Wall clock time and date at job start Mon Mar 30 2020 06:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00327 * 2 1 4 4 H 1.48499 * 109.46838 * 239.99932 * 3 2 1 5 5 H 1.48497 * 109.46786 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46636 * 120.00027 * 3 2 1 7 7 C 1.37885 * 119.99407 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99333 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47000 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.47155 * 179.97438 * 11 10 9 13 13 C 1.35901 * 117.00068 * 180.02562 * 12 11 10 14 14 C 1.38767 * 120.04088 * 0.02562 * 13 12 11 15 15 C 1.38139 * 119.99202 * 179.97438 * 14 13 12 16 16 C 1.38252 * 120.08125 * 359.72789 * 15 14 13 17 17 C 1.50693 * 119.95739 * 180.29967 * 16 15 14 18 18 N 1.46899 * 109.47100 * 260.24924 * 17 16 15 19 19 C 1.38479 * 120.07990 * 0.54383 * 16 15 14 20 20 F 1.35104 * 119.99308 * 179.72616 * 19 16 15 21 21 C 1.38382 * 120.00772 * 359.45908 * 19 16 15 22 22 H 0.97000 * 119.99789 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47091 * 60.00124 * 9 7 2 24 24 H 1.09009 * 109.46903 * 300.00076 * 9 7 2 25 25 H 1.09003 * 109.47094 * 60.00279 * 10 9 7 26 26 H 1.09001 * 109.47288 * 299.99981 * 10 9 7 27 27 H 1.09000 * 109.47414 * 59.99809 * 11 10 9 28 28 H 1.08998 * 109.47490 * 299.99740 * 11 10 9 29 29 H 1.07996 * 120.00641 * 359.97438 * 14 13 12 30 30 H 1.08007 * 119.95527 * 179.97438 * 15 14 13 31 31 H 1.08999 * 109.47405 * 20.25016 * 17 16 15 32 32 H 1.08999 * 109.47339 * 140.25172 * 17 16 15 33 33 H 1.00896 * 111.00545 * 180.02562 * 18 17 16 34 34 H 1.00906 * 110.99677 * 303.95197 * 18 17 16 35 35 H 1.07996 * 120.03824 * 180.25066 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 6 1.4800 -4.9871 -0.0020 12 8 2.4086 -6.0733 -0.0024 13 6 1.8891 -7.3291 -0.0034 14 6 0.5135 -7.5119 -0.0046 15 6 -0.0135 -8.7888 -0.0062 16 6 0.8280 -9.8857 -0.0123 17 6 0.2501 -11.2774 -0.0208 18 7 0.2783 -11.8277 1.3409 19 6 2.2012 -9.7071 -0.0054 20 9 3.0219 -10.7803 -0.0058 21 6 2.7329 -8.4295 -0.0038 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8881 25 1 2.8710 -3.6049 0.8891 26 1 2.8725 -3.6041 -0.8909 27 1 0.8537 -5.0447 -0.8922 28 1 0.8530 -5.0450 0.8877 29 1 -0.1450 -6.6559 -0.0043 30 1 -1.0842 -8.9303 -0.0067 31 1 -0.7795 -11.2412 -0.3768 32 1 0.8408 -11.9121 -0.6814 33 1 -0.1039 -12.7612 1.3617 34 1 1.2141 -11.8120 1.7179 35 1 3.8038 -8.2896 -0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403980195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:25 Heat of formation + Delta-G solvation = -80.069460 kcal Electronic energy + Delta-G solvation = -17525.675712 eV Core-core repulsion = 14437.577274 eV Total energy + Delta-G solvation = -3088.098438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.11043 -40.08755 -37.76302 -34.81907 -33.95230 -31.84262 -30.81304 -29.73357 -27.09616 -24.82467 -23.73145 -22.72021 -21.22259 -20.26357 -18.42175 -16.99527 -16.60648 -16.24147 -16.05698 -15.92880 -15.60353 -15.00683 -14.70432 -14.48497 -14.30699 -13.79845 -13.40942 -13.07187 -12.57645 -12.27862 -11.97314 -11.93082 -11.70617 -11.20274 -11.02252 -10.65097 -10.64951 -10.52323 -9.81734 -9.57525 -9.21383 -9.06421 -8.97649 -8.41373 -8.20838 -6.06760 -4.09589 1.03596 1.18135 3.22107 3.30964 3.35236 3.38472 3.45564 4.21015 4.40734 4.42148 4.60062 4.62929 4.84070 5.07554 5.19122 5.29438 5.36840 5.41528 5.45969 5.53584 5.85619 5.86766 5.92331 6.20770 6.27253 6.49213 6.49620 6.69785 6.76814 6.93209 7.09242 7.49007 7.56112 7.66719 7.91417 8.32924 8.96324 9.54929 11.04700 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.057295 B = 0.003166 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.581106 B = 8841.015079 C = 9223.644398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.109 4.109 11 C 0.057 3.943 12 O -0.311 6.311 13 C 0.172 3.828 14 C -0.219 4.219 15 C -0.032 4.032 16 C -0.167 4.167 17 C 0.110 3.890 18 N -0.846 5.846 19 C 0.139 3.861 20 F -0.139 7.139 21 C -0.196 4.196 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.342 0.658 34 H 0.342 0.658 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -21.586 -0.275 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.146 4.146 11 C -0.017 4.017 12 O -0.224 6.224 13 C 0.124 3.876 14 C -0.238 4.238 15 C -0.051 4.051 16 C -0.169 4.169 17 C -0.020 4.020 18 N -0.376 5.376 19 C 0.119 3.881 20 F -0.117 7.117 21 C -0.216 4.216 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.110 -20.824 -0.099 20.825 hybrid contribution 0.994 0.125 -0.398 1.078 sum 0.884 -20.699 -0.497 20.724 Atomic orbital electron populations 1.69948 1.06085 1.26914 1.50500 1.25023 0.94886 0.99363 0.95130 0.86603 0.79551 0.82840 0.78713 1.20159 1.21236 1.20156 1.21143 0.93128 0.90718 1.51124 0.92488 1.19041 0.93797 0.90784 0.97567 1.21741 0.99947 0.90870 1.02089 1.23306 0.92212 0.85018 1.01179 1.86142 1.37534 1.11759 1.86930 1.18743 0.91317 0.85332 0.92174 1.21463 0.94261 0.98919 1.09125 1.20672 0.99651 0.90465 0.94294 1.19591 0.91187 0.96607 1.09494 1.20499 1.00662 0.90928 0.89937 1.58771 1.28746 1.28390 1.21646 1.17099 0.87142 0.82650 1.01210 1.91467 1.72386 1.54060 1.93836 1.20212 1.01093 0.89118 1.11164 0.92819 0.96275 0.96264 0.92097 0.92107 0.92012 0.91974 0.84272 0.84754 0.89816 0.94597 0.84528 0.84529 0.84024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.11 -2.21 5.52 -26.73 -0.15 -2.35 16 11 C 0.06 0.96 4.74 37.16 0.18 1.14 16 12 O -0.31 -5.16 10.14 -19.43 -0.20 -5.35 16 13 C 0.17 2.50 6.68 -39.23 -0.26 2.24 16 14 C -0.22 -2.82 9.04 -39.42 -0.36 -3.18 16 15 C -0.03 -0.36 9.66 -39.61 -0.38 -0.74 16 16 C -0.17 -1.88 5.40 -104.53 -0.56 -2.45 16 17 C 0.11 0.99 6.63 -4.98 -0.03 0.95 16 18 N -0.85 -7.21 9.61 -11.41 -0.11 -7.32 16 19 C 0.14 1.71 7.24 -39.44 -0.29 1.43 16 20 F -0.14 -1.65 16.66 2.25 0.04 -1.61 16 21 C -0.20 -2.63 9.97 -39.37 -0.39 -3.02 16 22 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 0.98 7.66 -51.93 -0.40 0.59 16 28 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 29 H 0.14 1.70 6.30 -52.49 -0.33 1.37 16 30 H 0.13 1.20 8.04 -52.48 -0.42 0.78 16 31 H 0.08 0.65 8.00 -51.93 -0.42 0.23 16 32 H 0.04 0.31 7.94 -51.93 -0.41 -0.10 16 33 H 0.34 2.11 9.08 -39.29 -0.36 1.75 16 34 H 0.34 2.95 8.98 -39.29 -0.35 2.60 16 35 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -29.90 305.31 -7.49 -37.39 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.74 Total: 0.48 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -2.80 Total: -18.86 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.63 Total: -33.02 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.20 Total: -5.35 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.90 -7.49 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403980195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.684 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds