Wall clock time and date at job start Mon Mar 30 2020 07:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33392 * 125.19788 * 2 1 4 4 C 1.38428 * 114.91464 * 179.75016 * 3 2 1 5 5 C 1.33384 * 114.92494 * 0.43293 * 4 3 2 6 6 C 1.50699 * 125.20431 * 179.85805 * 5 4 3 7 7 H 1.09000 * 109.47247 * 19.71897 * 6 5 4 8 8 C 1.52997 * 109.47265 * 259.71711 * 6 5 4 9 9 N 1.46906 * 109.47140 * 139.71876 * 6 5 4 10 10 C 1.46902 * 110.99573 * 303.95370 * 9 6 5 11 11 C 1.46898 * 110.99888 * 180.02562 * 9 6 5 12 12 H 1.08999 * 109.46988 * 309.99510 * 11 9 6 13 13 C 1.52993 * 109.47078 * 70.00120 * 11 9 6 14 14 C 1.50702 * 109.46796 * 189.99926 * 11 9 6 15 15 H 1.08003 * 119.99822 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99809 * 180.02562 * 14 11 9 17 17 N 1.31523 * 120.00246 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 120.00116 * 359.97438 * 16 14 11 19 19 H 1.48496 * 109.47222 * 90.00275 * 18 16 14 20 20 H 1.48496 * 109.47118 * 210.00206 * 18 16 14 21 21 H 1.48501 * 109.47094 * 329.99916 * 18 16 14 22 22 S 1.75876 * 125.20520 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46978 * 299.99876 * 1 2 3 25 25 H 1.09000 * 109.47404 * 59.99742 * 1 2 3 26 26 H 1.07996 * 122.54433 * 359.97438 * 3 2 1 27 27 H 1.08006 * 122.53784 * 180.27360 * 4 3 2 28 28 H 1.09001 * 109.47230 * 59.99396 * 8 6 5 29 29 H 1.09001 * 109.47375 * 180.02562 * 8 6 5 30 30 H 1.09000 * 109.47140 * 300.00252 * 8 6 5 31 31 H 1.09004 * 109.47457 * 60.00221 * 10 9 6 32 32 H 1.09001 * 109.46615 * 179.97438 * 10 9 6 33 33 H 1.08990 * 109.47358 * 299.99539 * 10 9 6 34 34 H 1.08999 * 109.47709 * 59.99831 * 13 11 9 35 35 H 1.09002 * 109.47114 * 180.02562 * 13 11 9 36 36 H 1.08996 * 109.47312 * 299.99550 * 13 11 9 37 37 H 0.96996 * 119.99953 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0055 5 6 3.9751 -0.4476 0.0008 6 6 5.3861 -0.9769 0.0021 7 1 6.0652 -0.2002 0.3538 8 6 5.7768 -1.3910 -1.4180 9 7 5.4713 -2.1420 0.8928 10 6 5.0129 -1.8039 2.2469 11 6 6.8357 -2.6854 0.9196 12 1 7.1908 -2.8265 -0.1012 13 6 7.7593 -1.7089 1.6505 14 6 6.8348 -4.0098 1.6387 15 1 5.9129 -4.4077 2.0364 16 6 8.0111 -4.7129 1.7899 17 7 8.0105 -5.8686 2.4179 18 14 9.6058 -4.0243 1.1027 19 1 10.2664 -3.1832 2.1329 20 1 10.5063 -5.1433 0.7255 21 1 9.3126 -3.1991 -0.0965 22 16 2.5210 -1.4371 0.0006 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8668 2.0895 -0.0004 27 1 4.3720 1.6351 0.0104 28 1 5.7135 -0.5265 -2.0790 29 1 6.7972 -1.7742 -1.4171 30 1 5.0977 -2.1676 -1.7698 31 1 3.9761 -1.4697 2.2067 32 1 5.0860 -2.6843 2.8855 33 1 5.6360 -1.0073 2.6531 34 1 7.4043 -1.5678 2.6714 35 1 8.7719 -2.1120 1.6701 36 1 7.7600 -0.7510 1.1305 37 1 8.8380 -6.3634 2.5239 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395726066.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:10 Heat of formation + Delta-G solvation = 24.630057 kcal Electronic energy + Delta-G solvation = -17027.615085 eV Core-core repulsion = 14510.269935 eV Total energy + Delta-G solvation = -2517.345150 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.01688 -38.39254 -35.12548 -33.53773 -31.65673 -31.06397 -27.47253 -27.16848 -26.08230 -24.18011 -23.12048 -20.62802 -19.75069 -18.77381 -17.57271 -17.16649 -16.30925 -16.09275 -15.59215 -15.11370 -14.93858 -14.62219 -14.27542 -13.97106 -13.84321 -13.47518 -13.34697 -13.14278 -13.09082 -12.83000 -12.63676 -12.59304 -12.29261 -12.13063 -12.05309 -11.66448 -11.38897 -11.38233 -11.03323 -10.72678 -9.28461 -9.22898 -8.97706 -8.25862 -6.27776 0.17040 0.81533 1.29879 1.30047 1.35483 1.45486 1.90522 2.32774 3.07916 3.20312 3.79717 4.08693 4.25353 4.30696 4.40003 4.48968 4.51871 4.59562 4.62113 4.68844 4.75135 4.80666 4.82958 4.87144 4.93634 5.09782 5.15398 5.19695 5.25811 5.31953 5.38980 5.47291 5.66915 5.72379 6.05608 6.38702 6.69586 6.78169 7.36125 8.91222 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.040274 B = 0.005853 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.064842 B = 4782.604951 C = 5057.786671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.195 4.195 3 C -0.148 4.148 4 C -0.140 4.140 5 C -0.174 4.174 6 C 0.142 3.858 7 H 0.059 0.941 8 C -0.138 4.138 9 N -0.531 5.531 10 C 0.040 3.960 11 C 0.182 3.818 12 H 0.045 0.955 13 C -0.182 4.182 14 C -0.498 4.498 15 H 0.036 0.964 16 C 0.012 3.988 17 N -0.950 5.950 18 Si 0.948 3.052 19 H -0.270 1.270 20 H -0.300 1.300 21 H -0.246 1.246 22 S 0.095 5.905 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.159 0.841 27 H 0.150 0.850 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.026 0.974 34 H 0.053 0.947 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 16.547 -6.774 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.313 4.313 3 C -0.177 4.177 4 C -0.170 4.170 5 C -0.291 4.291 6 C 0.032 3.968 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.255 5.255 10 C -0.109 4.109 11 C 0.074 3.926 12 H 0.063 0.937 13 C -0.241 4.241 14 C -0.537 4.537 15 H 0.054 0.946 16 C -0.185 4.185 17 N -0.591 5.591 18 Si 0.775 3.225 19 H -0.196 1.196 20 H -0.228 1.228 21 H -0.170 1.170 22 S 0.359 5.641 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.177 0.823 27 H 0.168 0.832 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.018 14.481 -6.916 19.466 hybrid contribution 1.830 1.563 0.521 2.463 sum -9.188 16.045 -6.395 19.564 Atomic orbital electron populations 1.20387 0.86145 1.03212 1.03984 1.25039 1.01251 0.95789 1.09211 1.20189 0.92256 1.00076 1.05224 1.20281 0.97196 0.95311 1.04242 1.24408 0.97801 0.96673 1.10247 1.20146 0.90109 0.91785 0.94723 0.92362 1.21877 1.01417 1.01891 0.94369 1.62167 1.24661 1.28945 1.09722 1.22209 0.99281 0.99275 0.90104 1.19641 0.84814 0.92083 0.96028 0.93687 1.22700 0.99904 0.99747 1.01713 1.21152 0.94422 1.03342 1.34774 0.94551 1.25745 1.02447 0.94969 0.95355 1.70042 1.28571 1.15819 1.44707 0.85874 0.79329 0.77201 0.80062 1.19608 1.22754 1.16987 1.84824 0.96636 1.09870 1.72721 0.91637 0.89465 0.89176 0.82320 0.83243 0.90155 0.92484 0.92873 0.91617 0.93344 0.95600 0.92817 0.94419 0.92146 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.38 71.24 0.74 -0.52 16 2 C -0.20 -4.47 6.51 24.59 0.16 -4.31 16 3 C -0.15 -3.19 10.05 21.22 0.21 -2.98 16 4 C -0.14 -3.43 10.04 21.22 0.21 -3.21 16 5 C -0.17 -5.13 4.09 24.59 0.10 -5.03 16 6 C 0.14 4.68 2.30 44.17 0.10 4.78 16 7 H 0.06 1.84 6.60 -2.39 -0.02 1.82 16 8 C -0.14 -4.26 8.97 71.98 0.65 -3.61 16 9 N -0.53 -21.70 4.35 -880.60 -3.83 -25.53 16 10 C 0.04 1.57 8.31 127.69 1.06 2.63 16 11 C 0.18 8.40 1.71 44.17 0.08 8.48 16 12 H 0.05 2.10 4.89 -2.39 -0.01 2.09 16 13 C -0.18 -7.53 7.92 71.98 0.57 -6.96 16 14 C -0.50 -28.46 8.49 25.60 0.22 -28.24 16 15 H 0.04 2.35 7.37 -2.91 -0.02 2.33 16 16 C 0.01 0.67 5.45 84.65 0.46 1.13 16 17 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 18 Si 0.95 44.77 24.37 68.60 1.67 46.44 16 19 H -0.27 -12.18 6.87 99.48 0.68 -11.50 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 21 H -0.25 -10.62 6.53 99.48 0.65 -9.98 16 22 S 0.10 2.81 21.92 -56.49 -1.24 1.57 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 27 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.06 1.86 6.20 -2.39 -0.01 1.84 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.36 6.05 -2.38 -0.01 2.35 16 32 H 0.05 2.19 6.76 -2.39 -0.02 2.17 16 33 H 0.03 0.95 6.45 -2.39 -0.02 0.93 16 34 H 0.05 2.23 6.41 -2.39 -0.02 2.22 16 35 H 0.04 1.61 3.27 -2.39 -0.01 1.60 16 36 H 0.06 2.09 6.69 -2.39 -0.02 2.08 16 37 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -65.47 295.14 2.44 -63.04 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.98 Total: 11.84 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 4.56 Total: -37.83 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -3.53 Total: -85.06 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.67 Total: 46.44 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.24 Total: 1.57 kcal Total: -65.47 2.44 -63.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395726066.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.667 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds