Wall clock time and date at job start Mon Mar 30 2020 06:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00234 * 2 1 4 4 H 1.48504 * 109.47296 * 270.00106 * 3 2 1 5 5 H 1.48501 * 109.46972 * 30.00406 * 3 2 1 6 6 H 1.48505 * 109.47242 * 150.00070 * 3 2 1 7 7 C 1.37879 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00151 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00042 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47149 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.47155 * 180.02562 * 10 9 7 12 12 C 1.35901 * 117.00068 * 180.02562 * 11 10 9 13 13 C 1.38767 * 120.04088 * 0.02562 * 12 11 10 14 14 C 1.38139 * 119.99202 * 179.97438 * 13 12 11 15 15 C 1.38252 * 120.08125 * 359.72789 * 14 13 12 16 16 C 1.50693 * 119.95739 * 180.29967 * 15 14 13 17 17 C 1.52997 * 109.47050 * 265.24762 * 16 15 14 18 18 N 1.46899 * 109.47203 * 180.02562 * 17 16 15 19 19 C 1.38479 * 120.07990 * 0.54383 * 15 14 13 20 20 F 1.35104 * 119.99308 * 179.72616 * 19 15 14 21 21 C 1.38382 * 120.00772 * 359.45908 * 19 15 14 22 22 H 0.97000 * 119.99880 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46893 * 60.00258 * 9 7 2 24 24 H 1.09001 * 109.47340 * 300.00052 * 9 7 2 25 25 H 1.09000 * 109.47414 * 59.99964 * 10 9 7 26 26 H 1.08998 * 109.47490 * 299.99895 * 10 9 7 27 27 H 1.07996 * 120.00641 * 359.97438 * 13 12 11 28 28 H 1.08007 * 119.95527 * 179.97438 * 14 13 12 29 29 H 1.08999 * 109.47458 * 25.25186 * 16 15 14 30 30 H 1.09002 * 109.47256 * 145.25151 * 16 15 14 31 31 H 1.08999 * 109.47336 * 300.00499 * 17 16 15 32 32 H 1.09002 * 109.46773 * 60.00093 * 17 16 15 33 33 H 1.00899 * 111.00065 * 56.04645 * 18 17 16 34 34 H 1.00908 * 110.99941 * 180.02562 * 18 17 16 35 35 H 1.07996 * 120.03824 * 180.25066 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 8 5.4505 -2.6366 -0.0009 12 6 6.0675 -3.8475 -0.0014 13 6 5.3125 -5.0119 -0.0024 14 6 5.9407 -6.2422 -0.0033 15 6 7.3213 -6.3153 -0.0090 16 6 8.0036 -7.6589 -0.0169 17 6 8.3467 -8.0651 1.4177 18 7 9.0124 -9.3745 1.4101 19 6 8.0778 -5.1555 -0.0023 20 9 9.4268 -5.2290 -0.0023 21 6 7.4522 -3.9211 -0.0013 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8746 -0.6801 -0.8911 25 1 3.6578 -3.1507 -0.8907 26 1 3.6586 -3.1503 0.8892 27 1 4.2340 -4.9562 -0.0024 28 1 5.3525 -7.1480 -0.0037 29 1 7.3377 -8.4020 -0.4556 30 1 8.9187 -7.5983 -0.6060 31 1 9.0125 -7.3219 1.8564 32 1 7.4315 -8.1257 2.0068 33 1 9.8293 -9.3614 0.8180 34 1 9.2490 -9.6654 2.3469 35 1 8.0417 -3.0163 -0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404279022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:44 Heat of formation + Delta-G solvation = -96.623067 kcal Electronic energy + Delta-G solvation = -17698.130914 eV Core-core repulsion = 14609.314658 eV Total energy + Delta-G solvation = -3088.816256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.01762 -41.14808 -38.84673 -36.29242 -35.37883 -33.13593 -32.06264 -31.61596 -28.17837 -26.95480 -24.21779 -23.80367 -22.57671 -21.76709 -19.78557 -18.72487 -17.89483 -17.17165 -17.13287 -17.01156 -16.64898 -16.25643 -16.17124 -15.57828 -15.30091 -14.86555 -14.69103 -14.41791 -14.32884 -13.94857 -13.44437 -13.21760 -12.86462 -12.56991 -12.37014 -12.33352 -12.14628 -11.95881 -11.77927 -11.50955 -11.43178 -10.81830 -9.94396 -9.66212 -9.17982 -8.35200 -6.41819 0.07468 0.22159 1.36006 1.37682 1.49734 2.11509 2.32775 2.50276 3.00166 3.29189 3.48868 3.70201 3.90019 4.07194 4.15332 4.20157 4.22324 4.22704 4.33459 4.39606 4.63567 4.65446 4.88013 4.99003 5.01876 5.08567 5.13816 5.27869 5.29601 5.38551 5.50673 5.72795 6.15521 6.17836 6.37754 6.57426 6.64413 7.23574 8.80391 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.047150 B = 0.003652 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.708986 B = 7665.989663 C = 8107.746694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.250 1.250 7 C -0.536 4.536 8 H 0.045 0.955 9 C -0.008 4.008 10 C 0.084 3.916 11 O -0.331 6.331 12 C 0.142 3.858 13 C -0.220 4.220 14 C -0.039 4.039 15 C -0.156 4.156 16 C -0.066 4.066 17 C 0.069 3.931 18 N -0.855 5.855 19 C 0.130 3.870 20 F -0.137 7.137 21 C -0.203 4.203 22 H 0.270 0.730 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.141 0.859 28 H 0.164 0.836 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.347 0.653 34 H 0.351 0.649 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.479 -15.170 1.276 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.174 1.174 7 C -0.574 4.574 8 H 0.063 0.937 9 C -0.045 4.045 10 C 0.010 3.990 11 O -0.245 6.245 12 C 0.096 3.904 13 C -0.239 4.239 14 C -0.057 4.057 15 C -0.158 4.158 16 C -0.103 4.103 17 C -0.062 4.062 18 N -0.386 5.386 19 C 0.111 3.889 20 F -0.115 7.115 21 C -0.223 4.223 22 H 0.079 0.921 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.182 0.818 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.092 0.908 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 17.771 -15.138 0.974 23.365 hybrid contribution 0.667 1.492 0.397 1.682 sum 18.438 -13.646 1.371 22.979 Atomic orbital electron populations 1.70022 1.08087 1.28489 1.51596 1.25856 0.95584 1.03245 0.93724 0.85706 0.79446 0.78478 0.79363 1.19032 1.20607 1.17410 1.21112 0.90469 0.93954 1.51830 0.93666 1.19459 0.94396 0.92822 0.97872 1.22783 0.75195 0.99697 1.01340 1.86048 1.23338 1.27279 1.87790 1.18959 0.91839 0.85161 0.94431 1.21603 1.01394 0.92222 1.08670 1.21016 0.92817 0.97809 0.94044 1.19896 0.94128 0.94434 1.07340 1.20388 1.00794 0.91684 0.97458 1.21692 0.98885 0.89587 0.96082 1.58707 1.33972 1.28567 1.17363 1.17159 0.76667 0.93342 1.01731 1.91468 1.29126 1.97113 1.93816 1.20315 0.92520 0.98164 1.11293 0.92110 0.95425 0.95511 0.91697 0.91723 0.84130 0.81839 0.88729 0.90908 0.96186 0.90847 0.84037 0.83547 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.95 43.53 27.47 68.60 1.88 45.42 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 7 C -0.54 -29.95 9.66 25.60 0.25 -29.70 16 8 H 0.05 2.71 7.99 -2.91 -0.02 2.69 16 9 C -0.01 -0.37 4.41 29.85 0.13 -0.24 16 10 C 0.08 3.27 4.68 71.98 0.34 3.61 16 11 O -0.33 -12.18 10.14 -92.44 -0.94 -13.12 16 12 C 0.14 4.43 6.68 22.50 0.15 4.58 16 13 C -0.22 -5.85 9.04 22.37 0.20 -5.65 16 14 C -0.04 -0.82 9.67 22.25 0.22 -0.61 16 15 C -0.16 -3.32 5.14 -19.81 -0.10 -3.42 16 16 C -0.07 -1.08 5.37 29.84 0.16 -0.92 16 17 C 0.07 1.07 6.77 86.30 0.58 1.66 16 18 N -0.86 -11.04 9.62 -186.72 -1.80 -12.83 16 19 C 0.13 3.24 7.24 22.36 0.16 3.40 16 20 F -0.14 -3.31 16.56 44.97 0.74 -2.57 16 21 C -0.20 -5.72 9.97 22.41 0.22 -5.50 16 22 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 23 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 24 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 25 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 26 H 0.06 2.41 7.66 -2.39 -0.02 2.39 16 27 H 0.14 3.66 6.30 -2.91 -0.02 3.65 16 28 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.09 1.39 8.05 -2.39 -0.02 1.37 16 30 H 0.07 1.19 7.79 -2.39 -0.02 1.17 16 31 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.35 3.69 8.99 -89.69 -0.81 2.88 16 34 H 0.35 3.51 9.08 -89.69 -0.81 2.70 16 35 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -63.40 301.60 2.41 -60.99 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -0.56 Total: 10.83 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 2.77 Total: -31.53 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -1.50 Total: -70.02 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.94 Total: -13.12 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.74 Total: -2.57 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Total: -63.40 2.41 -60.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404279022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.632 kcal (2) G-P(sol) polarization free energy of solvation -63.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds