Wall clock time and date at job start Mon Mar 30 2020 07:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33392 * 125.19788 * 2 1 4 4 C 1.38428 * 114.91464 * 179.75016 * 3 2 1 5 5 C 1.33384 * 114.92494 * 0.43293 * 4 3 2 6 6 C 1.50699 * 125.20431 * 179.85805 * 5 4 3 7 7 H 1.09000 * 109.47247 * 19.71897 * 6 5 4 8 8 C 1.52997 * 109.47265 * 259.71711 * 6 5 4 9 9 N 1.46906 * 109.47140 * 139.71876 * 6 5 4 10 10 C 1.46902 * 110.99573 * 303.95370 * 9 6 5 11 11 C 1.46898 * 110.99888 * 180.02562 * 9 6 5 12 12 H 1.08999 * 109.46988 * 309.99510 * 11 9 6 13 13 C 1.52993 * 109.47078 * 70.00120 * 11 9 6 14 14 C 1.50702 * 109.46796 * 189.99926 * 11 9 6 15 15 H 1.08003 * 119.99822 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99809 * 180.02562 * 14 11 9 17 17 N 1.31523 * 120.00246 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 120.00116 * 359.97438 * 16 14 11 19 19 H 1.48496 * 109.47222 * 90.00275 * 18 16 14 20 20 H 1.48496 * 109.47118 * 210.00206 * 18 16 14 21 21 H 1.48501 * 109.47094 * 329.99916 * 18 16 14 22 22 S 1.75876 * 125.20520 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46978 * 299.99876 * 1 2 3 25 25 H 1.09000 * 109.47404 * 59.99742 * 1 2 3 26 26 H 1.07996 * 122.54433 * 359.97438 * 3 2 1 27 27 H 1.08006 * 122.53784 * 180.27360 * 4 3 2 28 28 H 1.09001 * 109.47230 * 59.99396 * 8 6 5 29 29 H 1.09001 * 109.47375 * 180.02562 * 8 6 5 30 30 H 1.09000 * 109.47140 * 300.00252 * 8 6 5 31 31 H 1.09004 * 109.47457 * 60.00221 * 10 9 6 32 32 H 1.09001 * 109.46615 * 179.97438 * 10 9 6 33 33 H 1.08990 * 109.47358 * 299.99539 * 10 9 6 34 34 H 1.08999 * 109.47709 * 59.99831 * 13 11 9 35 35 H 1.09002 * 109.47114 * 180.02562 * 13 11 9 36 36 H 1.08996 * 109.47312 * 299.99550 * 13 11 9 37 37 H 0.96996 * 119.99953 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0055 5 6 3.9751 -0.4476 0.0008 6 6 5.3861 -0.9769 0.0021 7 1 6.0652 -0.2002 0.3538 8 6 5.7768 -1.3910 -1.4180 9 7 5.4713 -2.1420 0.8928 10 6 5.0129 -1.8039 2.2469 11 6 6.8357 -2.6854 0.9196 12 1 7.1908 -2.8265 -0.1012 13 6 7.7593 -1.7089 1.6505 14 6 6.8348 -4.0098 1.6387 15 1 5.9129 -4.4077 2.0364 16 6 8.0111 -4.7129 1.7899 17 7 8.0105 -5.8686 2.4179 18 14 9.6058 -4.0243 1.1027 19 1 10.2664 -3.1832 2.1329 20 1 10.5063 -5.1433 0.7255 21 1 9.3126 -3.1991 -0.0965 22 16 2.5210 -1.4371 0.0006 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8668 2.0895 -0.0004 27 1 4.3720 1.6351 0.0104 28 1 5.7135 -0.5265 -2.0790 29 1 6.7972 -1.7742 -1.4171 30 1 5.0977 -2.1676 -1.7698 31 1 3.9761 -1.4697 2.2067 32 1 5.0860 -2.6843 2.8855 33 1 5.6360 -1.0073 2.6531 34 1 7.4043 -1.5678 2.6714 35 1 8.7719 -2.1120 1.6701 36 1 7.7600 -0.7510 1.1305 37 1 8.8380 -6.3634 2.5239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395726066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:12 Heat of formation + Delta-G solvation = 43.129470 kcal Electronic energy + Delta-G solvation = -17026.812891 eV Core-core repulsion = 14510.269935 eV Total energy + Delta-G solvation = -2516.542955 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -38.61148 -37.15188 -33.38825 -31.91843 -30.44103 -29.40215 -26.34457 -25.22181 -24.48438 -23.04845 -21.72472 -18.95844 -18.66065 -16.86526 -16.23898 -15.55417 -14.86540 -14.59240 -14.12568 -13.71519 -13.55187 -13.32716 -13.03199 -12.46488 -12.21974 -12.19006 -12.12466 -11.75025 -11.62815 -11.42203 -11.31951 -11.03181 -10.87231 -10.68741 -10.31121 -10.23736 -9.91550 -9.51187 -9.03056 -8.57192 -8.20467 -8.10657 -7.38435 -6.05787 -4.03310 1.23270 1.90060 2.36909 2.92611 3.25109 3.34626 3.37796 4.39395 4.69404 4.94871 5.05620 5.26110 5.27611 5.47567 5.55631 5.63718 5.70083 5.76150 5.90603 5.97192 6.14778 6.19387 6.23452 6.28966 6.30209 6.35682 6.47540 6.56576 6.58916 6.68648 6.77633 6.89480 7.18123 7.64295 7.91771 8.04971 8.66239 9.02733 9.56277 11.07405 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.040274 B = 0.005853 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.064842 B = 4782.604951 C = 5057.786671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.211 4.211 3 C -0.141 4.141 4 C -0.154 4.154 5 C -0.149 4.149 6 C 0.139 3.861 7 H 0.052 0.948 8 C -0.141 4.141 9 N -0.517 5.517 10 C 0.029 3.971 11 C 0.178 3.822 12 H 0.046 0.954 13 C -0.187 4.187 14 C -0.498 4.498 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.900 5.900 18 Si 0.885 3.115 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.269 1.269 22 S 0.153 5.847 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.017 0.983 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.027 0.973 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 13.185 -5.556 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.329 4.329 3 C -0.171 4.171 4 C -0.184 4.184 5 C -0.267 4.267 6 C 0.029 3.971 7 H 0.069 0.931 8 C -0.199 4.199 9 N -0.240 5.240 10 C -0.120 4.120 11 C 0.070 3.930 12 H 0.064 0.936 13 C -0.246 4.246 14 C -0.537 4.537 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.194 1.194 22 S 0.418 5.582 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.767 11.089 -5.687 16.469 hybrid contribution 1.955 2.578 0.133 3.238 sum -8.812 13.667 -5.554 17.184 Atomic orbital electron populations 1.20242 0.88437 1.02558 1.02312 1.24668 0.99946 0.97430 1.10848 1.19876 0.92826 0.98816 1.05627 1.19967 0.96051 0.95750 1.06644 1.24629 0.98920 0.96092 1.07101 1.20142 0.88572 0.93128 0.95269 0.93083 1.21897 1.02584 1.01116 0.94289 1.62319 1.26340 1.26456 1.08913 1.22366 0.98161 1.00657 0.90797 1.19867 0.82646 0.93626 0.96815 0.93608 1.22828 1.01187 0.98809 1.01772 1.20914 0.96180 1.01275 1.35303 0.89978 1.24904 0.98582 0.94788 0.94912 1.69879 1.27513 1.13945 1.42498 0.86910 0.84103 0.77650 0.79757 1.20842 1.22439 1.19406 1.84609 0.94968 1.07240 1.71376 0.91669 0.91095 0.91144 0.85278 0.85118 0.92895 0.91420 0.91647 0.93120 0.90036 0.96502 0.92400 0.93665 0.95384 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.38 36.01 0.37 -0.36 16 2 C -0.21 -2.70 6.51 -36.00 -0.23 -2.93 16 3 C -0.14 -1.78 10.05 -41.21 -0.41 -2.20 16 4 C -0.15 -2.15 10.04 -41.21 -0.41 -2.56 16 5 C -0.15 -2.35 4.09 -36.01 -0.15 -2.50 16 6 C 0.14 2.42 2.30 -68.86 -0.16 2.26 16 7 H 0.05 0.89 6.60 -51.93 -0.34 0.54 16 8 C -0.14 -2.30 8.97 37.16 0.33 -1.97 16 9 N -0.52 -10.59 4.35 -229.69 -1.00 -11.59 16 10 C 0.03 0.56 8.31 60.07 0.50 1.06 16 11 C 0.18 4.13 1.71 -68.87 -0.12 4.01 16 12 H 0.05 1.10 4.89 -51.93 -0.25 0.84 16 13 C -0.19 -4.06 7.92 37.15 0.29 -3.77 16 14 C -0.50 -13.77 8.49 -34.44 -0.29 -14.06 16 15 H 0.08 2.49 7.37 -52.48 -0.39 2.10 16 16 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 17 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 18 Si 0.88 21.78 24.37 -169.99 -4.14 17.64 16 19 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 20 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 21 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 22 S 0.15 2.31 21.92 -107.50 -2.36 -0.04 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.17 6.20 -51.93 -0.32 0.84 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.91 6.05 -51.93 -0.31 0.59 16 32 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 33 H 0.02 0.31 6.45 -51.93 -0.34 -0.02 16 34 H 0.06 1.24 6.41 -51.93 -0.33 0.91 16 35 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 36 H 0.03 0.53 6.69 -51.93 -0.35 0.18 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -29.49 295.14 -7.95 -37.44 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.30 Total: -0.23 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -0.37 Total: -21.13 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.23 Total: -38.12 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.36 Total: -0.04 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.49 -7.95 -37.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395726066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.571 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds