Wall clock time and date at job start Mon Mar 30 2020 07:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46834 * 2 1 4 4 C 1.52994 * 109.47757 * 120.00447 * 2 1 3 5 5 C 1.52998 * 109.47502 * 174.99946 * 4 2 1 6 6 H 1.09005 * 109.47051 * 54.99832 * 5 4 2 7 7 N 1.46900 * 109.47103 * 295.00140 * 5 4 2 8 8 C 1.46898 * 110.99918 * 154.99890 * 7 5 4 9 9 C 1.50704 * 109.47061 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99903 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00201 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99905 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00334 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46845 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47329 * 119.99973 * 13 11 9 16 16 H 1.48501 * 109.47275 * 240.00265 * 13 11 9 17 17 C 1.50701 * 109.47480 * 174.99695 * 5 4 2 18 18 C 1.33388 * 125.20552 * 260.00736 * 17 5 4 19 19 C 1.38421 * 114.92066 * 180.24956 * 18 17 5 20 20 C 1.33395 * 114.92147 * 359.48238 * 19 18 17 21 21 S 1.75885 * 125.19989 * 79.97263 * 17 5 4 22 22 H 1.09002 * 109.46847 * 299.99453 * 1 2 3 23 23 H 1.08995 * 109.47847 * 59.99322 * 1 2 3 24 24 H 1.09000 * 109.46700 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46847 * 240.00547 * 2 1 3 26 26 H 1.09009 * 109.47488 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47579 * 300.00374 * 3 2 1 28 28 H 1.09002 * 109.46956 * 60.00614 * 3 2 1 29 29 H 1.08999 * 109.47018 * 54.99483 * 4 2 1 30 30 H 1.09009 * 109.46899 * 295.00169 * 4 2 1 31 31 H 1.00896 * 110.99597 * 278.95011 * 7 5 4 32 32 H 1.09006 * 109.47228 * 299.99489 * 8 7 5 33 33 H 1.08999 * 109.47056 * 59.99913 * 8 7 5 34 34 H 0.96999 * 119.99939 * 179.97438 * 12 11 9 35 35 H 1.08002 * 122.53671 * 359.96983 * 18 17 5 36 36 H 1.08001 * 122.54223 * 179.72513 * 19 18 17 37 37 H 1.07998 * 125.20353 * 180.21324 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 1 3.9955 0.1612 1.0525 7 7 3.9490 -1.6894 0.0592 8 6 5.3051 -1.3706 -0.4070 9 6 5.6636 -2.2696 -1.5621 10 1 4.9550 -3.0047 -1.9144 11 6 6.8960 -2.1539 -2.1692 12 7 7.7590 -1.2591 -1.7399 13 14 7.3406 -3.2687 -3.6005 14 1 6.2054 -4.1820 -3.8877 15 1 7.6268 -2.4428 -4.8010 16 1 8.5428 -4.0674 -3.2511 17 6 4.0776 -1.4303 2.4719 18 6 4.6041 -0.7414 3.4856 19 6 5.0123 -1.5090 4.5627 20 6 4.8074 -2.8202 4.4283 21 16 4.0723 -3.1449 2.8637 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6055 -1.7198 1.2950 30 1 1.7517 -0.1584 2.1369 31 1 3.8709 -2.6651 0.3041 32 1 5.3429 -0.3303 -0.7305 33 1 6.0144 -1.5243 0.4063 34 1 8.6263 -1.1779 -2.1667 35 1 4.7083 0.3334 3.4654 36 1 5.4591 -1.0785 5.4467 37 1 5.0587 -3.5685 5.1654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411516410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:35 Heat of formation + Delta-G solvation = -6.635556 kcal Electronic energy + Delta-G solvation = -16679.689384 eV Core-core repulsion = 14160.988455 eV Total energy + Delta-G solvation = -2518.700929 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 3.83 seconds Orbital eigenvalues (eV) -39.60569 -37.80792 -36.08028 -34.48408 -31.60927 -29.07445 -27.95195 -27.69917 -25.10985 -23.84567 -22.68065 -20.71025 -20.12348 -18.68672 -18.00726 -16.90421 -16.44950 -16.04715 -15.52069 -15.23735 -14.89561 -14.67377 -14.18393 -13.81245 -13.60125 -13.39914 -13.30551 -13.18823 -12.98545 -12.74211 -12.67304 -12.43878 -12.40243 -12.01163 -11.69845 -11.58019 -11.37699 -11.34243 -11.20021 -10.67724 -9.53714 -9.40944 -9.17682 -8.22346 -6.33035 0.11277 0.71750 1.12390 1.39815 1.40293 1.54166 1.86305 2.39420 3.11152 3.56281 3.68572 4.14511 4.16793 4.22884 4.29672 4.46602 4.63067 4.67114 4.70087 4.87438 4.92689 4.96929 5.04883 5.09128 5.14997 5.19052 5.20390 5.30651 5.38128 5.44785 5.56051 5.58171 5.64079 5.72662 6.02170 6.39517 6.66759 6.86973 7.37444 8.89286 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.007602 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.640974 B = 3682.387299 C = 4944.208755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.082 4.082 5 C 0.150 3.850 6 H 0.076 0.924 7 N -0.668 5.668 8 C 0.218 3.782 9 C -0.532 4.532 10 H 0.062 0.938 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.969 3.031 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.278 1.278 17 C -0.207 4.207 18 C -0.154 4.154 19 C -0.138 4.138 20 C -0.219 4.219 21 S 0.078 5.922 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.329 0.671 32 H -0.001 1.001 33 H -0.043 1.043 34 H 0.264 0.736 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.987 0.560 10.970 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.120 4.120 5 C 0.038 3.962 6 H 0.094 0.906 7 N -0.298 5.298 8 C 0.090 3.910 9 C -0.571 4.571 10 H 0.081 0.919 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.794 3.206 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.204 1.204 17 C -0.326 4.326 18 C -0.185 4.185 19 C -0.168 4.168 20 C -0.354 4.354 21 S 0.340 5.660 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.018 0.982 33 H -0.025 1.025 34 H 0.073 0.927 35 H 0.162 0.838 36 H 0.182 0.818 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.604 -0.290 9.708 15.132 hybrid contribution 1.871 0.550 0.681 2.066 sum -9.733 0.260 10.389 14.238 Atomic orbital electron populations 1.21767 0.93912 1.01753 1.02040 1.20988 0.96115 0.95845 0.98162 1.21821 0.99992 0.96233 1.01916 1.21533 0.91476 1.00706 0.98302 1.20401 0.96734 0.96198 0.82871 0.90599 1.60775 1.27833 1.07489 1.33670 1.19125 0.83770 0.95178 0.92927 1.21543 1.00228 1.19151 1.16149 0.91937 1.25907 0.96131 0.97169 1.00319 1.70102 1.07930 1.36113 1.43121 0.85335 0.78250 0.78564 0.78474 1.18658 1.20323 1.20379 1.25810 1.07761 0.96741 1.02281 1.20408 1.02207 1.01933 0.93931 1.20421 1.02860 0.92952 1.00598 1.25929 1.08428 1.00727 1.00323 1.84215 1.61475 1.06617 1.13649 0.91882 0.92417 0.92776 0.92182 0.94760 0.92574 0.91616 0.92170 0.90680 0.85299 0.98242 1.02517 0.92706 0.83781 0.81840 0.79376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 2 C -0.09 -2.64 2.86 -10.80 -0.03 -2.67 16 3 C -0.14 -3.90 8.95 71.98 0.64 -3.26 16 4 C -0.08 -2.38 4.34 30.59 0.13 -2.25 16 5 C 0.15 5.42 2.29 44.17 0.10 5.52 16 6 H 0.08 2.95 5.98 -2.38 -0.01 2.94 16 7 N -0.67 -29.18 5.60 -499.45 -2.80 -31.98 16 8 C 0.22 11.86 5.23 85.56 0.45 12.31 16 9 C -0.53 -30.86 9.32 25.60 0.24 -30.62 16 10 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 13 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C -0.21 -7.05 5.21 24.59 0.13 -6.92 16 18 C -0.15 -4.71 10.04 21.22 0.21 -4.50 16 19 C -0.14 -3.61 10.18 21.22 0.22 -3.40 16 20 C -0.22 -5.67 11.23 66.72 0.75 -4.93 16 21 S 0.08 2.43 22.04 -56.49 -1.24 1.18 16 22 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 2.10 7.62 -2.39 -0.02 2.08 16 26 H 0.03 1.10 6.46 -2.38 -0.02 1.08 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.33 14.17 7.30 -89.70 -0.65 13.51 16 32 H 0.00 -0.03 8.06 -2.38 -0.02 -0.05 16 33 H -0.04 -2.56 8.00 -2.39 -0.02 -2.58 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 36 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -64.63 316.80 2.61 -62.02 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.38 Total: 21.06 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 3.96 Total: -42.48 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -2.51 Total: -88.79 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.24 Total: 1.18 kcal Total: -64.63 2.61 -62.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411516410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.384 kcal (2) G-P(sol) polarization free energy of solvation -64.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds