Wall clock time and date at job start Mon Mar 30 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99928 * 2 1 4 4 H 1.48500 * 109.47051 * 269.99876 * 3 2 1 5 5 H 1.48494 * 109.47243 * 29.99529 * 3 2 1 6 6 H 1.48505 * 109.47320 * 149.99961 * 3 2 1 7 7 C 1.37875 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00447 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00062 * 179.97438 * 7 2 1 10 10 N 1.46906 * 109.47143 * 179.97438 * 9 7 2 11 11 C 1.47956 * 110.99861 * 170.00430 * 10 9 7 12 12 C 1.53934 * 86.17824 * 222.41929 * 11 10 9 13 13 F 1.39899 * 113.73247 * 269.25487 * 12 11 10 14 14 C 1.50709 * 113.73253 * 138.07894 * 12 11 10 15 15 C 1.38221 * 120.00813 * 120.02259 * 14 12 11 16 16 C 1.38230 * 120.01866 * 179.97438 * 15 14 12 17 17 C 1.38265 * 120.05232 * 359.97438 * 16 15 14 18 18 C 1.38170 * 120.02652 * 0.02562 * 17 16 15 19 19 C 1.38437 * 120.01415 * 300.00005 * 14 12 11 20 20 F 1.35096 * 120.02231 * 0.04009 * 19 14 12 21 21 C 1.47955 * 110.99755 * 70.64556 * 10 9 7 22 22 H 0.96996 * 120.00071 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46935 * 60.00247 * 9 7 2 24 24 H 1.08994 * 109.47627 * 300.00402 * 9 7 2 25 25 H 1.08996 * 113.76312 * 108.10228 * 11 10 9 26 26 H 1.09000 * 113.76248 * 336.73414 * 11 10 9 27 27 H 1.07993 * 119.99337 * 359.97438 * 15 14 12 28 28 H 1.07998 * 119.96482 * 180.27548 * 16 15 14 29 29 H 1.07999 * 119.98131 * 179.97438 * 17 16 15 30 30 H 1.08001 * 120.01123 * 179.97438 * 18 17 16 31 31 H 1.09004 * 113.75951 * 23.26211 * 21 10 9 32 32 H 1.09003 * 113.75714 * 251.90466 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0013 -2.5790 -0.0010 11 6 5.4604 -2.6254 -0.2413 12 6 5.1650 -3.8138 -1.1741 13 9 5.2097 -5.0568 -0.5338 14 6 5.9518 -3.7864 -2.4592 15 6 6.8073 -4.8270 -2.7683 16 6 7.5287 -4.8024 -3.9472 17 6 7.3949 -3.7373 -4.8186 18 6 6.5403 -2.6959 -4.5117 19 6 5.8175 -2.7192 -3.3307 20 9 4.9819 -1.7014 -3.0294 21 6 3.7459 -3.2317 -1.3040 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8746 -0.6799 -0.8910 25 1 6.0425 -2.8934 0.6404 26 1 5.8487 -1.7476 -0.7579 27 1 6.9123 -5.6597 -2.0886 28 1 8.1936 -5.6181 -4.1899 29 1 7.9594 -3.7190 -5.7392 30 1 6.4363 -1.8639 -5.1924 31 1 3.6325 -2.5312 -2.1314 32 1 2.9579 -3.9841 -1.2713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589960621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:34 Heat of formation + Delta-G solvation = -41.836710 kcal Electronic energy + Delta-G solvation = -18751.976276 eV Core-core repulsion = 15542.075430 eV Total energy + Delta-G solvation = -3209.900847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.22142 -48.88301 -40.66281 -39.51775 -35.06721 -33.14980 -31.63776 -30.85955 -27.62750 -27.05163 -24.34403 -23.73780 -22.22608 -21.14246 -19.08872 -18.81334 -17.82995 -17.50805 -17.08780 -16.71583 -16.55968 -16.30099 -15.81512 -15.39050 -15.16245 -14.96807 -14.70508 -14.30756 -14.00286 -13.61698 -13.48804 -13.36672 -12.89198 -12.79169 -12.50332 -12.12694 -11.88382 -11.83998 -11.49670 -11.47763 -10.86229 -9.99646 -9.75389 -9.65326 -8.34704 -6.40013 0.03219 0.19379 1.30241 1.32443 1.43586 2.29546 2.48957 2.76647 2.93086 2.98725 3.16637 3.22490 3.53296 3.85061 3.91970 4.16497 4.25723 4.33677 4.38123 4.42776 4.56062 4.67645 4.69567 4.82614 4.96371 5.05094 5.22333 5.28701 5.33497 5.41309 5.61846 5.82547 5.88486 6.39461 6.64504 7.23641 8.82251 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.006660 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.249441 B = 4203.194121 C = 4733.744948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.525 4.525 8 H 0.032 0.968 9 C 0.142 3.858 10 N -0.487 5.487 11 C -0.007 4.007 12 C 0.142 3.858 13 F -0.181 7.181 14 C -0.155 4.155 15 C -0.082 4.082 16 C -0.118 4.118 17 C -0.077 4.077 18 C -0.153 4.153 19 C 0.084 3.916 20 F -0.147 7.147 21 C -0.013 4.013 22 H 0.269 0.731 23 H 0.032 0.968 24 H 0.004 0.996 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.155 0.845 31 H 0.101 0.899 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.164 -7.126 -11.295 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.173 1.173 7 C -0.563 4.563 8 H 0.050 0.950 9 C 0.014 3.986 10 N -0.209 5.209 11 C -0.136 4.136 12 C 0.123 3.877 13 F -0.161 7.161 14 C -0.157 4.157 15 C -0.100 4.100 16 C -0.135 4.135 17 C -0.094 4.094 18 C -0.172 4.172 19 C 0.065 3.935 20 F -0.125 7.125 21 C -0.142 4.142 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.021 0.979 25 H 0.129 0.871 26 H 0.104 0.896 27 H 0.162 0.838 28 H 0.186 0.814 29 H 0.191 0.809 30 H 0.172 0.828 31 H 0.119 0.881 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.682 -7.266 -10.633 23.522 hybrid contribution -0.617 1.289 -0.128 1.435 sum 19.065 -5.978 -10.761 22.694 Atomic orbital electron populations 1.70042 1.08146 1.28342 1.51971 1.25867 0.95667 1.03216 0.93896 0.85702 0.79484 0.78366 0.79395 1.18898 1.20144 1.17302 1.21133 0.90833 0.93343 1.50984 0.95006 1.20445 0.94924 0.87414 0.95830 1.68489 1.05352 1.17243 1.29806 1.24642 0.92800 0.96533 0.99623 1.20761 0.96087 0.80667 0.90147 1.92806 1.97094 1.43202 1.82960 1.19971 1.02367 0.97519 0.95829 1.21169 0.93831 0.96620 0.98359 1.21639 0.99337 0.99793 0.92771 1.21552 0.95810 0.91538 1.00510 1.21463 0.98106 1.02458 0.95136 1.17834 0.93388 0.85766 0.96523 1.91418 1.69360 1.58509 1.93259 1.24773 0.95523 0.99313 0.94569 0.92193 0.94958 0.97850 0.87107 0.89581 0.83786 0.81421 0.80920 0.82765 0.88094 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 2 C 0.01 0.69 5.47 84.66 0.46 1.15 16 3 Si 0.95 45.19 27.47 68.60 1.88 47.07 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.52 -32.03 9.40 25.60 0.24 -31.79 16 8 H 0.03 2.17 8.04 -2.91 -0.02 2.15 16 9 C 0.14 7.23 3.65 85.56 0.31 7.54 16 10 N -0.49 -22.33 6.25 -912.56 -5.71 -28.03 16 11 C -0.01 -0.25 7.14 86.41 0.62 0.37 16 12 C 0.14 4.88 2.13 -10.89 -0.02 4.86 16 13 F -0.18 -6.26 16.27 44.97 0.73 -5.53 16 14 C -0.16 -4.32 5.30 -19.82 -0.11 -4.42 16 15 C -0.08 -1.70 9.50 22.26 0.21 -1.48 16 16 C -0.12 -1.63 10.04 22.27 0.22 -1.41 16 17 C -0.08 -1.01 10.04 22.26 0.22 -0.79 16 18 C -0.15 -2.97 10.03 22.31 0.22 -2.75 16 19 C 0.08 2.32 6.73 22.37 0.15 2.48 16 20 F -0.15 -5.07 12.75 44.97 0.57 -4.49 16 21 C -0.01 -0.54 6.55 86.40 0.57 0.02 16 22 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 23 H 0.03 1.64 7.20 -2.39 -0.02 1.62 16 24 H 0.00 0.19 6.89 -2.39 -0.02 0.17 16 25 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 26 H 0.09 2.95 6.79 -2.39 -0.02 2.93 16 27 H 0.14 2.72 7.41 -2.91 -0.02 2.70 16 28 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 29 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 30 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.10 4.39 4.72 -2.39 -0.01 4.38 16 32 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -72.98 273.25 1.96 -71.02 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.08 Total: 6.53 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.10 Total: -26.22 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -5.41 Total: -88.37 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 1.30 Total: -10.03 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -72.98 1.96 -71.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589960621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.180 kcal (2) G-P(sol) polarization free energy of solvation -72.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds