Wall clock time and date at job start Mon Mar 30 2020 07:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 S 1.75884 * 125.20030 * 2 1 4 4 C 1.75882 * 90.96776 * 180.02562 * 3 2 1 5 5 C 1.33387 * 109.59439 * 0.02562 * 4 3 2 6 6 C 1.50703 * 122.53794 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47107 * 260.02397 * 6 5 4 8 8 C 1.46904 * 111.00029 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46950 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47071 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47153 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99780 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99793 * 180.02562 * 11 10 9 14 14 N 1.31521 * 120.00052 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00014 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47121 * 60.00049 * 15 13 11 17 17 H 1.48506 * 109.47165 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47240 * 300.00130 * 15 13 11 19 19 C 1.33385 * 125.20311 * 180.31334 * 2 1 3 20 20 C 1.50698 * 122.54398 * 359.97027 * 19 2 1 21 21 H 1.08998 * 109.46947 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47218 * 120.02502 * 1 2 3 23 23 H 1.09002 * 109.46908 * 240.02150 * 1 2 3 24 24 H 1.08002 * 125.19923 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47152 * 140.02485 * 6 5 4 26 26 H 1.09001 * 109.46980 * 20.02585 * 6 5 4 27 27 H 1.00908 * 110.99847 * 56.05051 * 7 6 5 28 28 H 1.08995 * 109.47167 * 300.00240 * 8 7 6 29 29 H 1.09003 * 109.46442 * 60.00214 * 8 7 6 30 30 H 1.09005 * 109.47424 * 300.00229 * 9 8 7 31 31 H 1.09004 * 109.47266 * 59.99979 * 9 8 7 32 32 H 1.08995 * 109.47051 * 300.00167 * 10 9 8 33 33 H 1.09003 * 109.46901 * 60.00330 * 10 9 8 34 34 H 0.97005 * 119.99618 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.47179 * 270.26246 * 20 19 2 36 36 H 1.09000 * 109.46764 * 30.25359 * 20 19 2 37 37 H 1.08996 * 109.47784 * 150.25431 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5210 1.4372 0.0000 4 6 3.9751 0.4478 -0.0008 5 6 3.6380 -0.8428 -0.0016 6 6 4.6624 -1.9481 -0.0018 7 7 4.8197 -2.4696 -1.3661 8 6 5.8134 -3.5509 -1.4050 9 6 5.9497 -4.0668 -2.8389 10 6 6.9842 -5.1934 -2.8794 11 6 7.1180 -5.7020 -4.2917 12 1 6.5243 -5.2656 -5.0813 13 6 7.9976 -6.7250 -4.5755 14 7 8.7195 -7.2574 -3.6136 15 14 8.1630 -7.3560 -6.3259 16 1 8.6031 -6.2483 -7.2118 17 1 9.1672 -8.4493 -6.3651 18 1 6.8508 -7.8713 -6.7924 19 6 2.2760 -1.0899 -0.0060 20 6 1.7053 -2.4846 -0.0129 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3634 -0.5142 -0.8898 23 1 -0.3633 -0.5135 0.8902 24 1 4.9863 0.8272 -0.0015 25 1 4.3316 -2.7503 0.6579 26 1 5.6174 -1.5584 0.3506 27 1 5.0636 -1.7315 -2.0095 28 1 6.7763 -3.1720 -1.0625 29 1 5.4909 -4.3642 -0.7549 30 1 4.9869 -4.4456 -3.1819 31 1 6.2723 -3.2532 -3.4887 32 1 7.9470 -4.8150 -2.5363 33 1 6.6610 -6.0069 -2.2298 34 1 9.3387 -7.9769 -3.8134 35 1 1.5638 -2.8244 1.0131 36 1 0.7460 -2.4820 -0.5303 37 1 2.3932 -3.1562 -0.5265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399814391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:47 Heat of formation + Delta-G solvation = -13.996102 kcal Electronic energy + Delta-G solvation = -15753.387735 eV Core-core repulsion = 13234.367629 eV Total energy + Delta-G solvation = -2519.020106 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.00373 -37.45111 -35.45049 -33.76145 -32.43263 -30.34133 -28.82921 -26.69160 -25.62442 -23.89678 -22.23091 -21.63941 -18.97535 -18.51236 -18.20714 -16.62482 -16.56262 -16.03432 -15.80447 -15.25696 -14.95190 -14.48808 -14.31233 -13.96403 -13.66389 -13.53931 -13.46895 -13.22172 -12.91007 -12.68059 -12.62804 -12.48134 -12.43839 -12.24366 -12.12759 -11.60187 -11.51752 -11.37240 -11.10141 -10.54338 -9.46612 -9.30620 -9.13255 -8.19690 -6.30805 0.08674 0.76513 1.06916 1.40329 1.43632 1.51569 1.69220 2.41643 3.13301 3.40170 3.84787 4.02773 4.23838 4.28807 4.35632 4.46947 4.51528 4.60335 4.70755 4.73268 4.75296 4.80658 4.91479 4.99395 5.10923 5.12260 5.19384 5.25160 5.29946 5.52350 5.61901 5.72541 5.76179 5.86607 6.04577 6.27733 6.44547 6.86081 7.38407 8.92041 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.041864 B = 0.003210 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.675889 B = 8721.646458 C = 8852.128841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.194 4.194 3 S 0.094 5.906 4 C -0.220 4.220 5 C -0.098 4.098 6 C 0.120 3.880 7 N -0.682 5.682 8 C 0.073 3.927 9 C -0.092 4.092 10 C 0.026 3.974 11 C -0.545 4.545 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.105 4.105 20 C -0.093 4.093 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.173 0.827 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.342 0.658 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.048 0.952 32 H -0.009 1.009 33 H -0.008 1.008 34 H 0.264 0.736 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.295 16.762 9.439 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.311 4.311 3 S 0.360 5.640 4 C -0.356 4.356 5 C -0.111 4.111 6 C -0.011 4.011 7 N -0.313 5.313 8 C -0.056 4.056 9 C -0.130 4.130 10 C -0.012 4.012 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.116 4.116 20 C -0.152 4.152 21 H 0.093 0.907 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.190 0.810 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.160 0.840 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.985 17.816 9.538 25.766 hybrid contribution 1.775 -1.493 -0.614 2.399 sum -14.210 16.323 8.924 23.409 Atomic orbital electron populations 1.20370 0.86235 1.03404 1.03608 1.24602 1.01046 0.94860 1.10560 1.84011 0.96519 1.09472 1.73994 1.25616 1.02786 0.96186 1.10993 1.18783 0.94567 0.94012 1.03767 1.20552 0.95218 0.94589 0.90779 1.60484 1.49779 1.13660 1.07385 1.21843 0.92443 0.93898 0.97395 1.21366 0.98818 0.97593 0.95193 1.18963 0.93476 0.93269 0.95471 1.21687 1.22769 1.18364 0.95476 0.92292 1.25994 0.95245 0.96784 1.01871 1.70095 1.26360 1.26605 1.34373 0.85498 0.78201 0.78022 0.79314 1.19173 1.20752 1.19142 1.18825 0.92238 0.97080 1.03491 1.20522 1.01058 0.91394 1.02251 0.90713 0.90059 0.89676 0.80980 0.90156 0.94123 0.84044 0.95783 0.91678 0.92908 0.93312 0.99093 0.98924 0.92748 0.90904 0.90937 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.46 71.24 0.67 -0.40 16 2 C -0.19 -3.84 6.51 24.59 0.16 -3.68 16 3 S 0.09 1.78 23.33 -56.49 -1.32 0.46 16 4 C -0.22 -4.61 10.95 66.72 0.73 -3.88 16 5 C -0.10 -2.30 5.31 -20.92 -0.11 -2.41 16 6 C 0.12 2.95 5.13 85.56 0.44 3.39 16 7 N -0.68 -19.67 6.22 -517.92 -3.22 -22.89 16 8 C 0.07 2.52 5.68 86.30 0.49 3.01 16 9 C -0.09 -3.85 5.41 30.59 0.17 -3.69 16 10 C 0.03 1.39 4.97 29.85 0.15 1.54 16 11 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 13 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 14 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 15 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C -0.10 -2.36 5.80 -20.92 -0.12 -2.48 16 20 C -0.09 -1.93 9.33 71.24 0.66 -1.27 16 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.08 1.05 7.92 -2.39 -0.02 1.03 16 23 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 25 H 0.08 1.98 7.70 -2.39 -0.02 1.96 16 26 H 0.04 0.95 8.07 -2.39 -0.02 0.94 16 27 H 0.34 9.54 8.72 -89.69 -0.78 8.76 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 35 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.07 1.30 7.34 -2.39 -0.02 1.29 16 37 H 0.07 1.64 7.11 -2.39 -0.02 1.62 16 Total: -1.00 -64.46 321.06 1.96 -62.50 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.26 Total: 11.38 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 3.94 Total: -40.95 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.94 Total: -80.22 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -1.32 Total: 0.46 kcal Total: -64.46 1.96 -62.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399814391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.499 kcal (2) G-P(sol) polarization free energy of solvation -64.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds