Wall clock time and date at job start Mon Mar 30 2020 07:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46834 * 2 1 4 4 C 1.52994 * 109.47757 * 120.00447 * 2 1 3 5 5 C 1.52998 * 109.47502 * 174.99946 * 4 2 1 6 6 H 1.09005 * 109.47051 * 54.99832 * 5 4 2 7 7 N 1.46900 * 109.47103 * 295.00140 * 5 4 2 8 8 C 1.46898 * 110.99918 * 154.99890 * 7 5 4 9 9 C 1.50704 * 109.47061 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99903 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00201 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99905 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00334 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46845 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47329 * 119.99973 * 13 11 9 16 16 H 1.48501 * 109.47275 * 240.00265 * 13 11 9 17 17 C 1.50701 * 109.47480 * 174.99695 * 5 4 2 18 18 C 1.33388 * 125.20552 * 260.00736 * 17 5 4 19 19 C 1.38421 * 114.92066 * 180.24956 * 18 17 5 20 20 C 1.33395 * 114.92147 * 359.48238 * 19 18 17 21 21 S 1.75885 * 125.19989 * 79.97263 * 17 5 4 22 22 H 1.09002 * 109.46847 * 299.99453 * 1 2 3 23 23 H 1.08995 * 109.47847 * 59.99322 * 1 2 3 24 24 H 1.09000 * 109.46700 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46847 * 240.00547 * 2 1 3 26 26 H 1.09009 * 109.47488 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47579 * 300.00374 * 3 2 1 28 28 H 1.09002 * 109.46956 * 60.00614 * 3 2 1 29 29 H 1.08999 * 109.47018 * 54.99483 * 4 2 1 30 30 H 1.09009 * 109.46899 * 295.00169 * 4 2 1 31 31 H 1.00896 * 110.99597 * 278.95011 * 7 5 4 32 32 H 1.09006 * 109.47228 * 299.99489 * 8 7 5 33 33 H 1.08999 * 109.47056 * 59.99913 * 8 7 5 34 34 H 0.96999 * 119.99939 * 179.97438 * 12 11 9 35 35 H 1.08002 * 122.53671 * 359.96983 * 18 17 5 36 36 H 1.08001 * 122.54223 * 179.72513 * 19 18 17 37 37 H 1.07998 * 125.20353 * 180.21324 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 1 3.9955 0.1612 1.0525 7 7 3.9490 -1.6894 0.0592 8 6 5.3051 -1.3706 -0.4070 9 6 5.6636 -2.2696 -1.5621 10 1 4.9550 -3.0047 -1.9144 11 6 6.8960 -2.1539 -2.1692 12 7 7.7590 -1.2591 -1.7399 13 14 7.3406 -3.2687 -3.6005 14 1 6.2054 -4.1820 -3.8877 15 1 7.6268 -2.4428 -4.8010 16 1 8.5428 -4.0674 -3.2511 17 6 4.0776 -1.4303 2.4719 18 6 4.6041 -0.7414 3.4856 19 6 5.0123 -1.5090 4.5627 20 6 4.8074 -2.8202 4.4283 21 16 4.0723 -3.1449 2.8637 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6055 -1.7198 1.2950 30 1 1.7517 -0.1584 2.1369 31 1 3.8709 -2.6651 0.3041 32 1 5.3429 -0.3303 -0.7305 33 1 6.0144 -1.5243 0.4063 34 1 8.6263 -1.1779 -2.1667 35 1 4.7083 0.3334 3.4654 36 1 5.4591 -1.0785 5.4467 37 1 5.0587 -3.5685 5.1654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411516410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:39 Heat of formation + Delta-G solvation = 10.133432 kcal Electronic energy + Delta-G solvation = -16678.962226 eV Core-core repulsion = 14160.988455 eV Total energy + Delta-G solvation = -2517.973771 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.27703 -36.57114 -34.46421 -32.52292 -30.01257 -27.73945 -26.87852 -25.84081 -23.85915 -21.94684 -21.23058 -19.46660 -18.92085 -17.04672 -16.21390 -15.40868 -14.95530 -14.50946 -14.07445 -13.83018 -13.42226 -13.27375 -12.69864 -12.39811 -12.30395 -11.99272 -11.93236 -11.69016 -11.51149 -11.44064 -11.19846 -10.82379 -10.63725 -10.50859 -10.34854 -10.18545 -10.08797 -9.88372 -9.16597 -8.50366 -8.29315 -8.15770 -7.40140 -6.01902 -4.03608 1.31849 1.93653 2.32230 3.04208 3.31712 3.38974 3.43985 4.44040 4.94230 5.11572 5.26503 5.30505 5.34238 5.43495 5.44494 5.74765 5.76862 5.83115 5.86491 5.94408 6.09159 6.10849 6.19186 6.26087 6.33206 6.40949 6.52131 6.58892 6.73329 6.76178 6.91811 7.24324 7.45205 7.78133 8.11907 8.31965 8.57312 9.05161 9.61036 11.09144 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.007602 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.640974 B = 3682.387299 C = 4944.208755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.092 4.092 5 C 0.148 3.852 6 H 0.092 0.908 7 N -0.673 5.673 8 C 0.195 3.805 9 C -0.512 4.512 10 H 0.062 0.938 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.176 4.176 18 C -0.153 4.153 19 C -0.130 4.130 20 C -0.231 4.231 21 S 0.103 5.897 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.327 0.673 32 H 0.028 0.972 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 1.111 10.153 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.131 4.131 5 C 0.035 3.965 6 H 0.110 0.890 7 N -0.302 5.302 8 C 0.068 3.932 9 C -0.551 4.551 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.296 4.296 18 C -0.184 4.184 19 C -0.161 4.161 20 C -0.366 4.366 21 S 0.366 5.634 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.046 0.954 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.798 0.260 8.877 13.981 hybrid contribution 1.620 0.340 0.844 1.858 sum -9.178 0.600 9.721 13.383 Atomic orbital electron populations 1.21836 0.96272 1.01164 1.00881 1.21024 0.94163 0.96044 0.99820 1.21856 1.01673 0.96188 1.00568 1.21602 0.93861 1.00292 0.97341 1.20433 0.94863 0.97810 0.83432 0.89039 1.60894 1.31147 1.06906 1.31276 1.19594 0.81965 0.97246 0.94373 1.21194 0.99796 1.18755 1.15347 0.91962 1.24969 0.96313 0.95723 0.97481 1.69976 1.07435 1.34543 1.41648 0.86462 0.78313 0.80557 0.82210 1.19642 1.21022 1.21122 1.25919 1.05680 0.95933 1.02048 1.20079 1.03404 1.01102 0.93780 1.20111 1.02943 0.92990 1.00071 1.25526 1.09923 0.99957 1.01236 1.84190 1.60562 1.07004 1.11680 0.93500 0.93130 0.93044 0.88978 0.92197 0.93249 0.93659 0.92228 0.92558 0.85469 0.95374 0.99323 0.93017 0.84739 0.84914 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.09 -1.32 2.86 -90.63 -0.26 -1.58 16 3 C -0.15 -2.01 8.95 37.16 0.33 -1.68 16 4 C -0.09 -1.36 4.34 -26.74 -0.12 -1.48 16 5 C 0.15 2.59 2.29 -68.87 -0.16 2.43 16 6 H 0.09 1.69 5.98 -51.93 -0.31 1.38 16 7 N -0.67 -14.13 5.60 -109.22 -0.61 -14.74 16 8 C 0.19 5.06 5.23 -4.97 -0.03 5.03 16 9 C -0.51 -14.49 9.32 -34.44 -0.32 -14.81 16 10 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 13 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 C -0.18 -2.99 5.21 -36.00 -0.19 -3.18 16 18 C -0.15 -2.41 10.04 -41.21 -0.41 -2.83 16 19 C -0.13 -1.85 10.18 -41.21 -0.42 -2.27 16 20 C -0.23 -3.25 11.23 29.04 0.33 -2.92 16 21 S 0.10 1.62 22.04 -107.50 -2.37 -0.74 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 1.57 7.62 -51.93 -0.40 1.17 16 26 H 0.06 0.93 6.46 -51.92 -0.34 0.59 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.33 6.83 7.30 -39.29 -0.29 6.54 16 32 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 33 H -0.01 -0.31 8.00 -51.93 -0.42 -0.73 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 35 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -29.59 316.80 -9.42 -39.02 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.94 Total: 4.19 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -1.00 Total: -23.14 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.12 Total: -40.90 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.37 Total: -0.74 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.59 -9.42 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411516410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.151 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds