Wall clock time and date at job start Mon Mar 30 2020 07:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35955 * 117.00110 * 2 1 4 4 C 1.38658 * 120.06344 * 359.72872 * 3 2 1 5 5 C 1.38176 * 119.96926 * 180.27217 * 4 3 2 6 6 C 1.38263 * 120.09855 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93926 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47151 * 275.92422 * 7 6 5 9 9 C 1.52999 * 109.47048 * 35.92463 * 7 6 5 10 10 N 1.46499 * 109.46763 * 155.92018 * 7 6 5 11 11 C 1.36936 * 119.99842 * 174.74921 * 10 7 6 12 12 H 1.08004 * 119.99952 * 359.97438 * 11 10 7 13 13 C 1.38812 * 120.00143 * 180.02562 * 11 10 7 14 14 N 1.31616 * 120.00032 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00070 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46580 * 60.00275 * 15 13 11 17 17 H 1.48494 * 109.47039 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47251 * 300.00394 * 15 13 11 19 19 C 1.38253 * 120.12329 * 0.05217 * 6 5 4 20 20 C 1.38335 * 120.03089 * 359.94376 * 19 6 5 21 21 F 1.35101 * 120.05177 * 180.02562 * 20 19 6 22 22 H 1.09007 * 109.46941 * 299.99607 * 1 2 3 23 23 H 1.09003 * 109.47271 * 59.98932 * 1 2 3 24 24 H 1.08993 * 109.47478 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.01694 * 0.25121 * 4 3 2 26 26 H 1.08000 * 119.95278 * 179.97438 * 5 4 3 27 27 H 1.08998 * 109.47340 * 59.99983 * 8 7 6 28 28 H 1.09000 * 109.46669 * 180.02562 * 8 7 6 29 29 H 1.08998 * 109.46719 * 299.99711 * 8 7 6 30 30 H 1.09001 * 109.47543 * 59.99323 * 9 7 6 31 31 H 1.08996 * 109.47319 * 179.97438 * 9 7 6 32 32 H 1.09006 * 109.46912 * 300.00104 * 9 7 6 33 33 H 0.96997 * 120.00538 * 354.75196 * 10 7 6 34 34 H 0.97000 * 119.99914 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.98535 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2924 2.3751 -0.0057 5 6 1.9218 3.6052 -0.0114 6 6 3.3025 3.6776 -0.0108 7 6 3.9852 5.0211 -0.0165 8 6 4.0844 5.5368 -1.4535 9 6 3.1743 6.0087 0.8250 10 7 5.3302 4.8876 0.5485 11 6 6.1825 5.9595 0.5479 12 1 5.8632 6.9030 0.1306 13 6 7.4572 5.8329 1.0828 14 7 7.8468 4.6826 1.5900 15 14 8.6201 7.2949 1.0813 16 1 8.0154 8.4090 1.8548 17 1 9.9098 6.9021 1.7039 18 1 8.8596 7.7355 -0.3165 19 6 4.0580 2.5198 -0.0057 20 6 3.4334 1.2855 0.0000 21 9 4.1713 0.1538 0.0055 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2138 2.3201 -0.0060 26 1 1.3343 4.5114 -0.0162 27 1 3.0836 5.6360 -1.8739 28 1 4.5785 6.5083 -1.4576 29 1 4.6621 4.8332 -2.0529 30 1 3.1035 5.6413 1.8487 31 1 3.6683 6.9803 0.8213 32 1 2.1734 6.1079 0.4046 33 1 5.6172 4.0401 0.9230 34 1 8.7377 4.5941 1.9634 35 1 5.1364 2.5790 -0.0058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528675557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:28 Heat of formation + Delta-G solvation = -62.554715 kcal Electronic energy + Delta-G solvation = -18786.259575 eV Core-core repulsion = 15698.920634 eV Total energy + Delta-G solvation = -3087.338942 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.83099 -41.15934 -39.49716 -36.96202 -34.29400 -31.95175 -30.99469 -30.06194 -28.08832 -27.77518 -26.12952 -23.65311 -23.48443 -20.60288 -19.52587 -18.93848 -17.93569 -17.47667 -17.12385 -16.69739 -16.13742 -16.02684 -15.59285 -15.33223 -15.08177 -14.61277 -14.36166 -13.83377 -13.66840 -13.29005 -13.19324 -12.89377 -12.86259 -12.67953 -12.52057 -12.25783 -12.16429 -12.05867 -11.82394 -11.55622 -11.38084 -10.90910 -9.90383 -9.15240 -8.91570 -7.88795 -5.16759 0.15158 0.26536 1.48608 1.51288 1.56957 2.22895 2.56147 2.61852 3.23614 3.46108 3.70739 3.76532 3.94926 4.09651 4.29445 4.42042 4.45135 4.47140 4.59167 4.61590 4.76167 4.86200 4.93894 4.98384 5.08066 5.11639 5.22450 5.24546 5.49466 5.51339 5.65000 5.68528 5.75409 6.33287 6.34649 7.38962 8.14381 8.37306 9.35371 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.033053 B = 0.005674 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.922980 B = 4933.686236 C = 5528.149013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.085 3.915 4 C -0.166 4.166 5 C -0.075 4.075 6 C -0.084 4.084 7 C 0.222 3.778 8 C -0.139 4.139 9 C -0.144 4.144 10 N -0.735 5.735 11 C -0.221 4.221 12 H 0.082 0.918 13 C -0.081 4.081 14 N -0.975 5.975 15 Si 0.968 3.032 16 H -0.277 1.277 17 H -0.302 1.302 18 H -0.279 1.279 19 C -0.121 4.121 20 C 0.038 3.962 21 F -0.152 7.152 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.118 0.882 25 H 0.179 0.821 26 H 0.168 0.832 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.371 0.629 34 H 0.247 0.753 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.462 -3.816 -4.738 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.251 6.251 3 C 0.039 3.961 4 C -0.184 4.184 5 C -0.093 4.093 6 C -0.085 4.085 7 C 0.133 3.867 8 C -0.198 4.198 9 C -0.203 4.203 10 N -0.377 5.377 11 C -0.353 4.353 12 H 0.100 0.900 13 C -0.272 4.272 14 N -0.627 5.627 15 Si 0.797 3.203 16 H -0.203 1.203 17 H -0.228 1.228 18 H -0.205 1.205 19 C -0.141 4.141 20 C 0.018 3.982 21 F -0.131 7.131 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.136 0.864 25 H 0.196 0.804 26 H 0.186 0.814 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.205 0.795 34 H 0.056 0.944 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.296 -3.884 -4.769 20.253 hybrid contribution 1.673 0.007 0.388 1.717 sum -17.623 -3.877 -4.381 18.569 Atomic orbital electron populations 1.23467 0.75506 1.05893 1.02998 1.86102 1.24337 1.25748 1.88869 1.19029 0.89821 0.86879 1.00396 1.21455 1.01696 0.89849 1.05419 1.21247 0.92459 0.98980 0.96587 1.19940 0.94510 0.93717 1.00299 1.18793 0.84476 0.90057 0.93355 1.22118 1.01471 1.00488 0.95703 1.22246 0.99835 0.98920 0.99332 1.42900 1.11159 1.12015 1.71592 1.19501 0.93538 0.92116 1.30146 0.90011 1.25504 0.99669 0.99310 1.02755 1.69825 1.19428 1.25607 1.47849 0.85286 0.78066 0.79228 0.77672 1.20321 1.22850 1.20504 1.20882 1.00868 0.90807 1.01513 1.17242 0.87234 0.82248 1.11470 1.91420 1.77260 1.49715 1.94706 0.90980 0.90716 0.86361 0.80370 0.81436 0.90211 0.93198 0.94808 0.94194 0.93597 0.89511 0.79503 0.94380 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -8.79 10.36 -93.04 -0.96 -9.76 16 3 C 0.08 2.46 6.69 22.53 0.15 2.61 16 4 C -0.17 -3.64 9.04 22.36 0.20 -3.44 16 5 C -0.07 -1.83 9.14 22.26 0.20 -1.63 16 6 C -0.08 -2.85 4.80 -19.85 -0.10 -2.94 16 7 C 0.22 8.38 0.98 2.86 0.00 8.38 16 8 C -0.14 -4.79 8.34 71.98 0.60 -4.19 16 9 C -0.14 -4.70 7.97 71.98 0.57 -4.13 16 10 N -0.73 -36.64 4.85 -306.74 -1.49 -38.12 16 11 C -0.22 -11.98 8.70 84.03 0.73 -11.25 16 12 H 0.08 4.18 6.69 -2.91 -0.02 4.16 16 13 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 14 N -0.98 -60.93 13.06 21.65 0.28 -60.65 16 15 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 19 C -0.12 -4.73 8.98 22.30 0.20 -4.53 16 20 C 0.04 1.38 7.31 22.45 0.16 1.54 16 21 F -0.15 -6.06 17.11 44.97 0.77 -5.29 16 22 H 0.07 0.76 7.67 -2.38 -0.02 0.74 16 23 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 24 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.18 2.27 6.30 -2.91 -0.02 2.25 16 26 H 0.17 2.91 6.35 -2.91 -0.02 2.89 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.81 7.00 -2.39 -0.02 1.79 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.61 7.58 -2.39 -0.02 1.59 16 32 H 0.09 2.00 6.52 -2.38 -0.02 1.98 16 33 H 0.37 20.42 5.69 -92.71 -0.53 19.89 16 34 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.12 5.33 6.45 -2.91 -0.02 5.31 16 Total: -1.00 -70.12 292.30 5.52 -64.59 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.58 Total: 23.16 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 4.31 Total: -22.44 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -1.20 Total: -98.77 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.96 Total: -9.76 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.77 Total: -5.29 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -70.12 5.52 -64.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528675557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.040 kcal (2) G-P(sol) polarization free energy of solvation -70.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds