348 5.99215 6.18618 6.35977 6.58920 6.93894 7.45535 8.92547 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.005934 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.724009 B = 4717.577289 C = 4989.131140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.196 4.196 3 C -0.148 4.148 4 C -0.150 4.150 5 C -0.171 4.171 6 C 0.155 3.845 7 H 0.037 0.963 8 C -0.127 4.127 9 N -0.531 5.531 10 C 0.041 3.959 11 C 0.208 3.792 12 H 0.023 0.977 13 C -0.116 4.116 14 C -0.547 4.547 15 H 0.047 0.953 16 C 0.025 3.975 17 N -0.911 5.911 18 Si 0.943 3.057 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.274 1.274 22 S 0.116 5.884 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.157 0.843 27 H 0.137 0.863 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.010 0.990 34 H 0.029 0.971 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.414 6.533 -2.573 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.313 4.313 3 C -0.178 4.178 4 C -0.181 4.181 5 C -0.289 4.289 6 C 0.045 3.955 7 H 0.055 0.945 8 C -0.185 4.185 9 N -0.255 5.255 10 C -0.108 4.108 11 C 0.101 3.899 12 H 0.041 0.959 13 C -0.174 4.174 14 C -0.586 4.586 15 H 0.065 0.935 16 C -0.175 4.175 17 N -0.550 5.550 18 Si 0.770 3.230 19 H -0.204 1.204 20 H -0.208 1.208 21 H -0.199 1.199 22 S 0.380 5.620 23 H 0.088 0.912 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.174 0.826 27 H 0.155 0.845 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.859 4.499 -2.776 16.717 hybrid contribution 2.247 2.530 0.806 3.478 sum -13.612 7.029 -1.969 15.446 Atomic orbital electron populations 1.20384 0.85814 1.03411 1.03937 1.25039 1.01324 0.95781 1.09198 1.20126 0.91941 1.00236 1.05466 1.20264 0.97280 0.95490 1.05075 1.24519 0.98236 0.96823 1.09331 1.19834 0.89054 0.92124 0.94489 0.94478 1.21724 1.00985 1.01341 0.94435 1.62596 1.27733 1.27125 1.08092 1.22160 0.98673 0.99523 0.90454 1.19150 0.83237 0.92030 0.95436 0.95894 1.21604 1.00001 0.97884 0.97961 1.21856 0.93673 1.02215 1.40861 0.93504 1.25542 0.99793 0.96530 0.95651 1.70001 1.15750 1.21895 1.47367 0.85786 0.78835 0.79726 0.78650 1.20410 1.20802 1.19929 1.84374 0.95548 1.09392 1.72712 0.91197 0.89502 0.89296 0.82554 0.84547 0.91312 0.93396 0.92379 0.91949 0.92243 0.97101 0.95168 0.92439 0.95503 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.38 71.24 0.74 -0.49 16 2 C -0.20 -4.67 6.51 24.59 0.16 -4.51 16 3 C -0.15 -3.61 10.05 21.22 0.21 -3.40 16 4 C -0.15 -4.43 10.04 21.22 0.21 -4.21 16 5 C -0.17 -5.72 4.10 24.59 0.10 -5.62 16 6 C 0.16 6.12 2.23 44.17 0.10 6.22 16 7 H 0.04 1.64 6.93 -2.39 -0.02 1.63 16 8 C -0.13 -4.76 8.65 71.98 0.62 -4.14 16 9 N -0.53 -22.78 4.38 -880.61 -3.86 -26.64 16 10 C 0.04 1.66 8.59 127.69 1.10 2.75 16 11 C 0.21 10.40 2.05 44.17 0.09 10.49 16 12 H 0.02 1.26 6.07 -2.39 -0.01 1.25 16 13 C -0.12 -5.70 8.51 71.98 0.61 -5.08 16 14 C -0.55 -29.40 7.13 25.60 0.18 -29.22 16 15 H 0.05 2.56 5.81 -2.91 -0.02 2.54 16 16 C 0.02 1.36 5.30 84.65 0.45 1.81 16 17 N -0.91 -51.62 11.40 21.45 0.24 -51.37 16 18 Si 0.94 43.53 29.54 68.60 2.03 45.56 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 S 0.12 3.40 22.19 -56.49 -1.25 2.15 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 27 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 2.02 6.61 -2.39 -0.02 2.00 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 2.28 6.33 -2.39 -0.02 2.26 16 32 H 0.06 2.41 6.31 -2.39 -0.02 2.39 16 33 H 0.01 0.46 6.47 -2.39 -0.02 0.45 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 3.07 6.27 -2.39 -0.01 3.06 16 36 H 0.03 1.27 6.71 -2.39 -0.02 1.25 16 37 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -58.47 303.15 2.79 -55.68 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.05 Total: 10.02 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 4.58 Total: -35.39 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -3.61 Total: -78.01 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.25 Total: 2.15 kcal Total: -58.47 2.79 -55.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395726061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.674 kcal (2) G-P(sol) polarization free energy of solvation -58.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds