Wall clock time and date at job start Mon Mar 30 2020 06:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48501 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47389 * 299.99439 * 3 2 1 6 6 H 1.48501 * 109.47322 * 60.00012 * 3 2 1 7 7 C 1.37872 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00626 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99918 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.39696 * 120.00316 * 179.97438 * 10 9 7 12 12 C 1.39010 * 120.00843 * 0.02562 * 11 10 9 13 13 C 1.38169 * 120.16597 * 179.97438 * 12 11 10 14 14 C 1.38097 * 120.19914 * 0.04116 * 13 12 11 15 15 C 1.39351 * 120.02690 * 0.26003 * 14 13 12 16 16 C 1.48398 * 120.08393 * 179.72006 * 15 14 13 17 17 C 1.39339 * 120.12136 * 179.71936 * 16 15 14 18 18 C 1.38021 * 119.87769 * 179.78947 * 17 16 15 19 19 C 1.38316 * 120.12044 * 0.49105 * 18 17 16 20 20 C 1.38323 * 120.24328 * 359.74275 * 19 18 17 21 21 C 1.38017 * 120.11956 * 0.02562 * 20 19 18 22 22 C 1.38681 * 120.01654 * 179.97438 * 11 10 9 23 23 H 0.97005 * 120.00427 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47352 * 59.99676 * 9 7 2 25 25 H 1.08998 * 109.46834 * 299.99802 * 9 7 2 26 26 H 0.97003 * 120.00322 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.92038 * 359.97438 * 12 11 10 28 28 H 1.07996 * 119.90281 * 180.02562 * 13 12 11 29 29 H 1.08002 * 119.98303 * 179.97438 * 14 13 12 30 30 H 1.07998 * 120.05948 * 0.02562 * 17 16 15 31 31 H 1.07995 * 119.93743 * 180.22952 * 18 17 16 32 32 H 1.07994 * 119.87933 * 179.76204 * 19 18 17 33 33 H 1.07996 * 119.94004 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.05795 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.09803 * 0.02562 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7375 -4.9297 0.0011 12 6 0.3708 -5.1840 0.0011 13 6 -0.0932 -6.4854 0.0011 14 6 0.7977 -7.5406 0.0019 15 6 2.1694 -7.2951 0.0083 16 6 3.1278 -8.4280 0.0155 17 6 4.4996 -8.1834 0.0159 18 6 5.3865 -9.2408 0.0270 19 6 4.9160 -10.5415 0.0275 20 6 3.5553 -10.7901 0.0221 21 6 2.6594 -9.7402 0.0158 22 6 2.6384 -5.9840 0.0005 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5566 0.8903 26 1 3.1567 -3.4354 0.0009 27 1 -0.3300 -4.3623 0.0011 28 1 -1.1559 -6.6781 0.0007 29 1 0.4311 -8.5565 0.0023 30 1 4.8681 -7.1682 0.0114 31 1 6.4499 -9.0523 0.0311 32 1 5.6135 -11.3659 0.0323 33 1 3.1932 -11.8075 0.0229 34 1 1.5972 -9.9354 0.0121 35 1 3.7006 -5.7887 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689684422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:15 Heat of formation + Delta-G solvation = 41.026071 kcal Electronic energy + Delta-G solvation = -16790.551813 eV Core-core repulsion = 14138.473696 eV Total energy + Delta-G solvation = -2652.078117 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63564 -38.21280 -35.09225 -32.78079 -32.09778 -31.06856 -29.52609 -28.25893 -26.30403 -23.63814 -23.03328 -22.20638 -21.06307 -19.87746 -17.63986 -16.86606 -15.81160 -15.57556 -15.32187 -14.73098 -14.53984 -13.94181 -13.68547 -13.43239 -13.31577 -12.94773 -12.88222 -12.75779 -12.08863 -11.80750 -11.46305 -11.28665 -11.00013 -10.96423 -10.68905 -10.43625 -10.16124 -9.74823 -9.40139 -9.16506 -8.95844 -8.58065 -7.82751 -6.58750 -6.23402 -4.28620 0.91616 1.39946 2.07915 2.34523 3.20352 3.27937 3.31367 3.82924 4.22541 4.50089 4.51951 4.81182 4.87252 4.93826 5.08343 5.14012 5.39401 5.43033 5.48117 5.61967 5.82528 5.94799 5.98835 6.08616 6.24436 6.32672 6.47283 6.53258 6.54176 6.89967 6.96842 6.99200 7.11611 7.12309 7.40035 7.41574 7.63449 7.92164 8.26241 8.64289 8.87786 9.37971 10.87261 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.038001 B = 0.003844 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.651697 B = 7282.293299 C = 8003.789375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.730 5.730 11 C 0.233 3.767 12 C -0.196 4.196 13 C -0.071 4.071 14 C -0.190 4.190 15 C -0.011 4.011 16 C -0.030 4.030 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.203 4.203 23 H 0.265 0.735 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.391 0.609 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 -17.816 0.030 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.352 5.352 11 C 0.124 3.876 12 C -0.219 4.219 13 C -0.089 4.089 14 C -0.210 4.210 15 C -0.012 4.012 16 C -0.030 4.030 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.148 4.148 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.226 4.226 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.224 0.776 27 H 0.143 0.857 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.387 -17.460 0.030 18.272 hybrid contribution 0.734 1.064 0.003 1.292 sum 6.121 -16.396 0.033 17.501 Atomic orbital electron populations 1.69950 1.06084 1.27264 1.49350 1.24930 0.94944 0.99481 0.94645 0.86356 0.79906 0.82878 0.77776 1.19639 1.20751 1.20756 1.21235 0.93399 0.90417 1.52673 0.91933 1.19119 0.88682 0.82665 0.96617 1.45522 1.09556 1.02391 1.77737 1.17952 0.92737 0.85579 0.91347 1.20846 0.94095 0.97290 1.09679 1.20743 0.98805 0.92081 0.97320 1.20716 0.92069 0.98353 1.09901 1.18348 0.92419 0.91220 0.99182 1.18946 0.92842 0.92708 0.98520 1.21329 0.92551 0.99451 0.99722 1.21079 0.99519 0.92720 1.00493 1.21143 0.95599 0.96731 1.01294 1.21061 0.93366 0.98800 1.00709 1.21277 0.99958 0.91820 1.00082 1.20533 0.98434 0.91066 1.12603 0.92492 0.96138 0.96132 0.77579 0.85688 0.86624 0.86981 0.85635 0.86155 0.86412 0.86201 0.85650 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 8 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 9 C 0.25 6.34 4.66 -5.19 -0.02 6.32 16 10 N -0.73 -15.53 5.72 -59.84 -0.34 -15.87 16 11 C 0.23 4.55 6.65 -83.82 -0.56 3.99 16 12 C -0.20 -3.72 9.31 -39.32 -0.37 -4.08 16 13 C -0.07 -1.13 10.03 -39.66 -0.40 -1.53 16 14 C -0.19 -2.88 9.42 -39.22 -0.37 -3.25 16 15 C -0.01 -0.17 5.87 -104.92 -0.62 -0.79 16 16 C -0.03 -0.42 5.88 -104.90 -0.62 -1.04 16 17 C -0.11 -1.44 9.43 -39.25 -0.37 -1.81 16 18 C -0.12 -1.31 10.03 -39.63 -0.40 -1.71 16 19 C -0.13 -1.31 10.04 -39.52 -0.40 -1.71 16 20 C -0.12 -1.26 10.03 -39.63 -0.40 -1.66 16 21 C -0.11 -1.37 9.43 -39.26 -0.37 -1.74 16 22 C -0.20 -3.48 9.27 -39.04 -0.36 -3.84 16 23 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.02 0.56 7.95 -51.93 -0.41 0.15 16 25 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 26 H 0.39 7.73 8.33 -40.82 -0.34 7.39 16 27 H 0.13 2.51 6.72 -52.49 -0.35 2.16 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.41 6.20 -52.49 -0.33 1.08 16 30 H 0.13 1.52 6.21 -52.49 -0.33 1.19 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.33 6.20 -52.49 -0.33 1.00 16 35 H 0.12 1.78 6.21 -52.49 -0.33 1.45 16 LS Contribution 298.54 15.07 4.50 4.50 Total: -1.00 -29.02 298.54 -9.83 -38.86 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.05 Total: 7.55 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -5.66 Total: -26.10 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.39 Total: -40.60 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.02 -9.83 -38.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689684422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.882 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds