Wall clock time and date at job start Mon Mar 30 2020 06:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99860 * 2 1 4 4 H 1.48501 * 109.47176 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47389 * 299.99439 * 3 2 1 6 6 H 1.48501 * 109.47322 * 60.00012 * 3 2 1 7 7 C 1.37872 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00626 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99918 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.39696 * 120.00316 * 179.97438 * 10 9 7 12 12 C 1.39010 * 120.00843 * 0.02562 * 11 10 9 13 13 C 1.38169 * 120.16597 * 179.97438 * 12 11 10 14 14 C 1.38097 * 120.19914 * 0.04116 * 13 12 11 15 15 C 1.39351 * 120.02690 * 0.26003 * 14 13 12 16 16 C 1.48398 * 120.08393 * 179.72006 * 15 14 13 17 17 C 1.39339 * 120.12136 * 179.71936 * 16 15 14 18 18 C 1.38021 * 119.87769 * 179.78947 * 17 16 15 19 19 C 1.38316 * 120.12044 * 0.49105 * 18 17 16 20 20 C 1.38323 * 120.24328 * 359.74275 * 19 18 17 21 21 C 1.38017 * 120.11956 * 0.02562 * 20 19 18 22 22 C 1.38681 * 120.01654 * 179.97438 * 11 10 9 23 23 H 0.97005 * 120.00427 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47352 * 59.99676 * 9 7 2 25 25 H 1.08998 * 109.46834 * 299.99802 * 9 7 2 26 26 H 0.97003 * 120.00322 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.92038 * 359.97438 * 12 11 10 28 28 H 1.07996 * 119.90281 * 180.02562 * 13 12 11 29 29 H 1.08002 * 119.98303 * 179.97438 * 14 13 12 30 30 H 1.07998 * 120.05948 * 0.02562 * 17 16 15 31 31 H 1.07995 * 119.93743 * 180.22952 * 18 17 16 32 32 H 1.07994 * 119.87933 * 179.76204 * 19 18 17 33 33 H 1.07996 * 119.94004 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.05795 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.09803 * 0.02562 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7375 -4.9297 0.0011 12 6 0.3708 -5.1840 0.0011 13 6 -0.0932 -6.4854 0.0011 14 6 0.7977 -7.5406 0.0019 15 6 2.1694 -7.2951 0.0083 16 6 3.1278 -8.4280 0.0155 17 6 4.4996 -8.1834 0.0159 18 6 5.3865 -9.2408 0.0270 19 6 4.9160 -10.5415 0.0275 20 6 3.5553 -10.7901 0.0221 21 6 2.6594 -9.7402 0.0158 22 6 2.6384 -5.9840 0.0005 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5566 0.8903 26 1 3.1567 -3.4354 0.0009 27 1 -0.3300 -4.3623 0.0011 28 1 -1.1559 -6.6781 0.0007 29 1 0.4311 -8.5565 0.0023 30 1 4.8681 -7.1682 0.0114 31 1 6.4499 -9.0523 0.0311 32 1 5.6135 -11.3659 0.0323 33 1 3.1932 -11.8075 0.0229 34 1 1.5972 -9.9354 0.0121 35 1 3.7006 -5.7887 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689684422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:14 Heat of formation + Delta-G solvation = 26.053471 kcal Electronic energy + Delta-G solvation = -16791.201073 eV Core-core repulsion = 14138.473696 eV Total energy + Delta-G solvation = -2652.727378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.116 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.76733 -39.37433 -36.71861 -34.68860 -33.28290 -32.01849 -31.00293 -29.50609 -28.10195 -25.14515 -24.20955 -23.59386 -22.22267 -21.16686 -19.16866 -18.31701 -17.15165 -16.97315 -16.76976 -16.22325 -15.65983 -15.30778 -15.10997 -14.75434 -14.47916 -14.29501 -14.08852 -14.00232 -13.93993 -13.24179 -12.88190 -12.78114 -12.50463 -12.35429 -12.15845 -11.74958 -11.56229 -11.42095 -11.23344 -10.65368 -10.35635 -9.80851 -8.99192 -8.32940 -8.16491 -6.46965 -0.15547 0.54827 0.75321 1.14715 1.39564 1.39819 1.53265 2.32322 2.82105 2.86234 3.02178 3.26663 3.73214 3.92161 4.11666 4.20772 4.26097 4.44890 4.48178 4.56537 4.63160 4.74135 4.86042 4.93307 5.08554 5.19237 5.24090 5.27192 5.41732 5.50586 5.51250 5.59294 5.64821 5.71162 5.84311 5.91922 6.08733 6.16863 6.46056 6.72960 7.12750 7.27081 8.79172 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.038001 B = 0.003844 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.651697 B = 7282.293299 C = 8003.789375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.558 4.558 8 H 0.070 0.930 9 C 0.273 3.727 10 N -0.737 5.737 11 C 0.207 3.793 12 C -0.225 4.225 13 C -0.067 4.067 14 C -0.182 4.182 15 C -0.008 4.008 16 C -0.061 4.061 17 C -0.127 4.127 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.206 4.206 23 H 0.269 0.731 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.396 0.604 27 H 0.099 0.901 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.315 -20.230 0.038 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.088 0.912 9 C 0.150 3.850 10 N -0.363 5.363 11 C 0.100 3.900 12 C -0.248 4.248 13 C -0.086 4.086 14 C -0.202 4.202 15 C -0.009 4.009 16 C -0.061 4.061 17 C -0.145 4.145 18 C -0.144 4.144 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.136 4.136 22 C -0.229 4.229 23 H 0.078 0.922 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.230 0.770 27 H 0.118 0.882 28 H 0.161 0.839 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.008 -19.930 0.038 21.126 hybrid contribution 0.265 1.535 0.001 1.558 sum 7.273 -18.394 0.039 19.780 Atomic orbital electron populations 1.70081 1.07840 1.28472 1.50078 1.25933 0.95844 1.03452 0.93906 0.85194 0.78840 0.77788 0.77923 1.18501 1.20147 1.20158 1.21614 0.93960 0.91291 1.52743 0.91174 1.18551 0.88687 0.83984 0.93762 1.45152 1.08959 1.02328 1.79822 1.18200 0.93503 0.85232 0.93019 1.20870 0.93753 0.98153 1.12011 1.21037 1.00572 0.90905 0.96046 1.21133 0.91673 0.99622 1.07796 1.18693 0.93460 0.91385 0.97363 1.18964 0.92913 0.92829 1.01412 1.21473 0.92674 1.00157 1.00231 1.21386 1.00435 0.92698 0.99908 1.21587 0.96237 0.97223 0.99088 1.21444 0.93345 0.99781 0.99501 1.21508 1.01148 0.91349 0.99579 1.20691 0.98747 0.91137 1.12305 0.92162 0.99166 0.99161 0.76960 0.88234 0.83898 0.83603 0.85971 0.84039 0.83422 0.83269 0.84332 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.89 13.29 21.44 0.28 -54.60 16 2 C 0.01 0.47 5.46 84.65 0.46 0.94 16 3 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.56 -31.22 9.28 25.60 0.24 -30.98 16 8 H 0.07 3.72 7.60 -2.91 -0.02 3.69 16 9 C 0.27 14.80 4.66 85.63 0.40 15.20 16 10 N -0.74 -33.30 5.72 -343.23 -1.96 -35.27 16 11 C 0.21 8.47 6.65 38.18 0.25 8.73 16 12 C -0.22 -9.02 9.31 22.44 0.21 -8.81 16 13 C -0.07 -2.14 10.03 22.22 0.22 -1.92 16 14 C -0.18 -5.23 9.42 22.50 0.21 -5.02 16 15 C -0.01 -0.25 5.87 -20.06 -0.12 -0.37 16 16 C -0.06 -1.60 5.88 -20.04 -0.12 -1.72 16 17 C -0.13 -3.07 9.43 22.48 0.21 -2.86 16 18 C -0.13 -2.40 10.03 22.24 0.22 -2.18 16 19 C -0.12 -2.01 10.04 22.31 0.22 -1.78 16 20 C -0.12 -2.07 10.03 22.24 0.22 -1.84 16 21 C -0.12 -2.49 9.43 22.48 0.21 -2.28 16 22 C -0.21 -7.17 9.27 22.62 0.21 -6.96 16 23 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 24 H -0.01 -0.56 7.95 -2.39 -0.02 -0.58 16 25 H -0.01 -0.55 7.94 -2.39 -0.02 -0.57 16 26 H 0.40 16.46 8.33 -92.71 -0.77 15.69 16 27 H 0.10 4.41 6.72 -2.91 -0.02 4.39 16 28 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 29 H 0.15 3.17 6.20 -2.91 -0.02 3.15 16 30 H 0.12 2.89 6.21 -2.91 -0.02 2.88 16 31 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.14 2.43 6.20 -2.91 -0.02 2.41 16 35 H 0.13 4.01 6.21 -2.91 -0.02 3.99 16 Total: -1.00 -65.01 298.54 3.74 -61.27 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.33 Total: 25.32 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 3.06 Total: -41.86 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -1.68 Total: -89.87 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -65.01 3.74 -61.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689684422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.320 kcal (2) G-P(sol) polarization free energy of solvation -65.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds