Wall clock time and date at job start Mon Mar 30 2020 07:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 S 1.75884 * 125.20030 * 2 1 4 4 C 1.75882 * 90.96776 * 180.02562 * 3 2 1 5 5 C 1.33387 * 109.59439 * 0.02562 * 4 3 2 6 6 C 1.50703 * 122.53794 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47107 * 260.02397 * 6 5 4 8 8 C 1.46904 * 111.00029 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46950 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47071 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47153 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99780 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99793 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00052 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00014 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47121 * 60.00049 * 15 13 11 17 17 H 1.48506 * 109.47165 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47240 * 300.00130 * 15 13 11 19 19 C 1.33385 * 125.20311 * 180.31334 * 2 1 3 20 20 C 1.50698 * 122.54398 * 359.97027 * 19 2 1 21 21 H 1.08998 * 109.46947 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47218 * 120.02502 * 1 2 3 23 23 H 1.09002 * 109.46908 * 240.02150 * 1 2 3 24 24 H 1.08002 * 125.19923 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47152 * 140.02485 * 6 5 4 26 26 H 1.09001 * 109.46980 * 20.02585 * 6 5 4 27 27 H 1.00908 * 110.99847 * 56.05051 * 7 6 5 28 28 H 1.08995 * 109.47167 * 300.00240 * 8 7 6 29 29 H 1.09003 * 109.46442 * 60.00214 * 8 7 6 30 30 H 1.09005 * 109.47424 * 300.00229 * 9 8 7 31 31 H 1.09004 * 109.47266 * 59.99979 * 9 8 7 32 32 H 1.08995 * 109.47051 * 300.00167 * 10 9 8 33 33 H 1.09003 * 109.46901 * 60.00330 * 10 9 8 34 34 H 0.97005 * 119.99618 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.47179 * 270.26246 * 20 19 2 36 36 H 1.09000 * 109.46764 * 30.25359 * 20 19 2 37 37 H 1.08996 * 109.47784 * 150.25431 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5210 1.4372 0.0000 4 6 3.9751 0.4478 -0.0008 5 6 3.6380 -0.8428 -0.0016 6 6 4.6624 -1.9481 -0.0018 7 7 4.8197 -2.4696 -1.3661 8 6 5.8134 -3.5509 -1.4050 9 6 5.9497 -4.0668 -2.8389 10 6 6.9842 -5.1934 -2.8794 11 6 7.1180 -5.7020 -4.2917 12 1 6.5243 -5.2656 -5.0813 13 6 7.9976 -6.7250 -4.5755 14 7 8.7195 -7.2574 -3.6136 15 14 8.1630 -7.3560 -6.3259 16 1 8.6031 -6.2483 -7.2118 17 1 9.1672 -8.4493 -6.3651 18 1 6.8508 -7.8713 -6.7924 19 6 2.2760 -1.0899 -0.0060 20 6 1.7053 -2.4846 -0.0129 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3634 -0.5142 -0.8898 23 1 -0.3633 -0.5135 0.8902 24 1 4.9863 0.8272 -0.0015 25 1 4.3316 -2.7503 0.6579 26 1 5.6174 -1.5584 0.3506 27 1 5.0636 -1.7315 -2.0095 28 1 6.7763 -3.1720 -1.0625 29 1 5.4909 -4.3642 -0.7549 30 1 4.9869 -4.4456 -3.1819 31 1 6.2723 -3.2532 -3.4887 32 1 7.9470 -4.8150 -2.5363 33 1 6.6610 -6.0069 -2.2298 34 1 9.3387 -7.9769 -3.8134 35 1 1.5638 -2.8244 1.0131 36 1 0.7460 -2.4820 -0.5303 37 1 2.3932 -3.1562 -0.5265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399814391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:48 Heat of formation + Delta-G solvation = 3.342247 kcal Electronic energy + Delta-G solvation = -15752.635888 eV Core-core repulsion = 13234.367629 eV Total energy + Delta-G solvation = -2518.268259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.11265 -36.09051 -33.63865 -32.46484 -30.87440 -29.53961 -27.29301 -25.41185 -24.48049 -22.21112 -21.15512 -20.05269 -18.12878 -17.35766 -16.26501 -15.33477 -15.09383 -14.86141 -14.44848 -13.94825 -13.89263 -13.37489 -13.10442 -12.80456 -12.67717 -12.33524 -12.09362 -11.92398 -11.73089 -11.49804 -11.33006 -11.23350 -10.79590 -10.76080 -10.55111 -10.50029 -9.66925 -9.33506 -9.05509 -8.56386 -8.33103 -8.31737 -8.12959 -5.97284 -3.99355 0.93040 1.57647 1.90879 2.58659 3.35546 3.39467 3.42430 4.46801 4.61970 4.66072 4.90311 5.04440 5.23064 5.32197 5.36073 5.38447 5.46482 5.55578 5.64589 5.71035 5.75863 5.81600 5.91720 6.03676 6.19080 6.33968 6.46899 6.58501 6.74095 6.78229 7.16137 7.34356 7.63444 7.71021 7.86289 8.03284 8.46611 9.07742 9.64508 11.14155 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.041864 B = 0.003210 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.675889 B = 8721.646458 C = 8852.128841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.190 4.190 3 S 0.075 5.925 4 C -0.213 4.213 5 C -0.083 4.083 6 C 0.115 3.885 7 N -0.684 5.684 8 C 0.059 3.941 9 C -0.106 4.106 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.082 4.082 20 C -0.098 4.098 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.161 0.839 25 H 0.081 0.919 26 H 0.034 0.966 27 H 0.339 0.661 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 15.762 10.005 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.307 4.307 3 S 0.341 5.659 4 C -0.349 4.349 5 C -0.096 4.096 6 C -0.016 4.016 7 N -0.315 5.315 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.094 4.094 20 C -0.157 4.157 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.178 0.822 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.156 0.844 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.867 16.797 10.098 24.599 hybrid contribution 1.457 -1.241 -0.839 2.089 sum -13.410 15.556 9.259 22.529 Atomic orbital electron populations 1.20264 0.88052 1.02374 1.02818 1.24211 0.99655 0.95042 1.11759 1.84085 0.97227 1.09969 1.74663 1.25379 1.01655 0.96187 1.11651 1.18788 0.94475 0.93933 1.02437 1.20593 0.94573 0.94251 0.92226 1.60573 1.51094 1.13917 1.05884 1.22152 0.91660 0.93052 1.00090 1.21620 1.00923 0.99323 0.92588 1.19060 0.93125 0.92353 0.96976 1.21230 1.22450 1.17829 0.94257 0.92722 1.25029 0.95775 0.96628 0.97090 1.69962 1.25732 1.26059 1.31917 0.86655 0.77817 0.78441 0.85066 1.20276 1.21320 1.20204 1.18660 0.92119 0.96360 1.02293 1.20574 1.01177 0.92151 1.01798 0.91830 0.90617 0.90810 0.82183 0.90090 0.94751 0.84393 0.95754 0.91392 0.92537 0.93693 0.96842 0.96569 0.92994 0.91800 0.91958 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 9.46 36.01 0.34 -0.27 16 2 C -0.19 -2.05 6.51 -36.00 -0.23 -2.29 16 3 S 0.07 0.78 23.33 -107.50 -2.51 -1.73 16 4 C -0.21 -2.39 10.95 29.04 0.32 -2.07 16 5 C -0.08 -1.02 5.31 -106.25 -0.56 -1.59 16 6 C 0.11 1.46 5.13 -4.98 -0.03 1.44 16 7 N -0.68 -10.09 6.22 -115.05 -0.72 -10.80 16 8 C 0.06 1.02 5.68 -3.82 -0.02 0.99 16 9 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 15 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 C -0.08 -0.98 5.80 -106.25 -0.62 -1.60 16 20 C -0.10 -1.06 9.33 36.00 0.34 -0.73 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 25 H 0.08 1.02 7.70 -51.93 -0.40 0.62 16 26 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 27 H 0.34 4.89 8.72 -39.29 -0.34 4.55 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.60 7.34 -51.93 -0.38 0.22 16 37 H 0.09 1.08 7.11 -51.93 -0.37 0.71 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -30.37 321.06 -9.92 -40.29 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.09 Total: -1.15 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -1.16 Total: -21.79 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.02 Total: -37.37 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.37 -9.92 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399814391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.634 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds